mRNA_C-linearis_contig8.15575.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15575.1
Unique NamemRNA_C-linearis_contig8.15575.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15575.1 vs. uniprot
Match: D7FPH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 5.930e-13
Identity = 60/145 (41.38%), Postives = 77/145 (53.10%), Query Frame = 2 
Query: 1295 RQEGGVWIDVDGTPMGRIHP-PQTGLGGSL-------------HPHHSRT-KGLRPMKKSISEAGGLGSYLEAASSARVSAIAAAEVSRGAIVGALGSIWGCLEVQPSPRARQP-PPPPLSPSYSYVNPE----LCVWGGVYSTE 1669
            R+EGG+WIDVDGTPMG I P P+TG+  SL             HP H R+ KGL   KK  +EAGG+G +LE  S+A     AAA  S+     AL ++  C+  +   R  +    P + P   Y+ PE    L VWGG  STE
Sbjct:    4 RREGGIWIDVDGTPMGEILPAPRTGVASSLLRLDSVGGDPPHHHPCHLRSNKGLYAGKKPTAEAGGVGGFLEGVSAAA----AAAASSKTWASDALWALVSCVGGEEEGRQEEMMSSPSILPYPGYMRPEEEEELSVWGGRTSTE 144
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BLAST of mRNA_C-linearis_contig8.15575.1 vs. uniprot
Match: A0A6H5K0X0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.300e-11
Identity = 83/234 (35.47%), Postives = 107/234 (45.73%), Query Frame = 2 
Query: 1160 DAGHARSCSSHSGSNIGSDD--AGSSRS-WGS----GGRTGGGSRRG-------SSCLYRQEGGVWIDVDGTPMG----------------RIHP----------------PQTGLGGSL-------------HPHHSRT-KGLRPMKKSISEAGGLGSYLEAASSARVSAIAAAEVSRGAIVGALGSIWGCLEVQPSPRARQPPPPPLSPSYSYVNPE----LCVWGGVYSTE 1669
            DA    S +S + SN GSDD  +GS RS WG+     G  GG  RRG       SS   R+EGGVWIDVDGTPM                 R+HP                P+TG+  SL             HP H R+ KGL P KKS +E GGLG +LE  S+A  +A ++   +  A+   +  + G  E +   + +    P + P   Y+ PE    L VWGG  STE
Sbjct:  514 DASERSSSNSPNRSNFGSDDNYSGSGRSVWGNEAEEDGWVGGRERRGGSGKIEHSSMFPRREGGVWIDVDGTPMDSVALSKLPLIPPSPPPRLHPDAAVALATNPGEILPAPRTGVESSLLRLDSVGSDPHHHHPRHPRSSKGLYPGKKSTNEVGGLGGFLEGVSAAAAAAASSKTWASDALWALVSCVGGEEEGK---QEKMMSSPSILPYPGYMRPEEEEELSVWGGRTSTE 744
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPH6_ECTSI5.930e-1341.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0X0_9PHAE5.300e-1135.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1503910..1507402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2893
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15575.1prot_C-linearis_contig8.15575.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1506291..1507303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.7352972-UTR-C-linearis_contig8:1503909..15054621622930529.7352972-UTR-C-linearis_contig8:1503909..1505462Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1503910..1505462 -
1690881116.5053456-UTR-C-linearis_contig8:1503909..15054621690881116.5053456-UTR-C-linearis_contig8:1503909..1505462Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1503910..1505462 -
1622930529.7574515-UTR-C-linearis_contig8:1506009..15062901622930529.7574515-UTR-C-linearis_contig8:1506009..1506290Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1506010..1506290 -
1690881116.5164852-UTR-C-linearis_contig8:1506009..15062901690881116.5164852-UTR-C-linearis_contig8:1506009..1506290Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1506010..1506290 -
1622930529.8137357-UTR-C-linearis_contig8:1507303..15074021622930529.8137357-UTR-C-linearis_contig8:1507303..1507402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1507304..1507402 -
1690881116.5432587-UTR-C-linearis_contig8:1507303..15074021690881116.5432587-UTR-C-linearis_contig8:1507303..1507402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1507304..1507402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.7733078-CDS-C-linearis_contig8:1506290..15063231622930529.7733078-CDS-C-linearis_contig8:1506290..1506323Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1506291..1506323 -
1690881116.5253706-CDS-C-linearis_contig8:1506290..15063231690881116.5253706-CDS-C-linearis_contig8:1506290..1506323Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1506291..1506323 -
1622930529.7884698-CDS-C-linearis_contig8:1506376..15073031622930529.7884698-CDS-C-linearis_contig8:1506376..1507303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1506377..1507303 -
1690881116.5342822-CDS-C-linearis_contig8:1506376..15073031690881116.5342822-CDS-C-linearis_contig8:1506376..1507303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1506377..1507303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15575.1

>prot_C-linearis_contig8.15575.1 ID=prot_C-linearis_contig8.15575.1|Name=mRNA_C-linearis_contig8.15575.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=320bp
MAGCRIISSGDSVGSSATLLVGAPEPLAANDRQQQQPPVSRSDSNQELWG
YWSGDHQDGRCSSRSRDSSVSTASYGDHQTDGGASSALLLHDPWFSLQGY
STVPIGQGGEEGSSVGLVVDTDTCATPPQQSVRCPLSDIAPQNPSPAFKA
VDMNIWQPVGPPGVGTPSGGGGGEGSGSKRTPEECAYLRHAGIENFDSNA
SSVENAFVSTALRLAAMKSMKSMKSSASTKTAAEGHEPAPSIAAIGSPAA
SIDTASESPSLPPPAPAGSTPLSSPSPPKDSASFLYSWPGGAQDTAASGP
FFGVAEVVGQQQQQQQQQW*
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mRNA from alignment at C-linearis_contig8:1503910..1507402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15575.1 ID=mRNA_C-linearis_contig8.15575.1|Name=mRNA_C-linearis_contig8.15575.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3493bp|location=Sequence derived from alignment at C-linearis_contig8:1503910..1507402- (Chordaria linearis ClinC8C monoicous)
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAAGAGAAGCAATGCGT
CGGGGGTTTTCCTGGAAGCGGCGGCAGTGGTGCAGGCCGGGGTATCCGAA
TGGCGGGATGCAGGATCATCAGCAGCGGCGACAGTGTCGGGAGCAGCGCA
ACCTTGCTCGTCGGTGCACCTGAGCCCCTTGCCGCCAACGACAGGCAACA
GCAGCAGCCGCCCGTGTCGCGCTCTGACTCTAACCAAGAGCTGTGGGGCT
ACTGGTCTGGTGACCACCAAGACGGAAGATGTAGTTCTCGCTCCAGGGAC
AGCAGCGTGTCGACCGCTTCCTACGGCGACCATCAGACGGACGGCGGCGC
CTCCTCCGCCTTGCTGCTGCACGATCCGTGGTTTTCGCTCCAAGGCTACA
GCACCGTCCCAATAGGCCAGGGGGGCGAAGAGGGGAGCAGCGTCGGCCTC
GTCGTCGACACGGACACTTGTGCTACGCCGCCGCAGCAAAGCGTTCGATG
CCCGCTGAGCGACATCGCCCCTCAGAACCCGTCTCCTGCTTTCAAGGCCG
TCGACATGAACATCTGGCAACCTGTCGGCCCTCCCGGCGTTGGCACGCCC
AGCGGCGGCGGCGGTGGCGAGGGCAGCGGCTCGAAGCGGACACCAGAAGA
GTGCGCGTACCTCAGGCACGCCGGCATAGAGAACTTCGACTCGAACGCCA
GCTCCGTGGAGAACGCGTTCGTCAGCACGGCGCTCCGACTCGCCGCCATG
AAGTCGATGAAGTCGATGAAGTCGTCGGCCTCCACCAAGACCGCCGCGGA
AGGACACGAGCCGGCGCCCTCGATCGCTGCGATCGGATCGCCCGCGGCAT
CGATCGACACCGCTTCCGAGTCCCCGTCGCTGCCGCCGCCGGCACCGGCC
GGGAGCACTCCTCTCTCGTCTCCCTCTCCCCCCAAGGACAGCGCCTCCTT
CTTGTATTCGTGGCCCGGCGGTGCCCAGGACACCGCGGCGTCCGGGCCCT
TTTTCGGCGTGGCGGAGGTGGTGGGTGCCTCCGACGTCAACGACGGCGTT
TACGACGGCGGAGAGGATCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTGGTAGACCGGAGGGGTTGTTGACGGGAGGACAAACGCCAAGTG
AGGAGACGACGGTGGTTTCTCACCACCTTGACAGCAACGGCAGCGAACGC
CGCCGCGACAGCGATGCTGGCCACGCCCGCAGCTGCAGCAGCCACAGCGG
GAGCAACATCGGCAGCGATGATGCCGGGTCGAGCCGATCGTGGGGGAGTG
GAGGAAGGACGGGCGGCGGCAGCAGACGAGGGTCGTCTTGCCTTTACCGC
CAAGAAGGAGGCGTCTGGATCGACGTTGACGGCACGCCAATGGGTGAGTC
GCGAGATCAAGAGCGAGCGCAGAGTAAGGGTCGGTCGTCCTTCGTCCAGC
TCGGGCACTGATTGTTCTGCTAGCGTTGTACTTACTAGCGAACAGGGATT
AGTTCGACCGTTGCTTTCTTGCCAATGCAGAGCCTGAGCTAGGAGAGATC
CACCCTCCTCGCGGTTCACTTCCCTTCACCCTACCCTGGGCCCCTTGCAA
GCGGCTCTGGAACACCCACCCGTCCGTGCTGTCGGCGTGTTTCTCGCCGT
CATCGTAGGATGCGCTGTGCGAGTCTCACTACAACCTCAGCTCTCAACTA
ACACACAAACAGGGGTGCCGTCGTTTGAAAACCCATTGAGTACGAAGCCA
CCACGAGACGCCGGGCCGGAAGCAAGCGCGGCTTTTCATTCTCGGGCTAC
ATATCACGCAAGGGCTTAGAGCGCCTCCCCCGAATATTAATCTCGCTGAC
CCCCTCGCTTAATATTCCCTTGCTATTCCTCCCCACCCCCCGGCTGCGCT
CATGCCCGCGACGACGCTCGCCACGTTCTCTATACTTCAGGTCGAATCCA
TCCGCCTCAAACCGGCCTCGGTGGCAGCCTCCACCCACACCACTCGCGCA
CCAAGGGGCTGCGCCCGATGAAGAAGTCCATCAGCGAGGCCGGCGGCCTG
GGCAGCTACCTGGAGGCTGCCTCCTCGGCGCGCGTGTCCGCCATCGCCGC
CGCTGAGGTGTCCCGCGGTGCTATTGTTGGCGCGCTGGGCAGCATCTGGG
GCTGCCTCGAGGTGCAGCCGTCGCCGCGGGCGCGGCAGCCGCCGCCGCCG
CCGCTCTCGCCGTCGTATTCGTACGTAAACCCGGAGCTGTGTGTGTGGGG
AGGGGTTTACTCGACGGAGTAAAAAACCGATCGAAAGCGTAGGGAGGATG
GATGGAATGGGGCGGTTATGTCTCTCCTCTCGCGCATCCCTTGGGTCTCT
CTCTTTCTCTTTCTGCCACGCCGGGTTGCGTTGTGTCCGATTTTCGGCCG
ACGGGAAATGGGTTGCCCACTATCTATATTGTATGTCCTCCGAAGGCTGC
TGTGGTGTAGGGGTTGTCTGCTCATCTTCACCCCCGTAAGTTAGTTTTAC
TGCGTAAAATAGTCATGCAACGCGTGCGACGCATCATCACCATGTATACA
AGTTGTGTGTGTTGGTTCGAAATTAATTGTGTTGGGTTGTGTTGTTGAAA
AAGTGTGTTTCGTGAAGCCATCAGAGGGGGTGTCATGTATATGTAGTACG
TAACGCGCACCCGACTCAGATCTTGCATATGGTCAATTGGCAATACTCCA
CGCTGTTGCTGCTAGGTATAGTATCGGCTCTGGTAGCGGCGGTATCACTG
AATCAATGGAGTTTTATTTAGTACGGAAAAGGGCGGAGTTTTACTGGTTT
TAATTAGAAAAAAATACATACGCCTGCCTGCGTATACGTTTTTTGTCAGG
GTTCGGCGCATATCCATTTGCCTTGAAGCAATAGCAACGAAAAAATTCGG
TCGAGTGAGAACGGTCTGCCACCCTTGGTATCGTTATCTGTAAACCCTTG
GCGCATCTCCGCGCGCAGGGGGGGGGGGTAAATGTTTCTCTGTGCCCCTT
GCTTCGTTTGTTGGGGTTCCATCTGTATCGCGTTGCCCAGCCAGCCCACA
TAGTTATTTCTTATTTCGCTTGTGAAGCTGTGGGTCGGTACCTTGGTCAA
CGCAGGCGGGGTAAAGTAGCCGTGTGGGTCGTCTGTATGCTCCTCTGGCG
GGGCAACAAATATGAATGTGATGCTCGTTTTTTTTTCTGTTCCCGTCACT
GATTCCCCCCTGTGATCTGCATCTATCTGGTTGCGAGAATCAAAGCGTGG
TTTGTCGCATGTGTATTCCGCCGCTCGCCCACCGCGGACGTGGAACGTGT
GGGTGAAGGCTCGGGCCAATGTGTCTACTTTTAGTGATCCACAATTGGAA
ATGGAGAGCGACAAAGCAAGAGAGAGAAAGAACGAGAAGGAAAGAGGGAG
AGAACCATAAACCTTGTTTTGTCTCGTCCGGTTGGGTTAGGTTTGTGAGT
ATCAAGGAGGGTCAGACGCCGCAAGGAGAAAAACAAAGTCTTG
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Coding sequence (CDS) from alignment at C-linearis_contig8:1503910..1507402-

>mRNA_C-linearis_contig8.15575.1 ID=mRNA_C-linearis_contig8.15575.1|Name=mRNA_C-linearis_contig8.15575.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at C-linearis_contig8:1503910..1507402- (Chordaria linearis ClinC8C monoicous)
ATGGCGGGATGCAGGATCATCAGCAGCGGCGACAGTGTCGGGAGCAGCGC
AACCTTGCTCGTCGGTGCACCTGAGCCCCTTGCCGCCAACGACAGGCAAC
AGCAGCAGCCGCCCGTGTCGCGCTCTGACTCTAACCAAGAGCTGTGGGGC
TACTGGTCTGGTGACCACCAAGACGGAAGATGTAGTTCTCGCTCCAGGGA
CAGCAGCGTGTCGACCGCTTCCTACGGCGACCATCAGACGGACGGCGGCG
CCTCCTCCGCCTTGCTGCTGCACGATCCGTGGTTTTCGCTCCAAGGCTAC
AGCACCGTCCCAATAGGCCAGGGGGGCGAAGAGGGGAGCAGCGTCGGCCT
CGTCGTCGACACGGACACTTGTGCTACGCCGCCGCAGCAAAGCGTTCGAT
GCCCGCTGAGCGACATCGCCCCTCAGAACCCGTCTCCTGCTTTCAAGGCC
GTCGACATGAACATCTGGCAACCTGTCGGCCCTCCCGGCGTTGGCACGCC
CAGCGGCGGCGGCGGTGGCGAGGGCAGCGGCTCGAAGCGGACACCAGAAG
AGTGCGCGTACCTCAGGCACGCCGGCATAGAGAACTTCGACTCGAACGCC
AGCTCCGTGGAGAACGCGTTCGTCAGCACGGCGCTCCGACTCGCCGCCAT
GAAGTCGATGAAGTCGATGAAGTCGTCGGCCTCCACCAAGACCGCCGCGG
AAGGACACGAGCCGGCGCCCTCGATCGCTGCGATCGGATCGCCCGCGGCA
TCGATCGACACCGCTTCCGAGTCCCCGTCGCTGCCGCCGCCGGCACCGGC
CGGGAGCACTCCTCTCTCGTCTCCCTCTCCCCCCAAGGACAGCGCCTCCT
TCTTGTATTCGTGGCCCGGCGGTGCCCAGGACACCGCGGCGTCCGGGCCC
TTTTTCGGCGTGGCGGAGGTGGTGGGTATGGCGGGATGCAGGATCATCAG
CAGCGGCGACAGTGTCGGGAGCAGCGCAACCTTGCTCGTCGGTGCACCTG
AGCCCCTTGCCGCCAACGACAGGCAACAGCAGCAGCCGCCCGTGTCGCGC
TCTGACTCTAACCAAGAGCTGTGGGGCTACTGGTCTGGTGACCACCAAGA
CGGAAGATGTAGTTCTCGCTCCAGGGACAGCAGCGTGTCGACCGCTTCCT
ACGGCGACCATCAGACGGACGGCGGCGCCTCCTCCGCCTTGCTGCTGCAC
GATCCGTGGTTTTCGCTCCAAGGCTACAGCACCGTCCCAATAGGCCAGGG
GGGCGAAGAGGGGAGCAGCGTCGGCCTCGTCGTCGACACGGACACTTGTG
CTACGCCGCCGCAGCAAAGCGTTCGATGCCCGCTGAGCGACATCGCCCCT
CAGAACCCGTCTCCTGCTTTCAAGGCCGTCGACATGAACATCTGGCAACC
TGTCGGCCCTCCCGGCGTTGGCACGCCCAGCGGCGGCGGCGGTGGCGAGG
GCAGCGGCTCGAAGCGGACACCAGAAGAGTGCGCGTACCTCAGGCACGCC
GGCATAGAGAACTTCGACTCGAACGCCAGCTCCGTGGAGAACGCGTTCGT
CAGCACGGCGCTCCGACTCGCCGCCATGAAGTCGATGAAGTCGATGAAGT
CGTCGGCCTCCACCAAGACCGCCGCGGAAGGACACGAGCCGGCGCCCTCG
ATCGCTGCGATCGGATCGCCCGCGGCATCGATCGACACCGCTTCCGAGTC
CCCGTCGCTGCCGCCGCCGGCACCGGCCGGGAGCACTCCTCTCTCGTCTC
CCTCTCCCCCCAAGGACAGCGCCTCCTTCTTGTATTCGTGGCCCGGCGGT
GCCCAGGACACCGCGGCGTCCGGGCCCTTTTTCGGCGTGGCGGAGGTGGT
GGGTCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGTAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTGGTAG
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