mRNA_C-linearis_contig8.15504.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15504.1
Unique NamemRNA_C-linearis_contig8.15504.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.070e-32
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 3
Query:   45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            M+AAE GPAAAV+K GK +  + +G Q HVI+HE RPD++RG VLL T+L+D K+PNR SNKQQ +V NTEE + S+AL M   +LKNKRERW++                   RR+AD EVAD  + ALRG GRTRSG   ++P E
Sbjct:    1 MSAAEAGPAAAVSKPGKCEHMLLLGNQTHVIQHEWRPDKSRGEVLLITTLVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKAH----GRSGGSRSSGGGARRNADREVADLFMAALRGCGRTRSGSTISEPAE 143          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.130e-31
Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 3
Query:   45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            M+AA  G AA V+K GK +R +++G   HV++HE R  +  G VLL T+L+D KNPNR SNK+Q +V+NTEESI S+AL M   +LKNKRE+W++ Q                 RR+AD EVADP++ ALRGGGRTRS V T QP E
Sbjct:    1 MSAAGAGLAAPVSKPGKCERILWLGKVRHVVRHEWRLHKGSGEVLLTTTLVDKKNPNRSSNKRQVYVENTEESITSKALEMARIVLKNKREKWEKAQGHSGGSSSGGGP-----RRNADREVADPVMAALRGGGRTRSRVVTIQPAE 142          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JHU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU5_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.470e-26
Identity = 54/92 (58.70%), Postives = 75/92 (81.52%), Query Frame = 3
Query:   45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRER 317
            M+AAE GPAAAV+K GK +R +++G ++HVI+H+ RP+ +RG VLL T+L+D K+PNR SN+QQ +VDNTEE + S+AL M  ++LKNKRER
Sbjct:    1 MSAAEAGPAAAVSKPGKCERMLWLGGRKHVIQHKWRPNNSRGEVLLITTLVDKKSPNRPSNQQQVFVDNTEEGVASKALEMAHTVLKNKRER 92          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JVZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ1_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.020e-24
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 3
Query:   45 MNAAEVGPAAA-----VTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            M++A+ GPAAA     VTK G  +R V  G  +HV+K   R    RGVL+  +L+D+K+ N  S     +V NTEE++  +A  + D +LK KRE+WQ+ QQ               V R+ADS V +P+IMALRG GRT S V T +P E
Sbjct:    1 MSSAKAGPAAAGLAAAVTKPGACERTVLFGKDKHVVKLSWRLVSERGVLVTATLVDSKHKNSSSQTYSGYVKNTEEAVSEKAKELTDKVLKTKREQWQKAQQRSGGGSSSGG-----VGRTADSAVTNPVIMALRGVGRTLSRVVTIEPAE 146          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5KGU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.540e-24
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 3
Query:   45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            M+ A  GPA AVTK GK  R VF+G   ++++H+ R D AR  V L+T  ++ K+PNR S+K+  +V+NTEE+  S AL M D +LK KR+ + R        XXXXXXXXXX     D E+ADP+I+ALRGGGRTRSGV T +PDE
Sbjct:    1 MSTAAPGPAPAVTKPGKCQRIVFIGSTRYLVEHKWRFDAARNKVRLETKFVNKKSPNRPSDKETRYVENTEEAASSEALEMADRVLKKKRDVFLREN----GGXXXXXXXXXXXXXXXDDELADPVIVALRGGGRTRSGVETGKPDE 143          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.480e-24
Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   42 IMNAAEVGPAAA-----VTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            IM++A+ G AAA     VTK G  +R V +G  +HV+K   R    RGVL+  +L+D+K+ NR S     +  ++EE++  +A  + D +LKNKRERWQ+ Q XXXXXXXXXX     VRR+ DS VADP+IMALRG GRTR  V T QP E
Sbjct:  157 IMSSAQAGRAAAGLAAAVTKPGVCERTVLLGKDKHVVKLSWRLVSERGVLVTATLVDSKHKNRSSQTYSGYAKDSEEAVSEKAEELTDKVLKNKRERWQKAQXXXXXXXXXXX-----VRRTEDSAVADPVIMALRGVGRTRPRVVTIQPTE 303          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5L9U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9U0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.280e-19
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  484 CTEI---DWRKQSAETFLASMDAMGAGNALAFLESKGLQVAKDIRREIRDLKAKAVVGVALERALGAAKKHNKTNEGSRTWQTLLTAAAFNRPANDDDE 771
            CT+    DWR+QS ETFLASMD+MG  NAL  LE  G + AK+ R  +R+L+AK    V+LERA+  A+K   T EGSRT+Q +LTAAAF  P +D DE
Sbjct:    2 CTQTAPADWRQQSTETFLASMDSMGYNNALHHLEGTGSKFAKETRVLLRELEAKVSAAVSLERAIEQAQKQRSTKEGSRTFQMILTAAAF--PVDDVDE 98          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.870e-18
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  171 VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
            +L+  +L+D K+  R S     +  NTEE++  +A  + D +LKNKRE+WQ+ QQ   XXXXX       VRR+ADS VADP+IMALR GGRTRS V T QP E
Sbjct:    1 MLVTATLVDAKHKKRSSQTYSGYAKNTEEAVSEKAKELTDKVLKNKREQWQKAQQRSGXXXXXGG-----VRRTADSAVADPVIMALRSGGRTRSRVVTIQPAE 99          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.710e-17
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  493 IDWRKQSAETFLASMDAMGAGNALAFLESKGLQVAKDIRREIRDLKAKAVVGVALERALGAAKKHNKTNEGSRTWQTLLTAAAF 744
            +DWR+QS ETFLASMD++G  NAL  LE  G   AKD  + +R L+ K     +LERA+G  +K  +T EGSRT QT+L AAAF
Sbjct:   25 VDWRQQSTETFLASMDSIGYDNALKHLEKIGSTFAKDTHKRLRGLEDKVSTAASLERAIGQTRKQRRTKEGSRTLQTILNAAAF 108          
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JKY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.970e-17
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 3
Query:   45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQ 332
            M+AA  GPAA V+K GK +  ++     H+++HE R     G VLL T+L+D KNPNR SNK Q +V+NTE S+ S AL M   +LKNKRE+ ++ Q
Sbjct:    1 MSAAGAGPAAPVSKPGKCEGILWPLKVRHIVRHEWRLHTGSGEVLLTTTLVDKKNPNRSSNKHQVYVENTEASVTSNALEMAHIVLKNKREKLEKAQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHT7_9PHAE1.070e-3252.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEY9_9PHAE2.130e-3151.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHU5_9PHAE8.470e-2658.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ1_9PHAE3.020e-2442.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGU5_9PHAE3.540e-2451.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K847_9PHAE6.480e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9U0_9PHAE1.280e-1954.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQY8_ECTSI9.870e-1850.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA27_9PHAE1.710e-1753.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKY5_9PHAE1.970e-1748.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:829396..830440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size779
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15504.1prot_C-linearis_contig8.15504.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 829618..830396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.419163-UTR-C-linearis_contig8:829395..8296171622930517.419163-UTR-C-linearis_contig8:829395..829617Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 829396..829617 -
1690881110.1927109-UTR-C-linearis_contig8:829395..8296171690881110.1927109-UTR-C-linearis_contig8:829395..829617Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 829396..829617 -
1622930517.4643476-UTR-C-linearis_contig8:830396..8304401622930517.4643476-UTR-C-linearis_contig8:830396..830440Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 830397..830440 -
1690881110.2264254-UTR-C-linearis_contig8:830396..8304401690881110.2264254-UTR-C-linearis_contig8:830396..830440Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 830397..830440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.4366581-CDS-C-linearis_contig8:829617..8296881622930517.4366581-CDS-C-linearis_contig8:829617..829688Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 829618..829688 -
1690881110.2048903-CDS-C-linearis_contig8:829617..8296881690881110.2048903-CDS-C-linearis_contig8:829617..829688Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 829618..829688 -
1622930517.4500952-CDS-C-linearis_contig8:829954..8303961622930517.4500952-CDS-C-linearis_contig8:829954..830396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 829955..830396 -
1690881110.215241-CDS-C-linearis_contig8:829954..8303961690881110.215241-CDS-C-linearis_contig8:829954..830396Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 829955..830396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15504.1

>prot_C-linearis_contig8.15504.1 ID=prot_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp
MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLM
DTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQSSG
GGGGSSSSSSSSVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDEVHGD
RLEKAVCGDIPRFDGCDGSG*
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mRNA from alignment at C-linearis_contig8:829396..830440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15504.1 ID=mRNA_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at C-linearis_contig8:829396..830440- (Chordaria linearis ClinC8C monoicous)
CTAAAAGTTGCTCAGATCAAAACTGAGTTGAGCACAGGCCGATCATGAAT GCAGCTGAAGTTGGGCCAGCGGCAGCCGTGACAAAATCTGGAAAGGTTGA TCGCAGAGTCTTTGTAGGGCCGCAAGAACACGTCATCAAGCACGAACGGA GACCAGACGAAGCTCGCGGCGTGCTGTTGAAGACGAGTCTCATGGATACT AAGAATCCCAACCGGGTCTCGAACAAGCAGCAGGCTTGGGTTGACAACAC AGAAGAAAGTATTTGCTCAAGAGCCTTGATGATGGTTGACAGCATCCTGA AGAACAAGCGGGAAAGATGGCAGCGAGTACAGCAGTCTAGCGGCGGCGGC GGCGGCAGCAGCAGCAGCAGCAGCAGTAGCGTTCGGAGGTCAGCAGATTC AGAGGTGGCCGACCCGATCATCATGGCTTTGAGAGGTGGTGGGAGGACTC GATCTGGGGTGCCGACGACACAACCAGATGAGGTGCGCGAGAGAAAATAA TAAAGCCGAAATTTACAATCAACAATCACACGCCTAATAACTGCTGTGCC GAGCCTTCGAAAATTATGCCGAGAATTGGAGATGGCACCAAGAGATGCGA GTAGCCCGTTGATTCAACGCCCGAAGGGTAGAGGGAGTATGTTTTGCACA ACGGGGGATGCAACGTGTGAAAAATCTACGAACTCTCTCTGTCTTTTATC CTTTGAATTGCTGATCACACTTGTCTACCGCACGTCTTGCAATGTACAAC AGACGGAGATCGACTGGAGAAAGCAGTCTGCGGAGACATTCCTCGCTTCG ATGGATGCGATGGGAGCGGGTAACGCGCTAGCTTTTTTGGAATCCAAGGG CTTGCAGGTTGCCAAGGATATTCGTCGAGAGATCCGAGACTTGAAAGCCA AAGCAGTTGTGGGCGTCGCGCTTGAGAGAGCTTTGGGGGCGGCGAAGAAG CACAACAAGACCAACGAGGGAAGCCGCACGTGGCAAACGCTCCTGACCGC GGCGGCCTTCAATCGGCCGGCCAACGACGATGACGAAGAGGAGGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:829396..830440-

>mRNA_C-linearis_contig8.15504.1 ID=mRNA_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig8:829396..830440- (Chordaria linearis ClinC8C monoicous)
ATGAATGCAGCTGAAGTTGGGCCAGCGGCAGCCGTGACAAAATCTGGAAA
GGTTGATCGCAGAGTCTTTGTAGGGCCGCAAGAACACGTCATCAAGCACG
AACGGAGACCAGACGAAGCTCGCGGCGTGCTGTTGAAGACGAGTCTCATG
GATACTAAGAATCCCAACCGGGTCTCGAACAAGCAGCAGGCTTGGGTTGA
CAACACAGAAGAAAGTATTTGCTCAAGAGCCTTGATGATGGTTGACAGCA
TCCTGAAGAACAAGCGGGAAAGATGGCAGCGAGTACAGCAGTCTAGCGGC
GGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGTAGCGTTCGGAGGTCAGC
AGATTCAGAGGTGGCCGACCCGATCATCATGGCTTTGAGAGGTGGTGGGA
GGACTCGATCTGGGGTGCCGACGACACAACCAGATGAGGTGCATGAATGC
AGCTGAAGTTGGGCCAGCGGCAGCCGTGACAAAATCTGGAAAGGTTGATC
GCAGAGTCTTTGTAGGGCCGCAAGAACACGTCATCAAGCACGAACGGAGA
CCAGACGAAGCTCGCGGCGTGCTGTTGAAGACGAGTCTCATGGATACTAA
GAATCCCAACCGGGTCTCGAACAAGCAGCAGGCTTGGGTTGACAACACAG
AAGAAAGTATTTGCTCAAGAGCCTTGATGATGGTTGACAGCATCCTGAAG
AACAAGCGGGAAAGATGGCAGCGAGTACAGCAGTCTAGCGGCGGCGGCGG
CGGCAGCAGCAGCAGCAGCAGCAGTAGCGTTCGGAGGTCAGCAGATTCAG
AGGTGGCCGACCCGATCATCATGGCTTTGAGAGGTGGTGGGAGGACTCGA
TCTGGGGTGCCGACGACACAACCAGATGAGGTGCACGGAGATCGACTGGA
GAAAGCAGTCTGCGGAGACATTCCTCGCTTCGATGGATGCGATGGGAGCG
GGTAAACGGAGATCGACTGGAGAAAGCAGTCTGCGGAGACATTCCTCGCT
TCGATGGATGCGATGGGAGCGGGTAA
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