mRNA_C-linearis_contig8.15658.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: D8LI98_ECTSI (Stc1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI98_ECTSI) HSP 1 Score: 206 bits (523), Expect = 2.120e-63 Identity = 157/191 (82.20%), Postives = 164/191 (85.86%), Query Frame = 1
Query: 139 MDAVGGSWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAGGGSSGAEGKGEPLSCSVCKQQ-LPAASFTNTQARKADASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAEKVTGLKPLVGAGKRGGRGRG 708
MDAVGGSWAGTL CSECRRKRLT ESFS QL+KLREGK+AEDK+KCKEC KAATEERERA S+ SKA S+G EGK EPLSCS CKQ+ LP +SFTNTQARK DASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARLKAASAECAREAEKVTGLKPLVGAGKRGGRG G
Sbjct: 1 MDAVGGSWAGTLACSECRRKRLTAESFSANQLRKLREGKLAEDKVKCKECVAKAATEERERA-SQNSKAS--SNGGEGKDEPLSCSACKQKSLPRSSFTNTQARKPDASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKGAAGAAARLKAASAECAREAEKVTGLKPLVGAGKRGGRGPG 188
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A6H5KHQ9_9PHAE (Stc1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ9_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.420e-45 Identity = 92/123 (74.80%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 112 IGQTREEEKMDAVGGSWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAGGGSSGAEGKGEPLSCSVCKQQ-LPAASFTNTQARKADASRKCRD 477
IGQ R +MDAVGGSWAGTL CSECRRKRLT ESFS QL+KLREGK+AEDK+KCKEC KAATEERERA S+ SKA S+ EGK EPLSCSVCKQ+ LP +SFTNTQARK + SRKCRD
Sbjct: 13 IGQLRT--RMDAVGGSWAGTLACSECRRKRLTAESFSANQLRKLREGKLAEDKVKCKECVAKAATEERERA-SENSKAS--SNDGEGKDEPLSCSVCKQKRLPRSSFTNTQARKPETSRKCRD 130
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A7S2ANV4_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2ANV4_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 6.820e-13 Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 160 WAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAGGGSSGAEGKGEPLSCSVCKQQLPAASFTNTQARKADASR 465
WAGTL+CS C+R+R+ GE FS KQ++K + A LKCK C A ERE+AA++ G S+G + + L+C+ CK ++ +F+ Q K DA R
Sbjct: 18 WAGTLSCSVCKRERMLGEEFSKKQIEKRKSNPRAP--LKCKSCVDAEALAEREQAAARKKSEAGASAGQSSESDVLTCACCKCEMSTENFSRKQLSKGDARR 117
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A7S0JH32_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JH32_9EUKA) HSP 1 Score: 69.3 bits (168), Expect = 7.240e-11 Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 1
Query: 160 WAGTLTCS-ECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTS-KAGGGSSGAEGKGEPLSCSVCKQQLPAASFTNTQARKADASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAEKVTGLKPLVGAGKRGGRGRG 708
WAG+ C+ EC RKRL G FS L+K R K A ++CK C +AA ERE+AA + + + G+ G + + +CS C+ LPA++F TQ K ++C+ +L A++ A EAE+VTGLKP++ RGGRGRG
Sbjct: 4 WAGSFDCAGECHRKRLVGSEFSKAMLEKRR--KDASLPIRCKSCVEEAAVREREQAAKRQAERIAEGAGGDKFCQDQHTCSACEIVLPASAFNRTQLSKGTEKQRCQQCVGRSEQEASAAVEERQKVALADAKAALRRAEASGSVVE----KLTASATHAALEAERVTGLKPVILG--RGGRGRG 180
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A6U1C738_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C738_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.090e-10 Identity = 57/174 (32.76%), Postives = 72/174 (41.38%), Query Frame = 1
Query: 157 SWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAGGGSSGAEGKGEPLSCSVCKQQLPAASFTNTQARK-ADASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAEKVTGLKPLV 675
SWAG CS CRRKRL FS QL K R+ + L CK C ER AA++T + A G+ E C+ CK++LPA F Q RK ++C+ + AA+AECA EAE VTGLKP+V
Sbjct: 3 SWAGDFECSRCRRKRLIAAEFSRAQLDKARKAQGGVIPLTCKRCVEADQASERAAAAAQTH-----AMPAAGEDELHECAACKERLPALRFNKNQLRKKGPGKQRCQACVEAAEASASSAAGDAKREKLAGLRQDAKRAEAVGSAVD----KAVAAAAECAAEAELVTGLKPMV 167
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A7S4C1J3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1J3_CHRCT) HSP 1 Score: 66.2 bits (160), Expect = 1.300e-9 Identity = 55/186 (29.57%), Postives = 79/186 (42.47%), Query Frame = 1
Query: 124 REEEKMDAVGG--SWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAGGGSSGAEGKGEPLSCSVCKQQLPAASFTNTQARKADASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAEKVTGLKPLV 675
+ EK GG +WAG C+ C R+RL G FS L+K R+ A L+CK+C AA ERE+AA + ++ + E +CS CK LP ++F TQ K ++C+ +L ++A A EAE+VTGLKP+V
Sbjct: 18 KSTEKGVLSGGMAAWAGNFDCASCGRQRLIGAEFSKNMLEKKRKDPKAT--LRCKQCVESAAAAEREQAAKRQAERAPAADD-----EKHTCSACKAALPTSAFNRTQLSKGPEKQRCQQCVAASEQESQAAVEERQRKALSEAKTAMQRAEASGSVAE----KLATSAAHAALEAERVTGLKPVV 192
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A7S0Q163_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q163_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 4.900e-9 Identity = 58/184 (31.52%), Postives = 81/184 (44.02%), Query Frame = 1
Query: 160 WAGTLTCS-ECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASK-TSKAGGGSSGAEGKGEPLSCSVCKQQLPAASFTNTQARKADASRKCRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLKAASAECAREAEKVTGLKPLV-GAGKRGGRG 702
WAG C+ EC RKRL G FS L + R A ++CK C +AA ERE+AA + T +A +S E +CSVC+ LPA++F +Q K ++C+ +L ++ A EAE+VTGLKP+V G G+ GRG
Sbjct: 4 WAGNFECAGECGRKRLVGSEFSKSMLDRRRRDLNAP--IRCKTCVEEAAAAEREQAAKRQTQRAANEASADTAADEQHTCSVCQLGLPASAFNRSQLSKGAGKQRCQKCVATNEQEASAAVEERQKAALAEAKVAMQRAEASGSVAQ----KLATSATHAALEAERVTGLKPVVLGRGRSRGRG 181
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Match: A0A7S3PW95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW95_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7 Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 148 VGGSWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECTLKAATEERERAASKTSKAG-GGSSGAEGKG----------EPLSCSVCKQQLPAASFTNTQARK 450
V WAG CS CRRKRL GE FS K L++ R+ LKCK+CT +ER A K + + GG+SG G G E ++C+ CK+ L + F Q K
Sbjct: 6 VTDKWAGIFDCSVCRRKRLIGEEFSKKALERHRK---TGGPLKCKKCTSDQQEKERLEAERKRASSSIGGTSGVNGNGNGDKNDAKSSEQVTCAACKKALDPSKFKRNQLSK 114 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15658.1 >prot_C-linearis_contig8.15658.1 ID=prot_C-linearis_contig8.15658.1|Name=mRNA_C-linearis_contig8.15658.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp MDAVGGSWAGTLTCSECRRKRLTGESFSGKQLQKLREGKIAEDKLKCKECback to top mRNA from alignment at C-linearis_contig8:2280807..2282748+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15658.1 ID=mRNA_C-linearis_contig8.15658.1|Name=mRNA_C-linearis_contig8.15658.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1942bp|location=Sequence derived from alignment at C-linearis_contig8:2280807..2282748+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2280807..2282748+ >mRNA_C-linearis_contig8.15658.1 ID=mRNA_C-linearis_contig8.15658.1|Name=mRNA_C-linearis_contig8.15658.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig8:2280807..2282748+ (Chordaria linearis ClinC8C monoicous)back to top |