mRNA_C-linearis_contig8.15599.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15599.1
Unique NamemRNA_C-linearis_contig8.15599.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15599.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.080e-67
Identity = 120/166 (72.29%), Postives = 133/166 (80.12%), Query Frame = 2 
Query:  284 MDDPLQPTCCAGMQAMGTLLGTMGGFVSAALLTPIHGREQEHGLPAAPGVVIGSSLGVLAAHSAGEGNQPLRQLANLLVLGVAAAAATTAACSWLVGEILQNGGSAGIIALATVASLGSTAAFTLLKHNTLLRRAAAVGALDDRDDHDVLPPTHAECAPLMCSKDI 781
            MDD LQPTC AGMQAMGTLLGTM GFVSAALLTPI G E+EHGLPAAPGV++GSSLGVLAA+SAGEG QPLRQL  LL+L V AAA TTAACSWL G++LQNGGS GI+ LATVASLGSTA FT+ KHN LL RAA   A DDR+ H+ LP  H +   LM  K +
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLP--HLQEESLMDLKAV 164
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI1.080e-6772.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1741604..1744792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Exons4
Model size1362
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15599.1prot_C-linearis_contig8.15599.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1741887..1744214 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.4117055-UTR-C-linearis_contig8:1741603..17418861622930533.4117055-UTR-C-linearis_contig8:1741603..1741886Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1741604..1741886 +
1690881118.376913-UTR-C-linearis_contig8:1741603..17418861690881118.376913-UTR-C-linearis_contig8:1741603..1741886Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1741604..1741886 +
1622930533.4930277-UTR-C-linearis_contig8:1744214..17447921622930533.4930277-UTR-C-linearis_contig8:1744214..1744792Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1744215..1744792 +
1690881118.432948-UTR-C-linearis_contig8:1744214..17447921690881118.432948-UTR-C-linearis_contig8:1744214..1744792Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1744215..1744792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.425817-CDS-C-linearis_contig8:1741886..17419281622930533.425817-CDS-C-linearis_contig8:1741886..1741928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1741887..1741928 +
1690881118.3919444-CDS-C-linearis_contig8:1741886..17419281690881118.3919444-CDS-C-linearis_contig8:1741886..1741928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1741887..1741928 +
1622930533.4438913-CDS-C-linearis_contig8:1742135..17422431622930533.4438913-CDS-C-linearis_contig8:1742135..1742243Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1742136..1742243 +
1690881118.4015214-CDS-C-linearis_contig8:1742135..17422431690881118.4015214-CDS-C-linearis_contig8:1742135..1742243Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1742136..1742243 +
1622930533.4632401-CDS-C-linearis_contig8:1743224..17433801622930533.4632401-CDS-C-linearis_contig8:1743224..1743380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1743225..1743380 +
1690881118.4112346-CDS-C-linearis_contig8:1743224..17433801690881118.4112346-CDS-C-linearis_contig8:1743224..1743380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1743225..1743380 +
1622930533.476959-CDS-C-linearis_contig8:1744019..17442141622930533.476959-CDS-C-linearis_contig8:1744019..1744214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1744020..1744214 +
1690881118.4212613-CDS-C-linearis_contig8:1744019..17442141690881118.4212613-CDS-C-linearis_contig8:1744019..1744214Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1744020..1744214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15599.1

>prot_C-linearis_contig8.15599.1 ID=prot_C-linearis_contig8.15599.1|Name=mRNA_C-linearis_contig8.15599.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp
MDDPLQPTCCAGMQAMGTLLGTMGGFVSAALLTPIHGREQEHGLPAAPGV
VIGSSLGVLAAHSAGEGNQPLRQLANLLVLGVAAAAATTAACSWLVGEIL
QNGGSAGIIALATVASLGSTAAFTLLKHNTLLRRAAAVGALDDRDDHDVL
PPTHAECAPLMCSKDI*
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mRNA from alignment at C-linearis_contig8:1741604..1744792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15599.1 ID=mRNA_C-linearis_contig8.15599.1|Name=mRNA_C-linearis_contig8.15599.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3189bp|location=Sequence derived from alignment at C-linearis_contig8:1741604..1744792+ (Chordaria linearis ClinC8C monoicous)
GGCGAGGCCGTTGAAATCGGAGCCCTCGCAGCAAGACGTACCCATCTGGC
GGCCTTTTTAATCCCTCGATTTCGCCGGGGGAATACTCCGGTGTGAACGT
CATTACCAGGGTGGAGAGGGCGAGAAGGAGGGAAGGAAGCCTCGACCCCT
GAACTGCCGGAGATGAATGCGGCGCAATTCCTGTTTCAAAAAACGTACGG
TACATACAGAAGATCAAGATCGACACACGCCAGCGGCCGTACACCGTACA
CCGTGAACGCGGCCTTCGGGCTGCAACACAAACATGGATGACCCGCTCCA
ACCAACGTGCTGCGCAGGAATGCAGGTGATAGCCCCAAAATCTATTGACG
AATTCTGAAAGTAGTACCGTCAGTCCTCAGATCAAAAGAAGGCACGGCTA
GCGGCCGCCAAACTGGGGACGCGTGTCCTACGCACATATATAGGGGTGGA
TGTGTGGATATAAGCATGTTTGCTGTATGGGTTAGTGATGCTGGATGAAA
CGGATGTGCCTGCTGCTTTCCCCCCGATACAGGCGATGGGCACATTGCTG
GGAACAATGGGCGGCTTCGTGTCTGCTGCCCTCCTGACCCCAATCCACGG
CAGGGAGCAAGAACACGGCTTGCCAGCAGCGCCTGGTGTGGTGAGCGATG
CATTTACTTTGCTATCACCAACGTGTTCTCCCCAAACAGGCAGTTCGATT
GACCTTTGCGACATCTCTCATCATGCAAGTCCCGGCAGATGCCTCCTCAC
ATTGTAGGTACCAACAAGGCGGCCAATCCGTGGGGGGGGCTACTTCGAAG
TAGACTACAACAAGGGGGCCAATCCGTGGGGGGGGCGGCTACCCCGCGAG
TCGAAAAACAAGCCGATCGAACTAGGCAGTGTTACCCCACGAGTTGAGAA
GTAAGTCGATCCAAGTTGGGTAGTGTTGAGGATGCCAGGTGGGCGAGGGT
AGATGGATTCCGGCGAGTCGGGTCCCGAAAAAAAATCCAAAAAAGTTCAA
ACCTCGCGCGGCGCCTGCCGACGGGGCGGCTCCGCGGCGGGCCCCAAAGA
GCCGGATTCCGTTTGACTTGAAAAATGGACGGGCGTGAGGCCACCGCGCG
GTCCGGCGGCGACTTCGGGCGGCCGCAGCTCGGCCCCGCGGTCGAGCCCG
CGCCGCGACCGGCAGACTCCGGCGAGTCTACTCCCGTTTTTTTTTCGGAA
AACGTCGAGCCTCGAGGCGCGGCGGGCGCGAAACCCGCCGGGGCGGCGGG
AAAACATTGAATATTATATATATATATATATATCTACTGACGTATGTGGT
TTTGGTGTGCACGCTGCCAAGTTGATTGAGAGACGTTTGCAAGTCTTGGC
TTATTTCTTGTCGCTCTTGCACACACACCTGTTGCGGTTTGGGTAACGTT
TGGTCCAAAAATGGTATCGCATCATTCCCGCAGCTTTGTTTGGTGGCTTT
CCAAGAATCCTAGACAAGCTCTCGTTTTCGGCAGAAGAAGCGACCAACCG
ATCAAGAATCCCGAGCAACTAGACTACTTGTGTAGTGTGTCGGCGCCGCT
CACCTCATCAGCCAGAAAAACTCCAAACCGCTGATTGGTCATGATTGCAC
TGCTATGTTACCTTGTTGCAGGTCATCGGATCTTCGCTCGGAGTGCTCGC
GGCTCACTCAGCGGGCGAAGGGAACCAGCCCCTCCGACAGCTGGCCAACC
TCCTAGTTCTCGGTGTAGCGGCGGCGGCAGCAACGACAGCAGCATGTAGC
TGGCTAGTGGGCGAAATTCTGCAAAACGTGAGAGCCTCTAAATTGTCTGT
TTTTGGCTGCACTACTGCTGTTCTTTGCTCATGTATTACGACGACCACTA
GGCCGGTCGCCCCGGTGGACTAGTGGTTTAGCTTCGAACGCACTAGCAGC
AAAGTCTGGAGCTCAATTCCAAGCAAAGGTGTTTATTTTGCGACTTTGCC
GGTGAAAGCGATAACATAGCTGAAAAAGCTCGTGAGTACCAAACTTCGAC
TTAACACGTTGACGAGGGAAAGAGATGGCTGCACCCTTCTCGCGATAAAA
TCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAA
AGAAGAAAAAAGCCCCGGTGTTTACCCCCTCCTGTGTGACCCCGGTTGAT
TCTGGTTGTACAGAAAAATACACTGAACAAGTGTAGCACTCTAAATACAC
CGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAGGGACTGTCGCCAAA
ATAAATGGGACGAAAACACACACACACACACACACTATTATACCCAACCA
AGCATCCAAACGGGAAATAGTTTATGTCAGCGCGGACACGTTCAGCACAC
CCTCCTAGTACTAAACAGGCGCCCCCTACACCCTCCTCCCACTATTTTCT
GCTTTTTGCTGCACAGGGCGGAAGCGCCGGCATCATAGCCTTGGCGACGG
TGGCGAGCTTGGGCTCGACGGCGGCGTTTACTTTGCTCAAGCACAACACG
CTGCTCAGAAGAGCTGCAGCGGTGGGAGCACTTGACGATCGAGATGATCA
TGACGTGTTGCCGCCGACCCACGCTGAGTGTGCCCCATTGATGTGCTCCA
AGGATATCTAAAGCGCACGGAGCTCGTGGTAAGAAGTATGTACGGCCAAG
TCAGACTTGATAAGCTTTGGGGGGGGGGATATGGACGCCCCGGGAAAATC
CTCCCAAATGATGCGAGAACATGTGTACGAGGGTTTAGGTACAGGGTCTG
TTGACCTTGACGGTGTGTGTTCGTTTTCTGGGGGCCGGGTGTGATGATGC
TGGACCAAGGTTTAGTCTTCTCCCTTATGTGGCGGGTTTTTCGGGCCGCA
GATAACCACCGATTTTCGTGGGTCATACATCCGAAAAAATAGTACAGAGT
GTGTACGTGTTACTTTGCGTTTGGGGGATCGTATTCGGCAGTGCAGCCAT
GATTTTGAAGGGGAATGAGTAGGCGCTGCGCATTGTGCGAATCGCCCATG
GTGTACATACTTCCAAGTCGGAAGTTTCCGCTTCGAGCTTTACATGAGGT
CAAGTGCTCGACATGAGGTCAAGTGAAGCGGGGAGGTGGGTCGGTACCCT
GCAGCAGGTCAGCTCTAGCACCAGATCCGACCTGAACTACGCCCCCCCCC
CCCGTACTTTGCGGAAGTTCTGCAACCGGTGTGCTACAC
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Coding sequence (CDS) from alignment at C-linearis_contig8:1741604..1744792+

>mRNA_C-linearis_contig8.15599.1 ID=mRNA_C-linearis_contig8.15599.1|Name=mRNA_C-linearis_contig8.15599.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at C-linearis_contig8:1741604..1744792+ (Chordaria linearis ClinC8C monoicous)
ATGGATGACCCGCTCCAACCAACGTGCTGCGCAGGAATGCAGATGGATGA
CCCGCTCCAACCAACGTGCTGCGCAGGAATGCAGGCGATGGGCACATTGC
TGGGAACAATGGGCGGCTTCGTGTCTGCTGCCCTCCTGACCCCAATCCAC
GGCAGGGAGCAAGAACACGGCTTGCCAGCAGCGCCTGGTGTGGCGATGGG
CACATTGCTGGGAACAATGGGCGGCTTCGTGTCTGCTGCCCTCCTGACCC
CAATCCACGGCAGGGAGCAAGAACACGGCTTGCCAGCAGCGCCTGGTGTG
GTCATCGGATCTTCGCTCGGAGTGCTCGCGGCTCACTCAGCGGGCGAAGG
GAACCAGCCCCTCCGACAGCTGGCCAACCTCCTAGTTCTCGGTGTAGCGG
CGGCGGCAGCAACGACAGCAGCATGTAGCTGGCTAGTGGGCGAAATTCTG
CAAAACGTCATCGGATCTTCGCTCGGAGTGCTCGCGGCTCACTCAGCGGG
CGAAGGGAACCAGCCCCTCCGACAGCTGGCCAACCTCCTAGTTCTCGGTG
TAGCGGCGGCGGCAGCAACGACAGCAGCATGTAGCTGGCTAGTGGGCGAA
ATTCTGCAAAACGGCGGAAGCGCCGGCATCATAGCCTTGGCGACGGTGGC
GAGCTTGGGCTCGACGGCGGCGTTTACTTTGCTCAAGCACAACACGCTGC
TCAGAAGAGCTGCAGCGGTGGGAGCACTTGACGATCGAGATGATCATGAC
GTGTTGCCGCCGACCCACGCTGAGTGTGCCCCATTGATGTGCTCCAAGGA
TATCTAAGGCGGAAGCGCCGGCATCATAGCCTTGGCGACGGTGGCGAGCT
TGGGCTCGACGGCGGCGTTTACTTTGCTCAAGCACAACACGCTGCTCAGA
AGAGCTGCAGCGGTGGGAGCACTTGACGATCGAGATGATCATGACGTGTT
GCCGCCGACCCACGCTGAGTGTGCCCCATTGATGTGCTCCAAGGATATCT
AA
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