mRNA_C-linearis_contig8.15693.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15693.1
Unique NamemRNA_C-linearis_contig8.15693.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: D7G8E8_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E8_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 3.400e-123
Identity = 224/386 (58.03%), Postives = 243/386 (62.95%), Query Frame = 1
Query:   85 VRLEGRQWVSAGSKKAKVGVYSIAGEKVHDPSWKNQDAGLAIAPVGRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVSAF-RSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPA---------IAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGR----------------------------------LVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAEDIRKV 1110
            VRLEGR W SAGS +  VG+YSIAGEK HDP WKNQDAGL IAP  R EGQALFAIFDGHG NG QAS EC+ERLPK+L SA  +SG+PASALRRSCQRLH DLA+G AGDC RSGTTLCAAVL GRRLTVANVGDSGCLRL R T +               I GK + AS   T                    P   ++AGG+                                     LV ERLSRDHKPES GELERI+AAGG+VFPLPR      G  G                G ++   T AR   AG+PRVW A GDGPGLAMSRSIGDKMAHSVGVTYEPEI+EFDLD RSDVMLV ASDGVWDV+SAEDIRKV
Sbjct:    2 VRLEGR-WASAGSTEPNVGIYSIAGEKAHDPLWKNQDAGLVIAPFDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLAGRRLTVANVGDSGCLRLSRSTAAASXXXXXXXXXXXXXIPGKAALASDRGT--------------------PDVVDKAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRS-----GSGGXXXXXXXXXXXXXXXEGSKKGLKTAARGIAAGIPRVWTASGDGPGLAMSRSIGDKMAHSVGVTYEPEITEFDLDKRSDVMLVFASDGVWDVLSAEDIRKV 361          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.400e-30
Identity = 116/327 (35.47%), Postives = 152/327 (46.48%), Query Frame = 1
Query:  133 KVGVYSIAGEKVHDPSWKNQDAGL---AIAPVGRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVSAFRSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGR-RLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVW-RAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLD-PRSDVMLVLASDGVWDVMSAE 1095
            + GV SI G K  +P W+NQD  +   A+   G G+   +FA+ DGHG  G   +  C ERLP+ L +A   G+ A    R+C  LH DLASG   DC  SG T     ++ R  +TVAN+GDS C+  L R                          GG            V        G ++ ++ A  L+ DHKP+   E  RIQAAGG V    R+     G +G I+    PA                         RVW +  G+  GLAMSRSIGD +AH+ GV+ +PE+ E  LD    D  LVLASDGVWDV+ A+
Sbjct:   43 RAGVCSIQGLKPGNPRWENQDNFVMEEALDIDGGGDRLRVFAVLDGHGEAGHLVTRRCRERLPQLLRAA--RGDAA----RACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRCV--LGRWEC-----------------------GGXXXXXXXXXXXMV--------GRAQRQVCAVPLTTDHKPDRPDERARIQAAGGQVGS--RQLIVGSGPAGPIRIPMGPA-------------------------RVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQ 303          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A2P6TSH7_CHLSO (Protein-serine/threonine phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSH7_CHLSO)

HSP 1 Score: 110 bits (274), Expect = 3.230e-23
Identity = 95/311 (30.55%), Postives = 132/311 (42.44%), Query Frame = 1
Query:  175 PSWKNQDAGLAIAPVGRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVSA-FRSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQEL---TTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAE 1095
            P   NQDA  A   +G       F +FDGHG  G + +    ++LP  L      + NP  AL  +   ++  L +    D + SGTT C AVL GR L +ANVGDS  +              +A +P+A S                   A   S GAG+ +G     LVA  LS+D  P  + E  R+  AG  V  L                         Q  G+++  L   T   D     PR+W   G  PG A +RSIGD  A  +GV  +PE+    L P+    +VLA+DGVW+ +S++
Sbjct:   84 PDKANQDAVRAAEGLGGNAEAHFFGVFDGHGEFGTECAQFVKDKLPTVLAGEPTLASNPDKALHSALVSVNSQLHASPVDD-SLSGTTACCAVLQGRTLYIANVGDSRAV--------------VAERPAAGSK-----------------AASEGSEGAGSSSGSGATELVARDLSQDQTPFRLDECHRVLQAGARVLTL------------------------DQLEGLKDPGLPCWTNEADCDGDPPRLWSPNGMFPGTAFTRSIGDSAAEDIGVIPDPEVLATQLGPQH-AFVVLATDGVWEFISSQ 337          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A7S0BX79_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX79_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.260e-19
Identity = 99/326 (30.37%), Postives = 136/326 (41.72%), Query Frame = 1
Query:  127 KAKVGVYSIAGEKVH---DPSWKNQDAGLAIAPVGRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVS-AFRSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSA 1092
            K  V  YS   +K H   +P  KNQDA L +A         +  + DGHG +G   ++   + LP  + +    S +   A R +  R+ + L      D   SGTTL  AV+ G R+   N+GDS                 I GK      D T                               G+++AE L+ DHKP+   E ERI A+GG VF +   D                        GI             G PRVW    D PGLAMSRS+GD +AH+ GV  EPEI+E +LDP +D  ++ A+DG+W+ M +
Sbjct:   60 KCAVTEYSGVSKKGHAPYNPRKKNQDA-LILAEDAT-TNTLVLCVLDGHGEHGDGVASFIRDILPGEMFNHPSWSTDVKKAAREAILRVEQKLLCNFRIDTEFSGTTLSMAVIRGSRIYGVNIGDSRV---------------IIGK-----DDGT-------------------------------GKIIAEDLTFDHKPDCPEEKERILASGGRVFAVEYDD------------------------GID------------GPPRVWLGHMDVPGLAMSRSLGDAVAHTAGVISEPEITERELDPATDKFILCATDGLWEFMDS 296          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A1R2BZE2_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZE2_9CILI)

HSP 1 Score: 99.0 bits (245), Expect = 2.610e-19
Identity = 90/291 (30.93%), Postives = 121/291 (41.58%), Query Frame = 1
Query:  241 LFAIFDGHGVNGRQASNECLERLPKYLVS-AFRSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAEDIRKV 1110
            +FA+ DGHGVNG   S     R P  L+S  +    P  AL  SC RL++++ S    D   SG+T  + ++ G++L  ANVGDS  L                                G  L    G   N +              +A  LSRDHKP    E ERI  AGG V                   A+    G                    G  RVW    + PGLAMSRS GDK+A SVGV   PEI EF+++   D  +V+ SDG+++ ++ ED+ K+
Sbjct:  159 IFAVADGHGVNGEHVSGYIKNRFPLILLSNPYFLSAPIRALTASCIRLNKEINS-QDFDTNFSGSTFVSIIIRGKKLWCANVGDSRALL-------------------------------GRQLTDKTGTKGNCN------------HWMAIALSRDHKPNENDESERIYKAGGRV------------------EAYQDENGNP-----------------FGPSRVWLKSQNLPGLAMSRSFGDKVASSVGVICHPEILEFEIN-NDDKFIVIGSDGIFEFLTNEDVVKI 369          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A7S2UGJ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGJ7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.780e-19
Identity = 94/327 (28.75%), Postives = 141/327 (43.12%), Query Frame = 1
Query:  136 VGVYSIAGEKVH---DPSWKNQDAGLAIAPVGRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVS--AFRSG-NPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAED 1098
            V  YS   +K H   +P  KNQDA L +A         +  + DGHG +G   S    ++L   ++   A+ +    ASA   + Q+L   +      D   SGTTL  A++ G  +T  N+GDS  +          +G  + GK                                          +VAE L++DHKP++  E+ERI AAGG VF +   D                        GI             G PRVW    D PGLAM+RSIGD +AH+ GV  +PE +E +LDP +D  +++A+DG+W+ +++++
Sbjct:  105 VSEYSGVSKKGHAPYNPRKKNQDA-LVMADD-PSTNTLILCVLDGHGEHGDGVSAVFRDQLAAEMIHHPAWETDVKKASAF--AIQKLEDAVMRDFRIDTEFSGTTLSMAIIRGNTITGVNIGDSRVI----------IGKEVDGK------------------------------------------MVAEELTQDHKPDTPKEMERILAAGGRVFAVEYDD------------------------GID------------GPPRVWLGHMDVPGLAMARSIGDAVAHTAGVISDPEFTERELDPATDRFVIVATDGLWEFITSDE 339          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A835YZ58_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ58_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.150e-19
Identity = 88/274 (32.12%), Postives = 119/274 (43.43%), Query Frame = 1
Query:  349 ASALRRSCQRLHRDLASGAAGDCT--------------------RSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAA-AGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAEDIRK 1107
            A AL   C +L R+LAS    D +                    +SGTT C AV+    LTVANVGDS  L LL+   +P   P+                                                + +L+ DHKP    E +RI A+GG+V P P R      GG+ +   A   A G     G R   L +         RVW   GDGPGLAMSRS+GD +AH +GVT+EPE+ +  L    D +LV+ SDG+WD++  E++ +
Sbjct:  297 AEALAHVCAQLQRELASAPMVDASHLPCHHLDPANLNLNPLFAAQSGTTACIAVVEDGVLTVANVGDSRAL-LLQHASTPGTPPS----------------------------------------------WTSLQLTADHKPNVDSERQRILASGGLVGPTPERAVMNCQGGAPLAGAAAAAAEG-----GARRGRLPS---------RVWMPAGDGPGLAMSRSLGDLVAHQIGVTHEPEVCQRVLS-AGDRVLVVGSDGIWDMLPNEEVTE 508          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A2R5GV65_9STRA (Protein phosphatase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GV65_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.590e-19
Identity = 93/316 (29.43%), Postives = 126/316 (39.87%), Query Frame = 1
Query:  169 HDPSWKNQDAG-LAIAPV-GRGEGQALFAIFDGHGVNGRQASNECLERLPKYLVSAFRSGNP---ASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAEDI 1101
            ++P  +NQD+  +   PV G   G+ L  +FDGHG NG   S     RL   L SA +        S L  +   +  +L      D T SGTT    +L G  L VAN+GDS   + + +     V P                                  PG        RGR+ AE LS DHKP+   E  RI  AGG VF +   D                        GI             G  RVW +  D PGLAMSRS+ D +    GV    E+   +L P  D  +VLA+DG+W+ M+++++
Sbjct:  365 YNPDKQNQDSVVMQQLPVNGYCNGELLLCVFDGHGENGHHVSRRFAARLSTVLSSAPKFAQDEFTGSVLADALITIENELIQDRTIDTTLSGTTAVVTILRGSTLFVANIGDSRIAKGVYKKDKNGVYP---------------------------------QPG--------RGRIYAENLSEDHKPDLERERNRIVKAGGRVFAMKYDD------------------------GID------------GPARVWLSYADMPGLAMSRSLCDTIGKEAGVVSHAELFAHELQPGRDKFIVLATDGLWEFMTSQEV 603          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A835ZAZ3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.120e-18
Identity = 61/142 (42.96%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  676 GRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRS-DVMLVLASDGVWDVMSAED 1098
            G LVAE LS DHKP++  E ERI AAGG VF +   D                        G+             G PRVW    D PGLAMSRS+GDK+AH+ GV+ EPE    +LDP + DV+L+LA+DG+W+ MS E+
Sbjct:  226 GALVAEPLSVDHKPDAEAERERILAAGGRVFAVEYED------------------------GLD------------GPPRVWLGHMDVPGLAMSRSLGDKVAHTAGVSSEPEFFTRELDPSAGDVLLILATDGLWEFMSNEE 331          
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Match: A0A087SFG7_AUXPR (PPM-type phosphatase domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFG7_AUXPR)

HSP 1 Score: 96.7 bits (239), Expect = 3.820e-18
Identity = 90/258 (34.88%), Postives = 109/258 (42.25%), Query Frame = 1
Query:  337 SGNPASALRRSCQRLHRDLASGAAG-DCTRSGTTLCAAVLNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGGNSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQAAGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFGAGVPRVWRA--GGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVMLVLASDGVWDVMSAEDI 1101
            +G P  AL  +C  +H  L  G AG D + SGTT C A+L GRRL VANVGDS  +                                   +R G              AGG      A RL+RD KP+   E  RI AAGG V                                   + LT   D    VPRV+ A  G   PGLAMSRS+GD  AH++GV   P ++   L+ R D+ LVLASDGVWDVMS  D+
Sbjct:  100 AGVPGQALAAACLEVHAGLVQGDAGLDASASGTTACVALLAGRRLLVANVGDSRAVL----------------------------------VRAG--------------AGGGNAPAEALRLTRDAKPDDPEEAARIAAAGGSV-----------------------------------RRLTDDPDD---VPRVFAADPGSTTPGLAMSRSLGDAAAHTLGVCATPRLTGHVLEER-DLALVLASDGVWDVMSDADV 270          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E8_ECTSI3.400e-12358.03PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YTT3_9STRA3.400e-3035.47Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A2P6TSH7_CHLSO3.230e-2330.55Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
A0A7S0BX79_9STRA1.260e-1930.37Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1R2BZE2_9CILI2.610e-1930.93PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2UGJ7_9STRA2.780e-1928.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835YZ58_9STRA3.150e-1932.12Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A2R5GV65_9STRA6.590e-1929.43Protein phosphatase, putative n=1 Tax=Hondaea ferm... [more]
A0A835ZAZ3_9STRA3.120e-1842.96Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A087SFG7_AUXPR3.820e-1834.88PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2628485..2630985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score378.3
Seed ortholog evalue4.2e-102
Seed eggNOG ortholog2880.D7G8E8
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-14_002780.1
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Exons5
Model size1111
Cds size1110
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15693.1prot_C-linearis_contig8.15693.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2628485..2630985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.0534205-CDS-C-linearis_contig8:2628484..26286191622930552.0534205-CDS-C-linearis_contig8:2628484..2628619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2628485..2628619 -
1690881128.3989134-CDS-C-linearis_contig8:2628484..26286191690881128.3989134-CDS-C-linearis_contig8:2628484..2628619Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2628485..2628619 -
1622930552.078714-CDS-C-linearis_contig8:2628931..26295441622930552.078714-CDS-C-linearis_contig8:2628931..2629544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2628932..2629544 -
1690881128.4290807-CDS-C-linearis_contig8:2628931..26295441690881128.4290807-CDS-C-linearis_contig8:2628931..2629544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2628932..2629544 -
1622930552.0934691-CDS-C-linearis_contig8:2629981..26300841622930552.0934691-CDS-C-linearis_contig8:2629981..2630084Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2629982..2630084 -
1690881128.4432604-CDS-C-linearis_contig8:2629981..26300841690881128.4432604-CDS-C-linearis_contig8:2629981..2630084Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2629982..2630084 -
1622930552.1091354-CDS-C-linearis_contig8:2630342..26304361622930552.1091354-CDS-C-linearis_contig8:2630342..2630436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2630343..2630436 -
1690881128.454028-CDS-C-linearis_contig8:2630342..26304361690881128.454028-CDS-C-linearis_contig8:2630342..2630436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2630343..2630436 -
1622930552.1241612-CDS-C-linearis_contig8:2630820..26309851622930552.1241612-CDS-C-linearis_contig8:2630820..2630985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2630821..2630985 -
1690881128.465822-CDS-C-linearis_contig8:2630820..26309851690881128.465822-CDS-C-linearis_contig8:2630820..2630985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2630821..2630985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15693.1

>prot_C-linearis_contig8.15693.1 ID=prot_C-linearis_contig8.15693.1|Name=mRNA_C-linearis_contig8.15693.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=370bp
GSGSRIESGSTVVAPRYRPAASSSKNVAVRLEGRQWVSAGSKKAKVGVYS
IAGEKVHDPSWKNQDAGLAIAPVGRGEGQALFAIFDGHGVNGRQASNECL
ERLPKYLVSAFRSGNPASALRRSCQRLHRDLASGAAGDCTRSGTTLCAAV
LNGRRLTVANVGDSGCLRLLRRTPSPDVGPAIAGKPSAASSDATAAAAGG
NSLRRGMGVAENVSPGAGNRAGGSRGRLVAERLSRDHKPESVGELERIQA
AGGVVFPLPRRDAAAGGGSGVIKTAFPPAGGRHQATGIREQELTTARDFG
AGVPRVWRAGGDGPGLAMSRSIGDKMAHSVGVTYEPEISEFDLDPRSDVM
LVLASDGVWDVMSAEDIRKV
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mRNA from alignment at C-linearis_contig8:2628485..2630985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15693.1 ID=mRNA_C-linearis_contig8.15693.1|Name=mRNA_C-linearis_contig8.15693.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2501bp|location=Sequence derived from alignment at C-linearis_contig8:2628485..2630985- (Chordaria linearis ClinC8C monoicous)
GGGTCCGGGTCTCGGATTGAATCGGGTTCTACCGTTGTAGCGCCTCGGTA CCGACCGGCCGCCTCGTCGTCTAAGAACGTCGCAGTCAGGCTAGAGGGCC GACAGTGGGTTTCGGCTGGGTCCAAGAAGGCAAAAGTGGGGGTATACTCC ATCGCCGGAGAAAAGGTGAACACCGATATTTTATGTGATTCTACATTCTT GCGATTTGTGGGGTGGAAAGGGAGTTCTACTCACACACGAGCTTGTCGTT CCCACCCCGTGCCAGTTTTCGTGAAGGTCGAAGCTCTGTTCTGTTAAAAC CAGGACGAAAAGTTCAATGTTGCACTCCAAAGTCTGAGGGCTTCGTCAAG GTTGTGTAGTTTTGTACGATCGAGGCCCGCATGTCTCTCGGCCTCCTCTC TCCCGTGAAAGTTTGGCCTTGAGTGCCAATTCAGTTTACCTTGTGAATGT AAGACACATGAAGCCTACTCGCTCCATATACACTTGGAAGCCGCAACATT CTTCGATTGCCCTGTCTACTGCACTCAATCATTGTTGGTGTGTGAACAGG TGCACGACCCTTCTTGGAAGAACCAGGATGCCGGCCTCGCTATTGCACCT GTCGGTCGAGGGGAGGGTCAGGCTTTGTTTGCCATTTTTGACGGTGACAA AACTTAGCGAAAGTAATAGCGGTACTTTTTTTCTAGCCAACGAAGTGATA TTATAGGAACATACCCACGACCATGGCGGCGTGCCACGCACTTGTGTAGC TGACATCGAAGAACCCCTTAAAGAGGGTCGTTTCCATCACAGTTATTGCT CTTGGGTCAACCCTACTTCTTACAGAATGGCGAATATTCGGTCCTTCAGA CCAGGTCTTGATGGGCACATAGATGCCTAACCAGTTTGCTTTCGTCTTCA GGTCACGGGGTGAATGGGCGACAGGCATCCAATGAGTGCCTGGAGCGTCT ACCCAAGTATCTGGTGTCAGCTTTCCGATCAGGAAATCCCGCCTCGGCCC TCCGGTGAGGGTTACACGTCTTGAACTTGGCCTTTCTCGAATATTCGACA CGGGGGCCACCGAGCGCACAGCACTTGCGCACGCTGCCGATGCCAAACTC ACGTCGCGCATGTATGCGTACAGCAGTAGTACTTTAAGCCTTGTACGGGT CCGACATGAGAAACAGGCGACGTGATCATTGTCTGTGTAATTTGAGAGAG ACCAGACGTGCGGCCAGGTACAATCGTTTCCTTGTCCGAGAAAGACCCAA CAAGCAACAGAAAAATCTGGGGTGAAACTACTTTGTGTACATTTCCCCCC CTCCGCTCTACCCAACGGACAAAGCTTGTCGCTATCGATCCCAGCAAGAA AGCTGCTCAGTTCAACATCCACGCGCTGGAATACTACGACCGCTCTGACC GTCACCCTGTTCCACACCCCGACCGACTTGAAACAATCCAGGCGCAGCTG CCAGCGACTGCATCGCGATCTCGCCTCTGGTGCTGCCGGAGACTGCACGC GCAGCGGCACGACCCTGTGCGCAGCGGTCCTCAACGGCCGGCGGCTCACG GTGGCTAACGTGGGCGACTCCGGCTGCTTGCGTCTTTTGCGTCGCACACC CTCCCCGGACGTTGGCCCTGCTATCGCCGGAAAGCCCAGCGCTGCGAGTA GCGACGCTACCGCAGCGGCCGCGGGGGGGAACAGTCTGAGGAGAGGGATG GGAGTGGCGGAGAACGTATCACCGGGCGCCGGCAATAGAGCGGGTGGCAG CCGGGGGAGACTGGTCGCGGAGCGCCTTTCGCGCGATCACAAACCGGAGA GTGTGGGCGAGCTAGAGAGGATCCAGGCCGCCGGCGGTGTTGTCTTCCCT TTGCCCAGGAGAGACGCCGCTGCTGGAGGGGGCAGTGGCGTAATCAAAAC GGCCTTCCCGCCGGCGGGAGGGCGTCACCAAGCAACCGGAATCCGGGAGC AGGAGCTGACGACTGCGAGAGACTTCGGGGCGGGGGTCCCGAGGGTTTGG AGGGCCGGCGGTGACGGCCCAGGACTGGCGATGAGCCGGTCCATCGGAGA CAAGGTGATCTTGGTGCTCCGCGTGCCTTTCGATGTTACTGCTGGTGGAT ATGCTGGCGCCCTCGAACTTGTTCCGCTCTCTCCTTTGGTTTTTTGTTTT GCTTGAATCTCCGTGTTCGTTTGAGACGCCCCACATCCCACGTTGTTCGA CGTTGCAGCTAGATCGCCGGCTGATATATTATGAACGGGTACGTGGGGTC GAAAGGTTGGTACCGAAAGATTGCTGTGCTTCTGTGCTTGTGTTCGCTTT TGCCCCTGTCCCAAACCTACGACAACCTGCGCTCACCGGGCTCATTTTTA AACATCTTTCTGCCAGATGGCCCACAGCGTGGGCGTTACTTACGAACCCG AGATTTCCGAGTTCGACTTAGACCCGCGAAGCGACGTGATGCTGGTGCTC GCATCCGATGGCGTGTGGGATGTCATGAGCGCGGAAGATATTCGCAAGGT A
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Coding sequence (CDS) from alignment at C-linearis_contig8:2628485..2630985-

>mRNA_C-linearis_contig8.15693.1 ID=mRNA_C-linearis_contig8.15693.1|Name=mRNA_C-linearis_contig8.15693.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at C-linearis_contig8:2628485..2630985- (Chordaria linearis ClinC8C monoicous)
GGGTCCGGGTCTCGGATTGAATCGGGTTCTACCGTTGTAGCGCCTCGGTA
CCGACCGGCCGCCTCGTCGTCTAAGAACGTCGCAGTCAGGCTAGAGGGCC
GACAGTGGGTTTCGGCTGGGTCCAAGAAGGCAAAAGTGGGGGTATACTCC
ATCGCCGGAGAAAAGGGGTCCGGGTCTCGGATTGAATCGGGTTCTACCGT
TGTAGCGCCTCGGTACCGACCGGCCGCCTCGTCGTCTAAGAACGTCGCAG
TCAGGCTAGAGGGCCGACAGTGGGTTTCGGCTGGGTCCAAGAAGGCAAAA
GTGGGGGTATACTCCATCGCCGGAGAAAAGGTGCACGACCCTTCTTGGAA
GAACCAGGATGCCGGCCTCGCTATTGCACCTGTCGGTCGAGGGGAGGGTC
AGGCTTTGTTTGCCATTTTTGACGGTGCACGACCCTTCTTGGAAGAACCA
GGATGCCGGCCTCGCTATTGCACCTGTCGGTCGAGGGGAGGGTCAGGCTT
TGTTTGCCATTTTTGACGGTCACGGGGTGAATGGGCGACAGGCATCCAAT
GAGTGCCTGGAGCGTCTACCCAAGTATCTGGTGTCAGCTTTCCGATCAGG
AAATCCCGCCTCGGCCCTCCGGTCACGGGGTGAATGGGCGACAGGCATCC
AATGAGTGCCTGGAGCGTCTACCCAAGTATCTGGTGTCAGCTTTCCGATC
AGGAAATCCCGCCTCGGCCCTCCGGCGCAGCTGCCAGCGACTGCATCGCG
ATCTCGCCTCTGGTGCTGCCGGAGACTGCACGCGCAGCGGCACGACCCTG
TGCGCAGCGGTCCTCAACGGCCGGCGGCTCACGGTGGCTAACGTGGGCGA
CTCCGGCTGCTTGCGTCTTTTGCGTCGCACACCCTCCCCGGACGTTGGCC
CTGCTATCGCCGGAAAGCCCAGCGCTGCGAGTAGCGACGCTACCGCAGCG
GCCGCGGGGGGGAACAGTCTGAGGAGAGGGATGGGAGTGGCGGAGAACGT
ATCACCGGGCGCCGGCAATAGAGCGGGTGGCAGCCGGGGGAGACTGGTCG
CGGAGCGCCTTTCGCGCGATCACAAACCGGAGAGTGTGGGCGAGCTAGAG
AGGATCCAGGCCGCCGGCGGTGTTGTCTTCCCTTTGCCCAGGAGAGACGC
CGCTGCTGGAGGGGGCAGTGGCGTAATCAAAACGGCCTTCCCGCCGGCGG
GAGGGCGTCACCAAGCAACCGGAATCCGGGAGCAGGAGCTGACGACTGCG
AGAGACTTCGGGGCGGGGGTCCCGAGGGTTTGGAGGGCCGGCGGTGACGG
CCCAGGACTGGCGATGAGCCGGTCCATCGGAGACAAGGCGCAGCTGCCAG
CGACTGCATCGCGATCTCGCCTCTGGTGCTGCCGGAGACTGCACGCGCAG
CGGCACGACCCTGTGCGCAGCGGTCCTCAACGGCCGGCGGCTCACGGTGG
CTAACGTGGGCGACTCCGGCTGCTTGCGTCTTTTGCGTCGCACACCCTCC
CCGGACGTTGGCCCTGCTATCGCCGGAAAGCCCAGCGCTGCGAGTAGCGA
CGCTACCGCAGCGGCCGCGGGGGGGAACAGTCTGAGGAGAGGGATGGGAG
TGGCGGAGAACGTATCACCGGGCGCCGGCAATAGAGCGGGTGGCAGCCGG
GGGAGACTGGTCGCGGAGCGCCTTTCGCGCGATCACAAACCGGAGAGTGT
GGGCGAGCTAGAGAGGATCCAGGCCGCCGGCGGTGTTGTCTTCCCTTTGC
CCAGGAGAGACGCCGCTGCTGGAGGGGGCAGTGGCGTAATCAAAACGGCC
TTCCCGCCGGCGGGAGGGCGTCACCAAGCAACCGGAATCCGGGAGCAGGA
GCTGACGACTGCGAGAGACTTCGGGGCGGGGGTCCCGAGGGTTTGGAGGG
CCGGCGGTGACGGCCCAGGACTGGCGATGAGCCGGTCCATCGGAGACAAG
ATGGCCCACAGCGTGGGCGTTACTTACGAACCCGAGATTTCCGAGTTCGA
CTTAGACCCGCGAAGCGACGTGATGCTGGTGCTCGCATCCGATGGCGTGT
GGGATGTCATGAGCGCGGAAGATATTCGCAAGGTAATGGCCCACAGCGTG
GGCGTTACTTACGAACCCGAGATTTCCGAGTTCGACTTAGACCCGCGAAG
CGACGTGATGCTGGTGCTCGCATCCGATGGCGTGTGGGATGTCATGAGCG
CGGAAGATATTCGCAAGGTA
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