mRNA_C-linearis_contig112.1546.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig112.1546.1
Unique NamemRNA_C-linearis_contig112.1546.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 537 bits (1383), Expect = 4.690e-184
Identity = 273/309 (88.35%), Postives = 287/309 (92.88%), Query Frame = 1
Query:  148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDTRQARDWASKAGMGAQGDAFVEGGARVAASTASLELNELINALTSYLRSQSLWVRREGRWDNDEM 1074
            GFLVVATRVR+NEFNHD+LACDVARDFRVAYRDVEALYGR AMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVA+RRKANVIISFNNFPAKDSVPFINELRELG+SM + GPLGDNLSGIAKAV+GLPLV+GFA+QGLSLAEEW PKAA+ VGS LSDVPQEFKPSP+ATWDL+TDRYSVRNNLVLQFKRDTIDQSPQLAE LFNRFGRDGELEFSR             LDGTHVTPNTPDFRDTRQARDWA +AGMGAQGDAFVEGGARVAASTASLEL+ELI ALTSYLRSQSLWVRREGRWD+DEM
Sbjct:  168 GFLVVATRVRLNEFNHDQLACDVARDFRVAYRDVEALYGRTAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVARRRKANVIISFNNFPAKDSVPFINELRELGLSMENFGPLGDNLSGIAKAVSGLPLVNGFASQGLSLAEEWGPKAASAVGSMLSDVPQEFKPSPEATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAEVLFNRFGRDGELEFSR-------------LDGTHVTPNTPDFRDTRQARDWADRAGMGAQGDAFVEGGARVAASTASLELDELIKALTSYLRSQSLWVRREGRWDSDEM 463          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A836CAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD4_9STRA)

HSP 1 Score: 286 bits (733), Expect = 8.000e-87
Identity = 157/306 (51.31%), Postives = 206/306 (67.32%), Query Frame = 1
Query:  148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKA---NVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPL--VSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDTRQARDWASKAGMGAQGDAFVEG----GARVAASTASLELNELINALTSYLRSQSLW 1038
            GF+V+AT +R+NEFNH ELACDVAR+FR+ YRDVEALYGRAA+RR P+FG+GHS+GAK+ VL+NC+P+V DVA+RRKA   NV+ISFNNF A+DSVP + E+R LG+    LG L + +  + + VA L L  +S  A +GL+LA EW        G+ L  VP EFKP+P   W L+   Y+VRNNLV+QFK DT+DQS +L+ T+F+RFGRDG L++S              L G+HVTPNTPD  +     +W + A  G    A   G    G R +AS A+ EL+ELI  +  YL+SQ+LW
Sbjct:  143 GFVVLATPIRINEFNHQELACDVAREFRLCYRDVEALYGRAALRRAPVFGIGHSMGAKLQVLINCFPDVRDVARRRKAIEANVLISFNNFAARDSVPLLAEMRALGLR---LGGLSEGVKAVRETVASLGLGGLSPMAERGLNLAVEW--------GAGLGGVPDEFKPAPDELWQLLEGEYAVRNNLVVQFKSDTLDQSGRLSRTIFDRFGRDGALQYS-------------TLQGSHVTPNTPDLSEV-DLDEWLTAAAGGGPAAARAAGVASSGVRASASVAAAELDELIRTVVIYLKSQALW 423          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7S2UUU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUU1_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.980e-56
Identity = 126/319 (39.50%), Postives = 173/319 (54.23%), Query Frame = 1
Query:  148 GFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEV--VDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAG-----LPLV------SGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRDT--RQARDWASKAGMGAQGDAFVEGGARVAASTASLELNELINALTSYLRSQSLWVRREGRW 1059
            GFLVVAT +  N F+H   A +  R FR A+RD+E LYG A   R+P FG+GHSLGAK+ VL +C   V   D  +RR+ANV+ISFNNF A++SVP + E+  LG  +G   PL D  SG    VAG     LP +      + F  QG    E+ AP+ A +V   +S++  EF P P+  W  V D+Y V+ NL++QFK+D+IDQSP L++ L  +  R G LEF R             LDG H+TP   D ++   +   DW          D F         S A +E  E++  + ++LR  S+W +RE  W
Sbjct:    2 GFLVVATPIMANTFDHRAEAMESCRQFRSAWRDIEDLYGPAQANRLPQFGLGHSLGAKLIVLSSCLRGVGEKDPIERRRANVLISFNNFSARESVPLLEEIGALGKDLGQFQPLLDQFSGQVSNVAGKVQTQLPRIEKSLFSTSFLKQGFEAVEKVAPQIAGIVSDTVSNIEFEFSPDPEEMWQAVEDQYPVKKNLIIQFKKDSIDQSPYLSQLLDEKLDRQGTLEFIR-------------LDGNHLTPVMQDIQNDWFKAQPDWTKSKFT----DEFQ--------SLAMMEFEEMLGIVINFLRENSVW-QREQTW 294          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: W7TQQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQQ9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.370e-28
Identity = 101/279 (36.20%), Postives = 143/279 (51.25%), Query Frame = 1
Query:  145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVD--------VAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDL---GPLGD-----------NLSGIAKAVAGLPLVSGF--ATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTD--------------RYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTP 867
            +G+ V+AT +  + F+H   A  +A  +      VE +YG    +++P+FG+GHSLGAK+ +LL   P  +          A  R+ANV+++FNNF AK SVP + ELRELG S+  +   G L D           NLSG +   A     SGF  A++GL++A ++      +     S VP +F PSP+ TW L++                Y+V NNLV+ F +DTIDQS +L   L  R GR+G     R   V         L GTH+TPNTP
Sbjct:  182 QGYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPPPSLPSFSSSSAPTAGPRRANVLVAFNNFSAKQSVPLLEELRELGQSVAGMDLSGKLEDISRMVSSLAALNLSGASSPNAQRETTSGFDLASKGLTMAMDF------LSSLPTSGVP-DFTPSPEETWALLSSPPLFPSSSLPSSSPSYAVLNNLVVSFDKDTIDQSEELVALLRER-GREGGRGGGRVEHVR--------LVGTHLTPNTP 444          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7S1XE42_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XE42_9RHOD)

HSP 1 Score: 108 bits (271), Expect = 8.610e-22
Identity = 88/254 (34.65%), Postives = 126/254 (49.61%), Query Frame = 1
Query:  145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRR--IPLFGVGHSLGAKVHVLLNCYPEVV-DVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAV------VGSALSDVP-QEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFR 876
            +G +VVAT V + +FNH +LA D A  F      +E+   R + R   +P+ GVGHSLGAK+HVLLN   +V  D    R  NV+IS+NNF A  S+P  N++      +G +G   + + G+   V  +          L + E       AV      + +AL  +  +EF P P    D++ ++Y+V NN V+QF  D+ID S  LA  L  RF        SR      L+       GTH+TP TPD +
Sbjct:  122 QGCIVVATPVGL-QFNHTQLARDSAITFMETRAAIESSKVRESSRIGFLPVLGVGHSLGAKLHVLLNSDEDVRRDYVGARIGNVLISYNNFSALQSIPRWNDM------IGGMGAASERIRGVRPGVGSILDGVRSIANSLGIPERSLDSLNAVGPFLDGLNTALDSLQVEEFLPPPAKVDDMLQNQYAVANNCVVQFVEDSIDDSDNLARVLTTRFS-------SRNTVFRRLS-------GTHLTPVTPDLQ 354          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: U9VHV5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VHV5_9CYAN)

HSP 1 Score: 102 bits (255), Expect = 7.000e-21
Identity = 75/247 (30.36%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAM---RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFR 876
            +G+++VAT   +N F+HD +A +V   F     D   +Y R  +   R +P++G+GHS+G KVH+L+     V      R  N++ISFNN+PA+ S+P + +  +                                         +AP           D   EF PSP  T DLV DRY+V  NL+++F++DTIDQ+  L++ LF RF            Q +++     +L GTH TP   D R
Sbjct:   47 QGYIIVATPF-INTFDHDAIAAEVLTTF-----DQAMIYLRRQVIGDRYLPIYGMGHSMGCKVHLLIASLYNV-----DRAGNILISFNNYPARKSIPLLEQFVQ-----------------------------------------FAP-----------DFDIEFTPSPGQTLDLVRDRYTVGRNLLIKFRKDTIDQTYDLSDVLFQRFP-----------QFTAIQ----ILQGTHTTPVAQDVR 215          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A1U7J1A9_9CYAN (Uncharacterized protein n=6 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1U7J1A9_9CYAN)

HSP 1 Score: 101 bits (252), Expect = 2.030e-20
Identity = 73/241 (30.29%), Postives = 110/241 (45.64%), Query Frame = 1
Query:  142 GKGFLVVATRVRVNEFNHDELACDVARDFRVA--YRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
            G+G+LVVAT   +N F+H  +A +V   F  A  Y D   L    A  R+P++G+GHS+G KVH+L+N   EV      R  N+ ISFNN+PA+ S+PF+ ++ +   +                                                       EF P P+AT  LV DRY V +NL+++F+ DTIDQ+  L+E L  RF     ++  +    + +A+  G   G   +P
Sbjct:   46 GQGYLVVATPF-INTFDHAAIAQEVLVTFGQALRYLDKRGL----ADYRMPIYGLGHSMGCKVHLLINSLWEV-----ERAGNIYISFNNYPARRSIPFLEQVVQFNPAFN----------------------------------------------------VEFTPDPEATLALVRDRYPVSHNLLIKFRNDTIDQTRPLSEVLVRRFPESTTVQILQGSHTTPIAQELGWQPGVAFSP 224          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: UPI001A09D48D (DUF1350 family protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI001A09D48D)

HSP 1 Score: 100 bits (248), Expect = 7.040e-20
Identity = 67/238 (28.15%), Postives = 110/238 (46.22%), Query Frame = 1
Query:  145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
            +G+L+VAT   +N F+H+ +A +V   F  A R ++     +  R +P++G+GHS+G KVH+L+N   EV      R  N+ +SFNN+PAK S+PF+ ++ +   ++                                                      EF PSP+AT  LV D+Y V  NL+++F+ DT+DQ+  L+E L  RF     ++  +    + +A+      G   TP
Sbjct:   47 QGYLIVATPF-INTFDHEAIAEEVLITFGQALRYLDQRVLTSQQRYLPIYGLGHSMGCKVHLLINSLWEV-----ERAGNIYMSFNNYPAKRSIPFLEQVVQFNPALN----------------------------------------------------VEFSPSPEATLALVRDQYPVPRNLLIKFRNDTLDQTRPLSEVLVRRFPDLTTVQILQGSHTTPIAQDIAWQPGEAFTP 226          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: L1JAP7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAP7_GUITC)

HSP 1 Score: 102 bits (255), Expect = 1.080e-19
Identity = 85/268 (31.72%), Postives = 125/268 (46.64%), Query Frame = 1
Query:  154 LVVATRVR-VNEFNHDELACDVARDFRVAYRDVEALYGRAAM--RRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKR-RKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQ---GLSLAEEWAPKAAAVVGSALSDVPQ--------------EFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRF-----GRDGELEFSRQVQVSSLAKGRGVLDGTHVTPNTPDFRD 879
            +V+AT    +   +H + A + A  F  A + ++   G        +P  G+GHSLG KVH+L+N   +   +  R R ANV I+FNN+ AK S+P ++EL +L   M           G+A A   L  +S FA        L + +  ++A+ V S +  + +              EF PSP+ T  L+ D YSV  NL ++F  D IDQS  L E L ++F     G  G L+  R             L GTH+TPNTP   +
Sbjct:  118 IVIATPCAGLTGMDHYKAAFEAAYKFAGAAKALQGELGSDMFDPAELPTIGMGHSLGCKVHLLINSIEDTKKIIGRVRAANVHIAFNNYDAKKSIPILSELSKLQSEMS---------KGLAAAAPVLESISAFANSMKTNSQLKDVFGSESASKVFSFIEMLSETGKNYAANNQEPLDEFSPSPEDTMRLLKDEYSVSRNLAVKFLSDDIDQSILLCEALRDKFTSPTTGIGGRLDLKR-------------LPGTHITPNTPSLEN 363          
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Match: A0A7T5JF80_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. BL0902 TaxID=1115757 RepID=A0A7T5JF80_9CYAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.390e-19
Identity = 69/238 (28.99%), Postives = 114/238 (47.90%), Query Frame = 1
Query:  145 KGFLVVATRVRVNEFNHDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNCYPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDNLSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPSPQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFSRQVQVSSLAKGRGVLDGTHVTP 858
            +G+++VAT   +N F+H+ +A +V   F  A R ++   G      +P++G+GHS+G KVH+L+N   EV      R  N+ +SFNN+PAK S+PF+ ++ +   ++                                                  DV  EF P P+AT  LV D+Y V +NL+++F+ DTIDQ+  LA+TL  RF +   ++  +    + +A+  G   G   +P
Sbjct:   52 QGYIIVATPF-INTFDHEAIAEEVLITFSQALRYLDRRLG-INDPYLPIYGLGHSMGCKVHLLINSLWEV-----DRAGNIYMSFNNYPAKRSIPFLEQVAQFSPAL--------------------------------------------------DV--EFTPGPEATLALVRDQYPVAHNLLIKFRNDTIDQTRPLADTLVPRFPQQTTVQILQGSHTTPIAQDIGWQPGDSFSP 230          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig112.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS7_ECTSI4.690e-18488.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAD4_9STRA8.000e-8751.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUU1_9STRA2.980e-5639.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TQQ9_9STRA4.370e-2836.20Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1XE42_9RHOD8.610e-2234.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
U9VHV5_9CYAN7.000e-2130.36Uncharacterized protein n=1 Tax=Leptolyngbya sp. H... [more]
A0A1U7J1A9_9CYAN2.030e-2030.29Uncharacterized protein n=6 Tax=Cyanobacteria/Mela... [more]
UPI001A09D48D7.040e-2028.15DUF1350 family protein n=1 Tax=Leptolyngbyaceae cy... [more]
L1JAP7_GUITC1.080e-1931.72Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7T5JF80_9CYAN1.390e-1928.99Uncharacterized protein n=1 Tax=Leptolyngbya sp. B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig112contigC-linearis_contig112:389363..393798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score543.5
Seed ortholog evalue7.1e-152
Seed eggNOG ortholog2880.D7FVS7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1350)
EggNOG OGs2QSXN@2759,COG1084@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1877
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig112.1546.1prot_C-linearis_contig112.1546.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig112 389405..392998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.35515-UTR-C-linearis_contig112:389362..3894041622927494.35515-UTR-C-linearis_contig112:389362..389404Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 389363..389404 +
1690879731.4252205-UTR-C-linearis_contig112:389362..3894041690879731.4252205-UTR-C-linearis_contig112:389362..389404Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 389363..389404 +
1622927494.4900565-UTR-C-linearis_contig112:392998..3937981622927494.4900565-UTR-C-linearis_contig112:392998..393798Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 392999..393798 +
1690879731.5166059-UTR-C-linearis_contig112:392998..3937981690879731.5166059-UTR-C-linearis_contig112:392998..393798Chordaria linearis ClinC8C monoicousUTRC-linearis_contig112 392999..393798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.424052-CDS-C-linearis_contig112:389404..3897401622927494.424052-CDS-C-linearis_contig112:389404..389740Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 389405..389740 +
1690879731.4385364-CDS-C-linearis_contig112:389404..3897401690879731.4385364-CDS-C-linearis_contig112:389404..389740Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 389405..389740 +
1622927494.4331656-CDS-C-linearis_contig112:390392..3905261622927494.4331656-CDS-C-linearis_contig112:390392..390526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 390393..390526 +
1690879731.4491448-CDS-C-linearis_contig112:390392..3905261690879731.4491448-CDS-C-linearis_contig112:390392..390526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 390393..390526 +
1622927494.442367-CDS-C-linearis_contig112:390802..3909381622927494.442367-CDS-C-linearis_contig112:390802..390938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 390803..390938 +
1690879731.469283-CDS-C-linearis_contig112:390802..3909381690879731.469283-CDS-C-linearis_contig112:390802..390938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 390803..390938 +
1622927494.4551432-CDS-C-linearis_contig112:391538..3917231622927494.4551432-CDS-C-linearis_contig112:391538..391723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 391539..391723 +
1690879731.4840434-CDS-C-linearis_contig112:391538..3917231690879731.4840434-CDS-C-linearis_contig112:391538..391723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 391539..391723 +
1622927494.466953-CDS-C-linearis_contig112:392159..3922711622927494.466953-CDS-C-linearis_contig112:392159..392271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 392160..392271 +
1690879731.4986084-CDS-C-linearis_contig112:392159..3922711690879731.4986084-CDS-C-linearis_contig112:392159..392271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 392160..392271 +
1622927494.4788282-CDS-C-linearis_contig112:392866..3929981622927494.4788282-CDS-C-linearis_contig112:392866..392998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 392867..392998 +
1690879731.5069451-CDS-C-linearis_contig112:392866..3929981690879731.5069451-CDS-C-linearis_contig112:392866..392998Chordaria linearis ClinC8C monoicousCDSC-linearis_contig112 392867..392998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig112.1546.1

>prot_C-linearis_contig112.1546.1 ID=prot_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=345bp
MVVAPGQPREPSSSPPSPPTCFPPPIAPPTPPPGKGFLVVATRVRVNEFN
HDELACDVARDFRVAYRDVEALYGRAAMRRIPLFGVGHSLGAKVHVLLNC
YPEVVDVAKRRKANVIISFNNFPAKDSVPFINELRELGVSMGDLGPLGDN
LSGIAKAVAGLPLVSGFATQGLSLAEEWAPKAAAVVGSALSDVPQEFKPS
PQATWDLVTDRYSVRNNLVLQFKRDTIDQSPQLAETLFNRFGRDGELEFS
RQVQVSSLAKGRGVLDGTHVTPNTPDFRDTRQARDWASKAGMGAQGDAFV
EGGARVAASTASLELNELINALTSYLRSQSLWVRREGRWDNDEM*
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mRNA from alignment at C-linearis_contig112:389363..393798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig112.1546.1 ID=mRNA_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4436bp|location=Sequence derived from alignment at C-linearis_contig112:389363..393798+ (Chordaria linearis ClinC8C monoicous)
AGAGAATGCGGGCAAGGAAAGCTTGCCGTCCAATCCGAGAGTATGGTAGT CGCACCCGGCCAGCCGAGAGAACCCTCTTCCTCTCCACCCTCCCCCCCTA CCTGTTTCCCGCCTCCGATCGCTCCGCCTACCCCACCCCCCGGTAAAGGG TTCTTGGTGGTGGCGACCCGGGTGCGGGTGAACGAGTTCAACCACGATGA GCTGGCGTGTGACGTCGCGCGCGATTTTCGCGTGGCGTACCGCGACGTGG AGGCGCTGTACGGGCGGGCGGCGATGCGCCGCATTCCGCTTTTCGGGGTG GGCCACTCTCTGGGCGCCAAAGTGCACGTGCTGCTGAACTGCTACCCGGA GGTGGTGGACGTGGCGAAGCGGAGAAAGGTGCGGAGCTGCTTTTTTTAGC AGCGTTCGCCTCGATGCTTTGCTTGTCGCCGGGGGATGCTCAGGACTTTT GTTCATCTGTGGACTAGTGGTGGTAATGTGCAGTGATGAGCAGCGCCTGC TCTAGTGTTTGATCACCTGTGGCCTAGTGGTGGTGATGAAACAGCCTTAG CCTTGTTGTGATGGTTTGGTTGACTGGGTTGGGACAGCAGTGGACATTTT CGGGATAAGGGTGTCCGTCACGGGCAAAAAAATGAATATGCTCTTTCGTG CGCATCTTGGGGCCGAACGAAAAAAAATAGTCGTCTTTCAGTGGCAGCTT TGGCCAACCGCATCTCGCATGCGTTCGTGCTTTGCAGCAAGCTTCCGCAG AAGCGAAACGATGTATATACCACGATCTGGCCACAAGTCAAACAGAATTC TAGCCCATGGCATGCATGCTTGTAGTGCGTTGGCCATTCTGTGGTCACAC CGCATGGAGTGCATGTGCCTCATGCGCACTCTTCCGCTTCTTCCAATGCG CACCGTTGCACCTAATCCAATCTTTGCTCGTTCCTACGCAACATCCCCGC CTTGACCCCCGCTCAATTCGCACTTTTCCGCCCCTCCCGCGCTTGTGCGG TTCTCTCTTGCATGCCCCCCCTTCGCGAAGGCAAACGTTATAATTAGCTT CAACAACTTCCCGGCAAAGGACAGCGTGCCGTTCATCAACGAGCTGCGAG AGCTCGGGGTGTCGATGGGAGACTTGGGGCCGCTGGGCGACAACCTATCG GGGATCGCCAAAGCGTAAGTTGTGCACGCGATGTAGGTACATACACACAC GGCAGAAATCGCAAAACGCACGCTCCAAACACACGAAGAGACACTCCCAA CAACGAAAACGAATCGCCGCCCCCCCGAACCGCCACACACCGAATTACAA CCTACCCCTCCCCCCTCCCCCTCCCCGGCGCTCCCCCGCACCCGCCCAGT CCTAAGCAACACCCACGATCTACTCCTTATTGCCCGTCCTGCCCTCACCC CGCGTTCGTCCTCCTGCTTCTGCCGCGGCTTGTCTGACAGGGTTGCCGGA CTCCCCCTTGTGAGCGGGTTCGCGACGCAAGGGCTGTCCTTGGCGGAAGA GTGGGCACCAAAGGCGGCCGCTGTGGTCGGGTCTGCGTTGTCGGACGTTC CCCAGGAGTTCAAGCCCTCCCCGCAGGTACAGCTCTCAGCCAGCGAGCGC TCCATAGCACTCCGCGTACGTAATCAGCTGTTTCACCAGCGATCGTGTCG CAGGCTACGCTTGCTGGTGGGAGGAGGAGCCAACGGTTGGTTTGGGCCGG CAAGTAGGTGTTGCGTTCCGGTTGGCCACGCAGTGAGCTTGGCGCCCTTG GCGTATTTTCTACAGCATGCGTGTGGGTGCTTCGCGATTTTTCGTGAGTG TCGGCCTCGCTGGTGTGTCTCGACTTGACCAATGGCAAGCAAGATGCTCT CGTTAACCGGGGTGCACGGAGGGCGCGGCCGAGGCGGGAGCGGGGAGCGT AAAAAACTCCGTGCCTTCTTTCTGACGTAAGGGTACAGGGACAACGACTC CCGTGTCTTCGTGATGTTTTCCGTATATTAATTTTCCGCTTAACTGTCAG CGGCCCCATGTACGCCCAACCTTTGAAGAAGAGTCGGTCCGGGGGGGCTG CTGTTTGTAGACACGCTCAACCCTCCCTCACAACCTCGGGATGGTAAGTA GAAATTCAAAATCAACACATGGTTGTGTTGTTTTAAGTGGTAAAGAAGGC GGTCGCTACCTCTTCTCTCGTGCCAGGCTACCTGGGACTTGGTGACGGAC CGGTACTCGGTTCGCAACAACCTCGTGCTGCAGTTCAAGCGCGACACCAT CGACCAGAGCCCGCAGCTGGCGGAGACACTCTTTAATCGCTTCGGCAGGG ACGGGGAGCTAGAATTTTCGAGGCAAGTTCAGGTTTCTTCGCTGGCGAAG GGCAGAGGGGTGTGCGTGCGTGCATGCAAGCGTGTCGTGTGAACGTGCAA AGGTGGTTCCGAGAGTGTTCAGTTATATGTGCAAGGGTATGTTTACCTTG CATGTCGCTTTGTTTTAGTGGTTTTGGACAAAACGCCTGGCACACGAAGG AAGTAAGAGTTTCTCCCAGAGGGACAACAGGATTGTCCCAGATGCCTTCT CTCCGCAGTTTTGTCTCTCTCTCTTTCGCTCGTGTGTCCTTCCTCTTCAC GCGCCTGCCTGCATGCCTGCCCCTTTACTCCCTAGTTTGCCCCCTCCTTT TTATGTTCTCCCTCCTCCGTTGTCTTCCTCTTCCTCTTGATACGGTTCTA CCGTCTTGTCTCTCCACTCACCCTAACACGGCGCCGGCCGTCGTAGGCAT GAACCGACCCCCGACTCCCCCCGCTTGAAACTTGAAATTCTTTGCAGGCT GGACGGCACGCACGTTACCCCCAATACACCGGACTTCCGAGACACGCGGC AAGCGCGGGACTGGGCGAGTAAAGCCGGAATGGGTGCCCAAGGCGATGCT TTCGTAGAGGTGAGGACACGCACCATGCCAAGCGCGCAGTGTCGGATTTA GGGACCAGCTTTGGGGGGTTGGCTCGTGTGGGTTATTTCCTGCAGGTGGG ACGGTCATAACGGCAAAAGTGGGCATTGGCTTGGACACATGAAATAGACG ATGTCGGAGAGGGGAAGAAGATCACCTGCAATTGGATTCGAGATTGGGCT TTGATGATGTGTGTATTTAGCGGGTTCAAAAGCTTTGCCGGGTCGTGACA TTTTGGCACGAGACACTGCTTCTTTCGCTGTCGCGGCTGCTGCCGCTGCT GCTGCTGTTGCTCACAGCCCTTTCAGAAACGGAGACTAGTTCTCGACCGG ACGTTTCACAGGTATAAAACTGTTTTTCCCGTCCTCTTGTCAGTTGTTGA ATCCCACAACCGTATTTTCAATACGTGATGTAGCTCGAATCGCCCGAGGG TAGTCTAGCTTAGCCACTCGCGAGCGCAATTCCGTGGCGTTTACTTCGCT GTCTCTGCAGGCACCGGAGGTGGCTGCGGAGTCTTCCCGCACGCATCCTC CTCTCCCCTCCGCCAACCTATTTCGACGTGTTGACTTGCTCGTTTGTTGA TCAGGGAGGGGCGAGAGTGGCGGCTTCGACCGCAAGCCTTGAGCTGAACG AGCTCATTAACGCCCTCACGTCCTACCTTCGATCTCAGTCCCTGTGGGTG CGACGAGAGGGTCGGTGGGACAACGACGAGATGTAGAATAGAATAGTGGC AGGCACGTGACATGTTGTCAAGATCAAGACCTGGGGTGGGCGAGGAGGGG GCGGAAATACGCCGTCCCCTCTCCTCCTTCAAACAGTCAATCGCCACATT GCATGACGCTCGCGCCTACAATAATTTAGCTGCGCCACTTTCTCGGCTGA TGTTGAGTTTAGTGTTGCAAGGACGTTTTGTGGGGTGCAACGTATGAAGA GGGGAGGGGATGGTGGATGGGAGGCAAAGTGGGTGCACCACAATGAGAAT GGTGTTTTGGCTGATGTCTTGTCTTGGGTGCTTCTCGACGATGGCGCCTG CTCATCGTTTCGAGCCGAGCAAGGGTGCTGTGGGTTGAGCGCCGAAGAAA GTTTTGCGTTGGTCACGTGCTGTTTTGCTGTTGTTCACCTGCAATCAGCA AGGCTCGAAAAGGACTGTGGCACGCAGTTTCATATGTGATGGGCCAAGAA ACCTGCGGCGGAATTTTGAAATCGGCACGACCGAAGATCCTTTTTCGGCG GGTGGCGTCACCCACGGTCGCCTGGTCGGGCAAAAAACTGGGCATCGATG ACTGATGATGGCGTGCCGTCTGAATGGAAAAGGGATTACTCTAAGTCACT GCTGTTTGTGCCCAAGACTACGACCTCTCTCTTTTGTATTGCCATTATGA CCGTCTCCTCCTAGCCCCACCAGGACGTACTTGTTTCTTGAAGCTGCAGC GGCAGATGGACAACAAGCCAGCGTGGGTACAAACATGGACGAGAGACGGG GCGCTATACGTAAGATCCAGATATTACAGGCAGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig112:389363..393798+

>mRNA_C-linearis_contig112.1546.1 ID=mRNA_C-linearis_contig112.1546.1|Name=mRNA_C-linearis_contig112.1546.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at C-linearis_contig112:389363..393798+ (Chordaria linearis ClinC8C monoicous)
ATGGTAGTCGCACCCGGCCAGCCGAGAGAACCCTCTTCCTCTCCACCCTC
CCCCCCTACCTGTTTCCCGCCTCCGATCGCTCCGCCTACCCCACCCCCCG
GTAAAGGGTTCTTGGTGGTGGCGACCCGGGTGCGGGTGAACGAGTTCAAC
CACGATGAGCTGGCGTGTGACGTCGCGCGCGATTTTCGCGTGGCGTACCG
CGACGTGGAGGCGCTGTACGGGCGGGCGGCGATGCGCCGCATTCCGCTTT
TCGGGGTGGGCCACTCTCTGGGCGCCAAAGTGCACGTGCTGCTGAACTGC
TACCCGGAGGTGGTGGACGTGGCGAAGCGGAGAAAGATGGTAGTCGCACC
CGGCCAGCCGAGAGAACCCTCTTCCTCTCCACCCTCCCCCCCTACCTGTT
TCCCGCCTCCGATCGCTCCGCCTACCCCACCCCCCGGTAAAGGGTTCTTG
GTGGTGGCGACCCGGGTGCGGGTGAACGAGTTCAACCACGATGAGCTGGC
GTGTGACGTCGCGCGCGATTTTCGCGTGGCGTACCGCGACGTGGAGGCGC
TGTACGGGCGGGCGGCGATGCGCCGCATTCCGCTTTTCGGGGTGGGCCAC
TCTCTGGGCGCCAAAGTGCACGTGCTGCTGAACTGCTACCCGGAGGTGGT
GGACGTGGCGAAGCGGAGAAAGGCAAACGTTATAATTAGCTTCAACAACT
TCCCGGCAAAGGACAGCGTGCCGTTCATCAACGAGCTGCGAGAGCTCGGG
GTGTCGATGGGAGACTTGGGGCCGCTGGGCGACAACCTATCGGGGATCGC
CAAAGCGCAAACGTTATAATTAGCTTCAACAACTTCCCGGCAAAGGACAG
CGTGCCGTTCATCAACGAGCTGCGAGAGCTCGGGGTGTCGATGGGAGACT
TGGGGCCGCTGGGCGACAACCTATCGGGGATCGCCAAAGCGGTTGCCGGA
CTCCCCCTTGTGAGCGGGTTCGCGACGCAAGGGCTGTCCTTGGCGGAAGA
GTGGGCACCAAAGGCGGCCGCTGTGGTCGGGTCTGCGTTGTCGGACGTTC
CCCAGGAGTTCAAGCCCTCCCCGCAGGGTTGCCGGACTCCCCCTTGTGAG
CGGGTTCGCGACGCAAGGGCTGTCCTTGGCGGAAGAGTGGGCACCAAAGG
CGGCCGCTGTGGTCGGGTCTGCGTTGTCGGACGTTCCCCAGGAGTTCAAG
CCCTCCCCGCAGGCTACCTGGGACTTGGTGACGGACCGGTACTCGGTTCG
CAACAACCTCGTGCTGCAGTTCAAGCGCGACACCATCGACCAGAGCCCGC
AGCTGGCGGAGACACTCTTTAATCGCTTCGGCAGGGACGGGGAGCTAGAA
TTTTCGAGGCAAGTTCAGGTTTCTTCGCTGGCGAAGGGCAGAGGGGTGCT
ACCTGGGACTTGGTGACGGACCGGTACTCGGTTCGCAACAACCTCGTGCT
GCAGTTCAAGCGCGACACCATCGACCAGAGCCCGCAGCTGGCGGAGACAC
TCTTTAATCGCTTCGGCAGGGACGGGGAGCTAGAATTTTCGAGGCAAGTT
CAGGTTTCTTCGCTGGCGAAGGGCAGAGGGGTGCTGGACGGCACGCACGT
TACCCCCAATACACCGGACTTCCGAGACACGCGGCAAGCGCGGGACTGGG
CGAGTAAAGCCGGAATGGGTGCCCAAGGCGATGCTTTCGTAGAGGCTGGA
CGGCACGCACGTTACCCCCAATACACCGGACTTCCGAGACACGCGGCAAG
CGCGGGACTGGGCGAGTAAAGCCGGAATGGGTGCCCAAGGCGATGCTTTC
GTAGAGGGAGGGGCGAGAGTGGCGGCTTCGACCGCAAGCCTTGAGCTGAA
CGAGCTCATTAACGCCCTCACGTCCTACCTTCGATCTCAGTCCCTGTGGG
TGCGACGAGAGGGTCGGTGGGACAACGACGAGATGTAGGGAGGGGCGAGA
GTGGCGGCTTCGACCGCAAGCCTTGAGCTGAACGAGCTCATTAACGCCCT
CACGTCCTACCTTCGATCTCAGTCCCTGTGGGTGCGACGAGAGGGTCGGT
GGGACAACGACGAGATGTAG
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