mRNA_C-linearis_contig8.15513.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15513.1
Unique NamemRNA_C-linearis_contig8.15513.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:930124..930516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.3888528-UTR-C-linearis_contig8:930123..9301291622930504.3888528-UTR-C-linearis_contig8:930123..930129Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 930124..930129 +
1690881103.5540326-UTR-C-linearis_contig8:930123..9301291690881103.5540326-UTR-C-linearis_contig8:930123..930129Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 930124..930129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930504.406708-CDS-C-linearis_contig8:930129..9305161622930504.406708-CDS-C-linearis_contig8:930129..930516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 930130..930516 +
1690881103.571513-CDS-C-linearis_contig8:930129..9305161690881103.571513-CDS-C-linearis_contig8:930129..930516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 930130..930516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15513.1prot_C-linearis_contig8.15513.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 930130..930516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15513.1

>prot_C-linearis_contig8.15513.1 ID=prot_C-linearis_contig8.15513.1|Name=mRNA_C-linearis_contig8.15513.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=129bp
MGRAYFTVGLPSHSHPVPNPYGIPVPFVPMQALGNQEESSGGVGTTHRGG
GDIPPNSSHRSAAVGMAGGGGYSGGGYPRGETATLGGGVGGIGFSGGGAG
FDRDGAAETTEELMFDGGGGISGSIPSRM
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mRNA from alignment at C-linearis_contig8:930124..930516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15513.1 ID=mRNA_C-linearis_contig8.15513.1|Name=mRNA_C-linearis_contig8.15513.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at C-linearis_contig8:930124..930516+ (Chordaria linearis ClinC8C monoicous)
GGTGGGATGGGGCGCGCCTATTTCACTGTGGGATTGCCGTCCCATTCCCA
TCCCGTCCCAAACCCATATGGGATTCCCGTCCCATTCGTCCCCATGCAAG
CCCTTGGAAATCAAGAGGAGTCCAGCGGCGGCGTAGGGACAACGCACAGG
GGGGGGGGTGACATTCCCCCGAACAGCAGCCACAGGTCCGCAGCGGTGGG
CATGGCAGGTGGAGGTGGCTACTCTGGGGGGGGTTACCCCCGAGGTGAGA
CAGCAACGCTCGGTGGTGGTGTCGGTGGTATCGGATTCAGTGGCGGAGGT
GCTGGGTTTGACCGTGACGGTGCCGCAGAAACGACGGAAGAGTTGATGTT
TGATGGAGGCGGCGGAATTTCGGGTTCTATACCGTCACGCATG
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Coding sequence (CDS) from alignment at C-linearis_contig8:930124..930516+

>mRNA_C-linearis_contig8.15513.1 ID=mRNA_C-linearis_contig8.15513.1|Name=mRNA_C-linearis_contig8.15513.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at C-linearis_contig8:930124..930516+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCGCGCCTATTTCACTGTGGGATTGCCGTCCCATTCCCATCCCGT
CCCAAACCCATATGGGATTCCCGTCCCATTCGTCCCCATGCAAGCCCTTG
GAAATCAAGAGGAGTCCAGCGGCGGCGTAGGGACAACGCACAGGGGGGGG
GGTGACATTCCCCCGAACAGCAGCCACAGGTCCGCAGCGGTGGGCATGGC
AGGTGGAGGTGGCTACTCTGGGGGGGGTTACCCCCGAGGTGAGACAGCAA
CGCTCGGTGGTGGTGTCGGTGGTATCGGATTCAGTGGCGGAGGTGCTGGG
TTTGACCGTGACGGTGCCGCAGAAACGACGGAAGAGTTGATGTTTGATGG
AGGCGGCGGAATTTCGGGTTCTATACCGTCACGCATGATGGGGCGCGCCT
ATTTCACTGTGGGATTGCCGTCCCATTCCCATCCCGTCCCAAACCCATAT
GGGATTCCCGTCCCATTCGTCCCCATGCAAGCCCTTGGAAATCAAGAGGA
GTCCAGCGGCGGCGTAGGGACAACGCACAGGGGGGGGGGTGACATTCCCC
CGAACAGCAGCCACAGGTCCGCAGCGGTGGGCATGGCAGGTGGAGGTGGC
TACTCTGGGGGGGGTTACCCCCGAGGTGAGACAGCAACGCTCGGTGGTGG
TGTCGGTGGTATCGGATTCAGTGGCGGAGGTGCTGGGTTTGACCGTGACG
GTGCCGCAGAAACGACGGAAGAGTTGATGTTTGATGGAGGCGGCGGAATT
TCGGGTTCTATACCGTCACGCATG
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