mRNA_C-linearis_contig8.15663.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15663.1
Unique NamemRNA_C-linearis_contig8.15663.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5LI23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI23_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 7.450e-21
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:    1 ANLAKETHRQDSKVWLMKGQVCWFVVRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAA 327
            A+  K   + + + W   GQ   +++RG TF+P+ M   + DNI R +AH +  +H LL++  IDI AFSPP P GVAAV R F+V+  TF+RVL++ IKDG+  A+ A
Sbjct:   32 AHRLKAAQKLEGRTWEKDGQAALYLMRGATFSPIVMTGGELDNIIRDVAHPHPGLHALLTFSAIDIAAFSPPRPTGVAAVTRPFDVHLDTFIRVLEVFIKDGMAGASPA 140
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5KCA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.430e-21
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:    1 ANLAKETHRQDSKVWLMKGQVCWFVVRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAAARN 336
            A+  KE  + + + W   GQ   F++RG TF+PV M  +D D I R +AH +  +H LL+ G++DI AFSPP P GVAAV R+F+V+F  F+ V KL I+DG+  A  A R+
Sbjct:  136 AHRFKEAQKLEGRTWEKDGQAVLFLLRGATFSPVLMTASDVDLIIREVAHPHPGLHSLLTLGSVDIAAFSPPRPAGVAAVTRTFDVHFYVFVSVPKLFIEDGMQGAPQAGRD 247
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5JE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE84_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.940e-20
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 3 
Query:  345 LINELQLIADGLRDYCQVHHAEFAGRERDVFARFKQDANLDWSDFVSEVAVKARGLRQANPLAPPLAGTGGAVTPPQFART 587
               EL  I++ LR Y   H AEF GRE DVFARFKQDANLDW+DFVS +  +AR LRQ N LAPP   T GA+  PQF+RT
Sbjct:   92 FFRELFRISEDLRRYSSRHCAEFKGREADVFARFKQDANLDWADFVSRLTTEARALRQRNTLAPPPPNTVGAIQVPQFSRT 172
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5JS51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS51_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.950e-20
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 3 
Query:  345 LINELQLIADGLRDYCQVHHAEFAGRERDVFARFKQDANLDWSDFVSEVAVKARGLRQANPLAPPLAGTGGAVTPPQFART 587
               EL  I++ LR Y   H AEF GRE DVFARFK DANLDW+DFVS +  +AR LRQ N LAPP   T GA+  PQF+RT
Sbjct:   92 FFRELFRISENLRRYSSRHCAEFKGREADVFARFKHDANLDWADFVSRLTTEARALRQRNTLAPPPPNTVGAIQVPQFSRT 172
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5KAP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.030e-20
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   76 VRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAA 327
            +R  TF+P+ M   + D+I R +AH +  +H LL++  IDI AFSPP PPGVAAV R+F+V+F TF+RVL++ IKDG+  A+AA
Sbjct:    1 MRAATFSPIVMTGGELDHIIRDVAHPHPGLHALLTFSAIDIAAFSPPRPPGVAAVTRTFDVHFDTFIRVLEVFIKDGMAGASAA 84
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5K8N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.730e-20
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:   76 VRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAA 327
            +RG TF+P+ M   + D+I R +AH +  +H LL++  IDI AFSPP PPGVAAV R+F+V+  TF+RVL++ IKDG+  A+AA
Sbjct:    1 MRGATFSPIVMTGGELDHIIRDVAHPHPGLHALLTFSAIDIAAFSPPRPPGVAAVTRTFDVHLDTFIRVLEVFIKDGMAGASAA 84
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5JJR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR9_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.700e-20
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   76 VRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAA 327
            +RG TF+P+ M   + DNI R +AH +  +H LL++  IDI AFSPP PPGVAAV R+F+V+  TF+RVL++ IKDG+  A+ A
Sbjct:    1 MRGATFSPIVMTGGELDNIIRDVAHPHPGLHALLTFSAIDIAAFSPPRPPGVAAVTRTFDVHLDTFIRVLEVFIKDGMAGASPA 84
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5JVN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.270e-18
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:  345 LINELQLIADGLRDYCQVHHAEFAGRERDVFARFKQDANLDWSDFVSEVAVKARGLRQANPLAPPLAGTGGAVTPPQFART 587
               EL  I++ LR Y   H  EF GRE DVFA+FKQDANLDW+DFVS +  +A  LRQ N LAPP   T GA+  PQF+RT
Sbjct:  144 FFRELFRISEDLRRYSSRHCIEFKGREADVFAKFKQDANLDWADFVSRLTTEASALRQRNTLAPPPPNTVGAIQVPQFSRT 224
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BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5KC38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC38_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.290e-17
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  345 LINELQLIADGLRDYCQVHHAEFAGRERDVFARFKQDANLDWSDFVSEVAVKARGLRQANPLAPPLAGTGGAVTPPQF 578
               EL  I++ LR Y   H AEF GRE DVFARFKQDANLDW+DFV  +  +AR LRQ N LAPP   T GA+  P  
Sbjct:   15 FFRELFRISENLRRYSSRHCAEFKGREADVFARFKQDANLDWADFVGRLTTEARALRQRNTLAPPPPNTVGAIQVPHI 92
[Close]
BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.200e-17
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   76 VRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDITAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAA 324
            +RG TF+P+ M   + D+I R +AH +  +H LL++  IDI AFSPP PPGVAAV R+F+V+  TF+RVL++ IKDG+  A+A
Sbjct:    1 MRGATFSPIVMTGGELDHIIRDVAHPHPGLHALLTFSAIDIAAFSPPRPPGVAAVTRTFDVHLDTFIRVLEVFIKDGMAGASA 83
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5LI23_9PHAE7.450e-2144.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCA6_9PHAE8.430e-2145.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE84_9PHAE1.940e-2060.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS51_9PHAE3.950e-2059.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAP6_9PHAE4.030e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8N4_9PHAE4.730e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR9_9PHAE5.700e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN8_9PHAE2.270e-1856.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC38_9PHAE1.290e-1756.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K312_9PHAE2.200e-1751.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2410493..2411094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001610.2
Exons2
Model size591
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15663.1prot_C-linearis_contig8.15663.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2410541..2411067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.3628473-UTR-C-linearis_contig8:2410492..24105401622930502.3628473-UTR-C-linearis_contig8:2410492..2410540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2410493..2410540 +
1690881102.6912313-UTR-C-linearis_contig8:2410492..24105401690881102.6912313-UTR-C-linearis_contig8:2410492..2410540Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2410493..2410540 +
1622930502.4173617-UTR-C-linearis_contig8:2411067..24110941622930502.4173617-UTR-C-linearis_contig8:2411067..2411094Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2411068..2411094 +
1690881102.735898-UTR-C-linearis_contig8:2411067..24110941690881102.735898-UTR-C-linearis_contig8:2411067..2411094Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2411068..2411094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.382964-CDS-C-linearis_contig8:2410540..24107471622930502.382964-CDS-C-linearis_contig8:2410540..2410747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2410541..2410747 +
1690881102.7046747-CDS-C-linearis_contig8:2410540..24107471690881102.7046747-CDS-C-linearis_contig8:2410540..2410747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2410541..2410747 +
1622930502.3998578-CDS-C-linearis_contig8:2410758..24110671622930502.3998578-CDS-C-linearis_contig8:2410758..2411067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2410759..2411067 +
1690881102.7170534-CDS-C-linearis_contig8:2410758..24110671690881102.7170534-CDS-C-linearis_contig8:2410758..2411067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2410759..2411067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15663.1

>prot_C-linearis_contig8.15663.1 ID=prot_C-linearis_contig8.15663.1|Name=mRNA_C-linearis_contig8.15663.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MKGQVCWFVVRGGTFAPVPMEIADFDNITRSLAHYNADMHPLLSWGTIDI
TAFSPPLPPGVAAVPRSFEVYFSTFLRVLKLDIKDGITNAAAAARNIRPS
STSSSSSPMASGTTARSTMRSLPGGSEMSSRGSSRTRTWTGATSSARWPS
RRGGCVRQTPSPPPSPAPGGR*
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mRNA from alignment at C-linearis_contig8:2410493..2411094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15663.1 ID=mRNA_C-linearis_contig8.15663.1|Name=mRNA_C-linearis_contig8.15663.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at C-linearis_contig8:2410493..2411094+ (Chordaria linearis ClinC8C monoicous)
GCCAACCTAGCCAAGGAGACTCACCGGCAAGACTCCAAGGTCTGGCTCAT
GAAAGGCCAGGTCTGCTGGTTCGTGGTACGGGGCGGCACCTTTGCGCCCG
TCCCAATGGAAATCGCCGACTTCGACAACATCACTCGATCGTTGGCGCAC
TACAACGCCGATATGCACCCTCTCCTCAGTTGGGGAACCATCGACATCAC
GGCCTTTTCACCGCCGCTCCCGCCTGGAGTAGCGGCGGTCCCGCGGTCTT
TCGAGGTCTACTCGAGGTCTACTTTAGTACATTCCTGCGCGTGCTCAAAC
TTGACATCAAGGATGGTATAACCAACGCCGCCGCCGCGGCACGCAACATT
CGACCCTCATCAACGAGCTCCAGCTCATCGCCGATGGCCTCCGGGACTAC
TGCCAGGTCCACCATGCGGAGTTTGCCGGGCGGGAGCGAGATGTCTTCGC
GCGGTTCAAGCAGGACGCGAACCTGGACTGGAGCGACTTCGTCAGCGAGG
TGGCCGTCAAGGCGAGGGGGCTGCGTCAGGCAAACCCCCTCGCCCCCCCC
CTCGCCGGCACCGGGGGGGCGGTGACGCCGCCGCAGTTCGCCCGCACGTC
TC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2410493..2411094+

>mRNA_C-linearis_contig8.15663.1 ID=mRNA_C-linearis_contig8.15663.1|Name=mRNA_C-linearis_contig8.15663.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig8:2410493..2411094+ (Chordaria linearis ClinC8C monoicous)
ATGAAAGGCCAGGTCTGCTGGTTCGTGGTACGGGGCGGCACCTTTGCGCC
CGTCCCAATGGAAATCGCCGACTTCGACAACATCACTCGATCGTTGGCGC
ACTACAACGCCGATATGCACCCTCTCCTCAGTTGGGGAACCATCGACATC
ACGGCCTTTTCACCGCCGCTCCCGCCTGGAGTAGCGGCGGTCCCGCGGTC
TTTCGAGATGAAAGGCCAGGTCTGCTGGTTCGTGGTACGGGGCGGCACCT
TTGCGCCCGTCCCAATGGAAATCGCCGACTTCGACAACATCACTCGATCG
TTGGCGCACTACAACGCCGATATGCACCCTCTCCTCAGTTGGGGAACCAT
CGACATCACGGCCTTTTCACCGCCGCTCCCGCCTGGAGTAGCGGCGGTCC
CGCGGTCTTTCGAGGTCTACTTTAGTACATTCCTGCGCGTGCTCAAACTT
GACATCAAGGATGGTATAACCAACGCCGCCGCCGCGGCACGCAACATTCG
ACCCTCATCAACGAGCTCCAGCTCATCGCCGATGGCCTCCGGGACTACTG
CCAGGTCCACCATGCGGAGTTTGCCGGGCGGGAGCGAGATGTCTTCGCGC
GGTTCAAGCAGGACGCGAACCTGGACTGGAGCGACTTCGTCAGCGAGGTG
GCCGTCAAGGCGAGGGGGCTGCGTCAGGCAAACCCCCTCGCCCCCCCCCT
CGCCGGCACCGGGGGGGCGGTGAGTCTACTTTAGTACATTCCTGCGCGTG
CTCAAACTTGACATCAAGGATGGTATAACCAACGCCGCCGCCGCGGCACG
CAACATTCGACCCTCATCAACGAGCTCCAGCTCATCGCCGATGGCCTCCG
GGACTACTGCCAGGTCCACCATGCGGAGTTTGCCGGGCGGGAGCGAGATG
TCTTCGCGCGGTTCAAGCAGGACGCGAACCTGGACTGGAGCGACTTCGTC
AGCGAGGTGGCCGTCAAGGCGAGGGGGCTGCGTCAGGCAAACCCCCTCGC
CCCCCCCCTCGCCGGCACCGGGGGGGCGGTGA
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