mRNA_C-linearis_contig8.15709.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15709.1
Unique NamemRNA_C-linearis_contig8.15709.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2776059..2778912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1138
Cds size1137
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15709.1prot_C-linearis_contig8.15709.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2776060..2778912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.730098-CDS-C-linearis_contig8:2776059..27762621622930502.730098-CDS-C-linearis_contig8:2776059..2776262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2776060..2776262 -
1690881102.8865998-CDS-C-linearis_contig8:2776059..27762621690881102.8865998-CDS-C-linearis_contig8:2776059..2776262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2776060..2776262 -
1622930502.749884-CDS-C-linearis_contig8:2776486..27766921622930502.749884-CDS-C-linearis_contig8:2776486..2776692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2776487..2776692 -
1690881102.8976896-CDS-C-linearis_contig8:2776486..27766921690881102.8976896-CDS-C-linearis_contig8:2776486..2776692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2776487..2776692 -
1622930502.7684-CDS-C-linearis_contig8:2777363..27775291622930502.7684-CDS-C-linearis_contig8:2777363..2777529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2777364..2777529 -
1690881102.9102807-CDS-C-linearis_contig8:2777363..27775291690881102.9102807-CDS-C-linearis_contig8:2777363..2777529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2777364..2777529 -
1622930502.7841153-CDS-C-linearis_contig8:2777878..27780921622930502.7841153-CDS-C-linearis_contig8:2777878..2778092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2777879..2778092 -
1690881102.923142-CDS-C-linearis_contig8:2777878..27780921690881102.923142-CDS-C-linearis_contig8:2777878..2778092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2777879..2778092 -
1622930502.7996461-CDS-C-linearis_contig8:2778564..27789121622930502.7996461-CDS-C-linearis_contig8:2778564..2778912Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2778565..2778912 -
1690881102.9336927-CDS-C-linearis_contig8:2778564..27789121690881102.9336927-CDS-C-linearis_contig8:2778564..2778912Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2778565..2778912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15709.1

>prot_C-linearis_contig8.15709.1 ID=prot_C-linearis_contig8.15709.1|Name=mRNA_C-linearis_contig8.15709.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=379bp
VHVFFGVPCGENGELDTVVLCGTDHHSMMRFSFVANAIIRSQIVASALAG
NALTKGQVDDLWAMSTTGSLSPDEWREFFAVLLEELGPELLAKFEAYVTK
HDGDMDRAYQSLIGYKGWLVAKEVMPSIKAKKGGEWETALRESREEVARL
GAAPRTRGNAEAVGKAALDVDEISVKLEEQYRRWNFSVGAMQFGNALKYE
EYLAAKKIVGDKTVSPREVAEASAAVARLEQEKAETMAANGTTGKISGPN
SWAAQTAGKTVAGAAEEEAAAREALSSAKTRARKATAGEALEAATAEHAA
VVEARGRQGDGGKISGPNSWTAQTAGRTVAGAAEEEAAAREAWSAAKTRA
TKATAGEALEAATAEHAAVVEARGRQGDG
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mRNA from alignment at C-linearis_contig8:2776059..2778912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15709.1 ID=mRNA_C-linearis_contig8.15709.1|Name=mRNA_C-linearis_contig8.15709.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2854bp|location=Sequence derived from alignment at C-linearis_contig8:2776059..2778912- (Chordaria linearis ClinC8C monoicous)
GTGCACGTCTTCTTCGGAGTGCCGTGTGGCGAGAACGGCGAGCTGGACAC
CGTGGTGCTTTGCGGGACGGACCACCACTCCATGATGCGGTTCAGCTTCG
TCGCCAACGCCATCATCAGGTCGCAGATCGTCGCCTCGGCGTTGGCGGGG
AACGCCCTCACCAAGGGGCAGGTGGACGACCTCTGGGCGATGTCCACGAC
GGGTTCGTTGAGCCCCGACGAGTGGCGTGAGTTCTTCGCCGTCCTTCTGG
AGGAGCTCGGGCCGGAGCTGCTCGCTAAGTTCGAGGCCTACGTGACGAAG
CACGACGGCGACATGGACCGGGCGTACCAGAGCCTGATCGGCTACAAGGT
TTGTGGTGTGCATGACGCAGAGTTTGATCGTTCAAAAACCTTCGCGAGAC
CGAAGCAGGCTCGTGTGTATATGCCGAGTCGACATATGTGTTTTGCAGGT
TCGGGAGGAAGGCGTGCACTCCCAGGGCCTTGTCCTTTTTGGCGTATAAT
AGGTCAGTTGCGGTAATCGTCCGTCGTGCTTGTTCAGGTTGTTGTACACG
CGAGCGTAGCGCAGGTTATTTCACAAACAAATACGTCACATACGGCAGCT
CAACTTTTGTTTTTATGTGCCGCCTGAGTGGTGAAAAAAAACATAAAACG
ATTGAACCCTAACGAACAAGTGAAAGGCACGATAAGAATGGCTCACCGAG
TCTTTGCCATCTGTCCTTATCGCCCCACCTCATCTCCAAGATCAAACAAC
TGACAATTCCTTGTTTAACGCCCCTCCCCGCCTCGAATGGTGTGGTGGTT
GTTCCAACCCCCCCAATCAGGGATGGCTGGTGGCAAAGGAGGTGATGCCC
TCCATCAAAGCAAAGAAGGGCGGGGAGTGGGAGACGGCGCTTCGCGAGAG
CCGCGAGGAAGTGGCGAGGCTAGGGGCGGCGCCTCGGACGCGGGGCAACG
CCGAGGCCGTGGGCAAGGCGGCGTTGGACGTAGACGAGATCTCCGTCAAG
CTCGAGGAGCAGTACCGTCGCTGGAATTTTTCCGGTGGGTGTGCCATTCG
TCGTACACATGTTTGTTCCAAGCGGCTGGACAGATAGGTCAGCGAGGTGT
TGTTGTTGTTGACAGGGCGCCGCCACCCCACACCTCGAGCCTTCCTGTAT
TCTTCACGTACTCGCTCCCATAGAGAGCGGGGCGTCTACGCTTTGACAGC
AGCAATTGCGTCGGTTTCCGGGCAACTTTGCAGGGGGGGGAATACCCATC
CTCGTCTGCAAGCGCTTTGCGGGTCTTGACCGCGAACAACCTCATGGCCC
GCCTTGGTGCTATATCTCTCCTCATCCAATCATCAATGCACACTTTCACT
TTCCCTGTCTCCTCGCTTCGTCCACTGGTGTAGTCGGCGCCATGCAGTTT
GGCAATGCCCTCAAGTACGAGGAATACTTGGCGGCCAAGAAGATCGTGGG
CGACAAGACGGTCTCTCCACGCGAGGTGGCCGAGGCGAGCGCTGCGGTGG
CGCGTCTCGAGCAGGAGAAGGCGGAGACCATGGCGGCCAACGGTACGACT
ATCTTTCCTGTAAATTCCCGCTGATGGTGGTCTTGGTATTTTGGTGTTGA
TGTTGGTGTGGAGGTGGATTCGTTCTCGCTCACTGTCGTTGGTGGTGGTG
GTGCCGTTGGTGCTGCTGCCGCTATGTGCTTTGCACCTACCCCGAACATT
TGACTCTTTCGTCTCATCTCCTCCCGCCCTTCCCTCCTGCTATTTTTGTT
GTGTCGCCACCGCTGTCGCCGCTGGCAATGCCGATGCCGCTCGCGCTGCT
TGGAGAAGCGGAAGGGAGGTGGGCCGTCGTCTTTCGTTGGTGTTTGCTGT
TGCTGCTCTCGGTGCCTGCTCGTGGTGGTGATGGCCGATTTCTATTTTGG
TTGTTCTGTTGTGGTTGTCGTCGTGTCGGGGTTGCATGTGACGATGTTGT
CGTTGGTCTTGCAGGTTTAGCTCTTTGTCGTTTTTGTTGTTGGTGGTGGC
GGCGGCGGCGACGGACTGGACGTTGTCTTGAATGTCTGTGTGTTGATCCA
GGTTTTCAGTACCCACGTGTTAGTGCATCCAACGATGTCTTCTTGTGCCC
ACGGCACCACTGTTTTTATCAATACGAGCAACGGATCGTTGTGCAAACGT
CGTTTGGTGGTGTTGCCCTCCTAACTCTCGTCAATTACTCTGGTACCACG
CGCCGTTTGTGCACGATCTCAGGCAAGATCTCAGGACCGAATTCCTGGGC
GGCCCAGACAGCGGGGAAGACCGTCGCCGGAGCCGCGGAGGAGGAGGCGG
CCGCGAGGGAAGCCTTGTCTTCCGCGAAGACCCGGGCGAGGAAGGCGACG
GCAGGGGAGGCCCTTGAGGCGGCGACGGCGGAGCATGCGGCGGTGGTCGA
AGCCAGAGGGCGCCAGGGCGATGGCGGTGAGTTTATTCGTTCCGATCTCG
CTGGACGTTGTCTTGAATGTCTGTGTTTTGATACAGGTTTTCAGTACCCA
CGTGTTTGTGCATCCAACGATGTCGTCTTGTGGCCCACTGTTTTTATCAA
TACGAGCAACGGATCGTTGTGCAAACGTCGTTTGGTGGTGTTGCCCTCCT
AACTCTCGTTAATTGCTCGTGTACCACGCGCCGTTTGTGCACGATCTCAG
GCAAGATCTCAGGACCGAATTCCTGGACGGCCCAGACAGCGGGAAGGACC
GTCGCCGGAGCCGCGGAGGAGGAGGCGGCCGCGAGGGAAGCCTGGTCCGC
CGCGAAGACCCGGGCGACAAAGGCGACGGCGGGAGAGGCCCTCGAGGCGG
CGACGGCAGAGCATGCGGCGGTGGTCGAAGCCAGAGGGCGCCAGGGCGAT
GGCG
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Coding sequence (CDS) from alignment at C-linearis_contig8:2776059..2778912-

>mRNA_C-linearis_contig8.15709.1 ID=mRNA_C-linearis_contig8.15709.1|Name=mRNA_C-linearis_contig8.15709.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at C-linearis_contig8:2776059..2778912- (Chordaria linearis ClinC8C monoicous)
GTGCACGTCTTCTTCGGAGTGCCGTGTGGCGAGAACGGCGAGCTGGACAC
CGTGGTGCTTTGCGGGACGGACCACCACTCCATGATGCGGTTCAGCTTCG
TCGCCAACGCCATCATCAGGTCGCAGATCGTCGCCTCGGCGTTGGCGGGG
AACGCCCTCACCAAGGGGCAGGTGGACGACCTCTGGGCGATGTCCACGAC
GGGTTCGTTGAGCCCCGACGAGTGGCGTGAGTTCTTCGCCGTCCTTCTGG
AGGAGCTCGGGCCGGAGCTGCTCGCTAAGTTCGAGGCCTACGTGACGAAG
CACGACGGCGACATGGACCGGGCGTACCAGAGCCTGATCGGCTACAAGGT
GCACGTCTTCTTCGGAGTGCCGTGTGGCGAGAACGGCGAGCTGGACACCG
TGGTGCTTTGCGGGACGGACCACCACTCCATGATGCGGTTCAGCTTCGTC
GCCAACGCCATCATCAGGTCGCAGATCGTCGCCTCGGCGTTGGCGGGGAA
CGCCCTCACCAAGGGGCAGGTGGACGACCTCTGGGCGATGTCCACGACGG
GTTCGTTGAGCCCCGACGAGTGGCGTGAGTTCTTCGCCGTCCTTCTGGAG
GAGCTCGGGCCGGAGCTGCTCGCTAAGTTCGAGGCCTACGTGACGAAGCA
CGACGGCGACATGGACCGGGCGTACCAGAGCCTGATCGGCTACAAGGGAT
GGCTGGTGGCAAAGGAGGTGATGCCCTCCATCAAAGCAAAGAAGGGCGGG
GAGTGGGAGACGGCGCTTCGCGAGAGCCGCGAGGAAGTGGCGAGGCTAGG
GGCGGCGCCTCGGACGCGGGGCAACGCCGAGGCCGTGGGCAAGGCGGCGT
TGGACGTAGACGAGATCTCCGTCAAGCTCGAGGAGCAGTACCGTCGCTGG
AATTTTTCCGGGATGGCTGGTGGCAAAGGAGGTGATGCCCTCCATCAAAG
CAAAGAAGGGCGGGGAGTGGGAGACGGCGCTTCGCGAGAGCCGCGAGGAA
GTGGCGAGGCTAGGGGCGGCGCCTCGGACGCGGGGCAACGCCGAGGCCGT
GGGCAAGGCGGCGTTGGACGTAGACGAGATCTCCGTCAAGCTCGAGGAGC
AGTACCGTCGCTGGAATTTTTCCGTCGGCGCCATGCAGTTTGGCAATGCC
CTCAAGTACGAGGAATACTTGGCGGCCAAGAAGATCGTGGGCGACAAGAC
GGTCTCTCCACGCGAGGTGGCCGAGGCGAGCGCTGCGGTGGCGCGTCTCG
AGCAGGAGAAGGCGGAGACCATGGCGGCCAACGGTACGACTCGGCGCCAT
GCAGTTTGGCAATGCCCTCAAGTACGAGGAATACTTGGCGGCCAAGAAGA
TCGTGGGCGACAAGACGGTCTCTCCACGCGAGGTGGCCGAGGCGAGCGCT
GCGGTGGCGCGTCTCGAGCAGGAGAAGGCGGAGACCATGGCGGCCAACGG
TACGACAGGCAAGATCTCAGGACCGAATTCCTGGGCGGCCCAGACAGCGG
GGAAGACCGTCGCCGGAGCCGCGGAGGAGGAGGCGGCCGCGAGGGAAGCC
TTGTCTTCCGCGAAGACCCGGGCGAGGAAGGCGACGGCAGGGGAGGCCCT
TGAGGCGGCGACGGCGGAGCATGCGGCGGTGGTCGAAGCCAGAGGGCGCC
AGGGCGATGGCGAGGCAAGATCTCAGGACCGAATTCCTGGGCGGCCCAGA
CAGCGGGGAAGACCGTCGCCGGAGCCGCGGAGGAGGAGGCGGCCGCGAGG
GAAGCCTTGTCTTCCGCGAAGACCCGGGCGAGGAAGGCGACGGCAGGGGA
GGCCCTTGAGGCGGCGACGGCGGAGCATGCGGCGGTGGTCGAAGCCAGAG
GGCGCCAGGGCGATGGCGGCAAGATCTCAGGACCGAATTCCTGGACGGCC
CAGACAGCGGGAAGGACCGTCGCCGGAGCCGCGGAGGAGGAGGCGGCCGC
GAGGGAAGCCTGGTCCGCCGCGAAGACCCGGGCGACAAAGGCGACGGCGG
GAGAGGCCCTCGAGGCGGCGACGGCAGAGCATGCGGCGGTGGTCGAAGCC
AGAGGGCGCCAGGGCGATGGCGCAAGATCTCAGGACCGAATTCCTGGACG
GCCCAGACAGCGGGAAGGACCGTCGCCGGAGCCGCGGAGGAGGAGGCGGC
CGCGAGGGAAGCCTGGTCCGCCGCGAAGACCCGGGCGACAAAGGCGACGG
CGGGAGAGGCCCTCGAGGCGGCGACGGCAGAGCATGCGGCGGTGGTCGAA
GCCAGAGGGCGCCAGGGCGATGGC
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