mRNA_C-linearis_contig8.15504.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.070e-32 Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 3
Query: 45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
M+AAE GPAAAV+K GK + + +G Q HVI+HE RPD++RG VLL T+L+D K+PNR SNKQQ +V NTEE + S+AL M +LKNKRERW++ RR+AD EVAD + ALRG GRTRSG ++P E
Sbjct: 1 MSAAEAGPAAAVSKPGKCEHMLLLGNQTHVIQHEWRPDKSRGEVLLITTLVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKAH----GRSGGSRSSGGGARRNADREVADLFMAALRGCGRTRSGSTISEPAE 143
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.130e-31 Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 3
Query: 45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
M+AA G AA V+K GK +R +++G HV++HE R + G VLL T+L+D KNPNR SNK+Q +V+NTEESI S+AL M +LKNKRE+W++ Q RR+AD EVADP++ ALRGGGRTRS V T QP E
Sbjct: 1 MSAAGAGLAAPVSKPGKCERILWLGKVRHVVRHEWRLHKGSGEVLLTTTLVDKKNPNRSSNKRQVYVENTEESITSKALEMARIVLKNKREKWEKAQGHSGGSSSGGGP-----RRNADREVADPVMAALRGGGRTRSRVVTIQPAE 142
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JHU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU5_9PHAE) HSP 1 Score: 106 bits (265), Expect = 8.470e-26 Identity = 54/92 (58.70%), Postives = 75/92 (81.52%), Query Frame = 3
Query: 45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRER 317
M+AAE GPAAAV+K GK +R +++G ++HVI+H+ RP+ +RG VLL T+L+D K+PNR SN+QQ +VDNTEE + S+AL M ++LKNKRER
Sbjct: 1 MSAAEAGPAAAVSKPGKCERMLWLGGRKHVIQHKWRPNNSRGEVLLITTLVDKKSPNRPSNQQQVFVDNTEEGVASKALEMAHTVLKNKRER 92
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JVZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ1_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.020e-24 Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 3
Query: 45 MNAAEVGPAAA-----VTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
M++A+ GPAAA VTK G +R V G +HV+K R RGVL+ +L+D+K+ N S +V NTEE++ +A + D +LK KRE+WQ+ QQ V R+ADS V +P+IMALRG GRT S V T +P E
Sbjct: 1 MSSAKAGPAAAGLAAAVTKPGACERTVLFGKDKHVVKLSWRLVSERGVLVTATLVDSKHKNSSSQTYSGYVKNTEEAVSEKAKELTDKVLKTKREQWQKAQQRSGGGSSSGG-----VGRTADSAVTNPVIMALRGVGRTLSRVVTIEPAE 146
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5KGU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.540e-24 Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 3
Query: 45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
M+ A GPA AVTK GK R VF+G ++++H+ R D AR V L+T ++ K+PNR S+K+ +V+NTEE+ S AL M D +LK KR+ + R XXXXXXXXXX D E+ADP+I+ALRGGGRTRSGV T +PDE
Sbjct: 1 MSTAAPGPAPAVTKPGKCQRIVFIGSTRYLVEHKWRFDAARNKVRLETKFVNKKSPNRPSDKETRYVENTEEAASSEALEMADRVLKKKRDVFLREN----GGXXXXXXXXXXXXXXXDDELADPVIVALRGGGRTRSGVETGKPDE 143
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.480e-24 Identity = 76/152 (50.00%), Postives = 99/152 (65.13%), Query Frame = 3
Query: 42 IMNAAEVGPAAA-----VTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
IM++A+ G AAA VTK G +R V +G +HV+K R RGVL+ +L+D+K+ NR S + ++EE++ +A + D +LKNKRERWQ+ Q XXXXXXXXXX VRR+ DS VADP+IMALRG GRTR V T QP E
Sbjct: 157 IMSSAQAGRAAAGLAAAVTKPGVCERTVLLGKDKHVVKLSWRLVSERGVLVTATLVDSKHKNRSSQTYSGYAKDSEEAVSEKAEELTDKVLKNKRERWQKAQXXXXXXXXXXX-----VRRTEDSAVADPVIMALRGVGRTRPRVVTIQPTE 303
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5L9U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9U0_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.280e-19 Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 484 CTEI---DWRKQSAETFLASMDAMGAGNALAFLESKGLQVAKDIRREIRDLKAKAVVGVALERALGAAKKHNKTNEGSRTWQTLLTAAAFNRPANDDDE 771
CT+ DWR+QS ETFLASMD+MG NAL LE G + AK+ R +R+L+AK V+LERA+ A+K T EGSRT+Q +LTAAAF P +D DE
Sbjct: 2 CTQTAPADWRQQSTETFLASMDSMGYNNALHHLEGTGSKFAKETRVLLRELEAKVSAAVSLERAIEQAQKQRSTKEGSRTFQMILTAAAF--PVDDVDE 98
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 9.870e-18 Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 3
Query: 171 VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQQXXXXXXXXXXXXXXXVRRSADSEVADPIIMALRGGGRTRSGVPTTQPDE 482
+L+ +L+D K+ R S + NTEE++ +A + D +LKNKRE+WQ+ QQ XXXXX VRR+ADS VADP+IMALR GGRTRS V T QP E
Sbjct: 1 MLVTATLVDAKHKKRSSQTYSGYAKNTEEAVSEKAKELTDKVLKNKREQWQKAQQRSGXXXXXGG-----VRRTADSAVADPVIMALRSGGRTRSRVVTIQPAE 99
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.710e-17 Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 493 IDWRKQSAETFLASMDAMGAGNALAFLESKGLQVAKDIRREIRDLKAKAVVGVALERALGAAKKHNKTNEGSRTWQTLLTAAAF 744
+DWR+QS ETFLASMD++G NAL LE G AKD + +R L+ K +LERA+G +K +T EGSRT QT+L AAAF
Sbjct: 25 VDWRQQSTETFLASMDSIGYDNALKHLEKIGSTFAKDTHKRLRGLEDKVSTAASLERAIGQTRKQRRTKEGSRTLQTILNAAAF 108
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Match: A0A6H5JKY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.970e-17 Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 3
Query: 45 MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARG-VLLKTSLMDTKNPNRVSNKQQAWVDNTEESICSRALMMVDSILKNKRERWQRVQ 332
M+AA GPAA V+K GK + ++ H+++HE R G VLL T+L+D KNPNR SNK Q +V+NTE S+ S AL M +LKNKRE+ ++ Q
Sbjct: 1 MSAAGAGPAAPVSKPGKCEGILWPLKVRHIVRHEWRLHTGSGEVLLTTTLVDKKNPNRSSNKHQVYVENTEASVTSNALEMAHIVLKNKREKLEKAQ 97 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15504.1 >prot_C-linearis_contig8.15504.1 ID=prot_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp MNAAEVGPAAAVTKSGKVDRRVFVGPQEHVIKHERRPDEARGVLLKTSLMback to top mRNA from alignment at C-linearis_contig8:829396..830440- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15504.1 ID=mRNA_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at C-linearis_contig8:829396..830440- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:829396..830440- >mRNA_C-linearis_contig8.15504.1 ID=mRNA_C-linearis_contig8.15504.1|Name=mRNA_C-linearis_contig8.15504.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig8:829396..830440- (Chordaria linearis ClinC8C monoicous)back to top |