mRNA_C-linearis_contig112.1546.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI) HSP 1 Score: 537 bits (1383), Expect = 4.690e-184 Identity = 273/309 (88.35%), Postives = 287/309 (92.88%), Query Frame = 1
Query: 148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDTRQARDWASKAGMGAQGDAFVEGGARVAASTASLELNELINALTSYLRSQSLWVRREGRWDNDEM 1074
GFLVVATRVR+NEFNHD+LACDVARDFRVAYRDVEALYGR AMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVA+RRKANVIISFNNFPAKDSVPFINELRELG+SM + GPLGDNLSGIAKAV+GLPLV+GFA+QGLSLAEEW PKAA+ VGS LSDVPQEFKPSP+ATWDL+TDRYSVRNNLVLQFKRDTIDQSPQLAE LFNRFGRDGELEFSR LDGTHVTPNTPDFRDTRQARDWA +AGMGAQGDAFVEGGARVAASTASLEL+ELI ALTSYLRSQSLWVRREGRWD+DEM
Sbjct: 168 GFLVVATRVRLNEFNHDQLACDVARDFRVAYRDVEALYGRTAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVARRRKANVIISFNNFPAKDSVPFINELRELGLSMENFGPLGDNLSGIAKAVSGLPLVNGFASQGLSLAEEWGPKAASAVGSMLSDVPQEFKPSPEATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAEVLFNRFGRDGELEFSR-------------LDGTHVTPNTPDFRDTRQARDWADRAGMGAQGDAFVEGGARVAASTASLELDELIKALTSYLRSQSLWVRREGRWDSDEM 463
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A836CAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD4_9STRA) HSP 1 Score: 286 bits (733), Expect = 8.000e-87 Identity = 157/306 (51.31%), Postives = 206/306 (67.32%), Query Frame = 1
Query: 148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKA---NVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPL--VSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDTRQARDWASKAGMGAQGDAFVEG----GARVAASTASLELNELINALTSYLRSQSLW 1038
GF+V+AT +R+NEFNH ELACDVAR+FR+ YRDVEALYGRAA+RR P+FG+GHS+GAK+ VL+NC+P+V DVA+RRKA NV+ISFNNF A+DSVP + E+R LG+ LG L + + + + VA L L +S A +GL+LA EW G+ L VP EFKP+P W L+ Y+VRNNLV+QFK DT+DQS +L+ T+F+RFGRDG L++S L G+HVTPNTPD + +W + A G A G G R +AS A+ EL+ELI + YL+SQ+LW
Sbjct: 143 GFVVLATPIRINEFNHQELACDVAREFRLCYRDVEALYGRAALRRAPVFGIGHSMGAKLQVLINCFPDVRDVARRRKAIEANVLISFNNFAARDSVPLLAEMRALGLR---LGGLSEGVKAVRETVASLGLGGLSPMAERGLNLAVEW--------GAGLGGVPDEFKPAPDELWQLLEGEYAVRNNLVVQFKSDTLDQSGRLSRTIFDRFGRDGALQYS-------------TLQGSHVTPNTPDLSEV-DLDEWLTAAAGGGPAAARAAGVASSGVRASASVAAAELDELIRTVVIYLKSQALW 423
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7S2UUU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUU1_9STRA) HSP 1 Score: 201 bits (512), Expect = 2.980e-56 Identity = 126/319 (39.50%), Postives = 173/319 (54.23%), Query Frame = 1
Query: 148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEV--VDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAG-----LPLV------SGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDT--RQARDWASKAGMGAQGDAFVEGGARVAASTASLELNELINALTSYLRSQSLWVRREGRW 1059
GFLVVAT + N F+H A + R FR A+RD+E LYG A R+P FG+GHSLGAK+ VL +C V D +RR+ANV+ISFNNF A++SVP + E+ LG +G PL D SG VAG LP + + F QG E+ AP+ A +V +S++ EF P P+ W V D+Y V+ NL++QFK+D+IDQSP L++ L + R G LEF R LDG H+TP D ++ + DW D F S A +E E++ + ++LR S+W +RE W
Sbjct: 2 GFLVVATPIMANTFDHRAEAMESCRQFRSAWRDIEDLYGPAQANRLPQFGLGHSLGAKLIVLSSCLRGVGEKDPIERRRANVLISFNNFSARESVPLLEEIGALGKDLGQFQPLLDQFSGQVSNVAGKVQTQLPRIEKSLFSTSFLKQGFEAVEKVAPQIAGIVSDTVSNIEFEFSPDPEEMWQAVEDQYPVKKNLIIQFKKDSIDQSPYLSQLLDEKLDRQGTLEFIR-------------LDGNHLTPVMQDIQNDWFKAQPDWTKSKFT----DEFQ--------SLAMMEFEEMLGIVINFLRENSVW-QREQTW 294
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: W7TQQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQQ9_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.370e-28 Identity = 101/279 (36.20%), Postives = 143/279 (51.25%), Query Frame = 1
Query: 145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVD--------VAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDL---GPLGD-----------NLSGIAKAVAGLPLVSGF--ATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTD--------------RYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTP 867
+G+ V+AT + + F+H A +A + VE +YG +++P+FG+GHSLGAK+ +LL P + A R+ANV+++FNNF AK SVP + ELRELG S+ + G L D NLSG + A SGF A++GL++A ++ + S VP +F PSP+ TW L++ Y+V NNLV+ F +DTIDQS +L L R GR+G R V L GTH+TPNTP
Sbjct: 182 QGYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPPPSLPSFSSSSAPTAGPRRANVLVAFNNFSAKQSVPLLEELRELGQSVAGMDLSGKLEDISRMVSSLAALNLSGASSPNAQRETTSGFDLASKGLTMAMDF------LSSLPTSGVP-DFTPSPEETWALLSSPPLFPSSSLPSSSPSYAVLNNLVVSFDKDTIDQSEELVALLRER-GREGGRGGGRVEHVR--------LVGTHLTPNTP 444
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7S1XE42_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XE42_9RHOD) HSP 1 Score: 108 bits (271), Expect = 8.610e-22 Identity = 88/254 (34.65%), Postives = 126/254 (49.61%), Query Frame = 1
Query: 145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRR--IPLFGVGHSLGAKVHVLLNCYPEVV-DVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAV------VGSALSDVP-QEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFR 876
+G +VVAT V + +FNH +LA D A F +E+ R + R +P+ GVGHSLGAK+HVLLN +V D R NV+IS+NNF A S+P N++ +G +G + + G+ V + L + E AV + +AL + +EF P P D++ ++Y+V NN V+QF D+ID S LA L RF SR L+ GTH+TP TPD +
Sbjct: 122 QGCIVVATPVGL-QFNHTQLARDSAITFMETRAAIESSKVRESSRIGFLPVLGVGHSLGAKLHVLLNSDEDVRRDYVGARIGNVLISYNNFSALQSIPRWNDM------IGGMGAASERIRGVRPGVGSILDGVRSIANSLGIPERSLDSLNAVGPFLDGLNTALDSLQVEEFLPPPAKVDDMLQNQYAVANNCVVQFVEDSIDDSDNLARVLTTRFS-------SRNTVFRRLS-------GTHLTPVTPDLQ 354
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: U9VHV5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VHV5_9CYAN) HSP 1 Score: 102 bits (255), Expect = 7.000e-21 Identity = 75/247 (30.36%), Postives = 114/247 (46.15%), Query Frame = 1
Query: 145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAM---RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFR 876
+G+++VAT +N F+HD +A +V F D +Y R + R +P++G+GHS+G KVH+L+ V R N++ISFNN+PA+ S+P + + + +AP D EF PSP T DLV DRY+V NL+++F++DTIDQ+ L++ LF RF Q +++ +L GTH TP D R
Sbjct: 47 QGYIIVATPF-INTFDHDAIAAEVLTTF-----DQAMIYLRRQVIGDRYLPIYGMGHSMGCKVHLLIASLYNV-----DRAGNILISFNNYPARKSIPLLEQFVQ-----------------------------------------FAP-----------DFDIEFTPSPGQTLDLVRDRYTVGRNLLIKFRKDTIDQTYDLSDVLFQRFP-----------QFTAIQ----ILQGTHTTPVAQDVR 215
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A1U7J1A9_9CYAN (Uncharacterized protein n=6 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1U7J1A9_9CYAN) HSP 1 Score: 101 bits (252), Expect = 2.030e-20 Identity = 73/241 (30.29%), Postives = 110/241 (45.64%), Query Frame = 1
Query: 142 GKGFLVVATRVRVNEFNHDELACDVARDFRVA--YRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
G+G+LVVAT +N F+H +A +V F A Y D L A R+P++G+GHS+G KVH+L+N EV R N+ ISFNN+PA+ S+PF+ ++ + + EF P P+AT LV DRY V +NL+++F+ DTIDQ+ L+E L RF ++ + + +A+ G G +P
Sbjct: 46 GQGYLVVATPF-INTFDHAAIAQEVLVTFGQALRYLDKRGL----ADYRMPIYGLGHSMGCKVHLLINSLWEV-----ERAGNIYISFNNYPARRSIPFLEQVVQFNPAFN----------------------------------------------------VEFTPDPEATLALVRDRYPVSHNLLIKFRNDTIDQTRPLSEVLVRRFPESTTVQILQGSHTTPIAQELGWQPGVAFSP 224
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: UPI001A09D48D (DUF1350 family protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI001A09D48D) HSP 1 Score: 100 bits (248), Expect = 7.040e-20 Identity = 67/238 (28.15%), Postives = 110/238 (46.22%), Query Frame = 1
Query: 145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
+G+L+VAT +N F+H+ +A +V F A R ++ + R +P++G+GHS+G KVH+L+N EV R N+ +SFNN+PAK S+PF+ ++ + ++ EF PSP+AT LV D+Y V NL+++F+ DT+DQ+ L+E L RF ++ + + +A+ G TP
Sbjct: 47 QGYLIVATPF-INTFDHEAIAEEVLITFGQALRYLDQRVLTSQQRYLPIYGLGHSMGCKVHLLINSLWEV-----ERAGNIYMSFNNYPAKRSIPFLEQVVQFNPALN----------------------------------------------------VEFSPSPEATLALVRDQYPVPRNLLIKFRNDTLDQTRPLSEVLVRRFPDLTTVQILQGSHTTPIAQDIAWQPGEAFTP 226
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: L1JAP7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAP7_GUITC) HSP 1 Score: 102 bits (255), Expect = 1.080e-19 Identity = 85/268 (31.72%), Postives = 125/268 (46.64%), Query Frame = 1
Query: 154 LVVATRVR-VNEFNHDELACDVARDFRVAYRDVEALYGRAAM--RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKR-RKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQ---GLSLAEEWAPKAAAVVGSALSDVPQ--------------EFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRF-----GRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRD 879
+V+AT + +H + A + A F A + ++ G +P G+GHSLG KVH+L+N + + R R ANV I+FNN+ AK S+P ++EL +L M G+A A L +S FA L + + ++A+ V S + + + EF PSP+ T L+ D YSV NL ++F D IDQS L E L ++F G G L+ R L GTH+TPNTP +
Sbjct: 118 IVIATPCAGLTGMDHYKAAFEAAYKFAGAAKALQGELGSDMFDPAELPTIGMGHSLGCKVHLLINSIEDTKKIIGRVRAANVHIAFNNYDAKKSIPILSELSKLQSEMS---------KGLAAAAPVLESISAFANSMKTNSQLKDVFGSESASKVFSFIEMLSETGKNYAANNQEPLDEFSPSPEDTMRLLKDEYSVSRNLAVKFLSDDIDQSILLCEALRDKFTSPTTGIGGRLDLKR-------------LPGTHITPNTPSLEN 363
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7T5JF80_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. BL0902 TaxID=1115757 RepID=A0A7T5JF80_9CYAN) HSP 1 Score: 99.8 bits (247), Expect = 1.390e-19 Identity = 69/238 (28.99%), Postives = 114/238 (47.90%), Query Frame = 1
Query: 145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
+G+++VAT +N F+H+ +A +V F A R ++ G +P++G+GHS+G KVH+L+N EV R N+ +SFNN+PAK S+PF+ ++ + ++ DV EF P P+AT LV D+Y V +NL+++F+ DTIDQ+ LA+TL RF + ++ + + +A+ G G +P
Sbjct: 52 QGYIIVATPF-INTFDHEAIAEEVLITFSQALRYLDRRLG-INDPYLPIYGLGHSMGCKVHLLINSLWEV-----DRAGNIYMSFNNYPAKRSIPFLEQVAQFSPAL--------------------------------------------------DV--EFTPGPEATLALVRDQYPVAHNLLIKFRNDTIDQTRPLADTLVPRFPQQTTVQILQGSHTTPIAQDIGWQPGDSFSP 230 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig112.1546.1 >prot_C-linearis_contig112.1546.1 ID=prot_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=345bp MVVAPGQPREPSSSPPSPPTCFPPPIAPPTPPPGKGFLVVATRVRVNEFNback to top mRNA from alignment at C-linearis_contig112:389363..393798+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig112.1546.1 ID=mRNA_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4436bp|location=Sequence derived from alignment at C-linearis_contig112:389363..393798+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig112:389363..393798+ >mRNA_C-linearis_contig112.1546.1 ID=mRNA_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at C-linearis_contig112:389363..393798+ (Chordaria linearis ClinC8C monoicous)back to top |