mRNA_C-linearis_contig79.15431.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15431.1
Unique NamemRNA_C-linearis_contig79.15431.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig79.15431.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.510e-32
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = -2 
Query:    3 YQALPVFTSTLRSLGNFKSVFTESGVVSRIPGITIPRAFKMRRQGLHQVAVGMKEYMHHDDFSGMTGDGVFTGEPHALFVNGIPSVEEAAPFLLKEIDDDTRRRV 317
            Y+ LPV T+TLR+LGNFK VF    VV  I GIT  RAF++ + G  QV VGMKEYMHH+ ++G+TGDGVF GEPH LFV G+P   +A PF LK+ID  T  ++
Sbjct:   20 YKTLPVHTTTLRNLGNFKGVFPPGPVVRNIHGITKSRAFQLLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHDLFVGGVPDPADAPPFQLKDIDKATLDKI 124
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BLAST of mRNA_C-linearis_contig79.15431.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.890e-17
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -2 
Query:   15 ITIPRAFKMRRQGLHQVAVGMKEYMHHDDFSGMTGDGVFTGEPHALFVNGIPSVEEAAPFLLKEIDDDT 221
            +T  RAF++ + G  QV VGMKE+MHH+ + GMTGDGVF G+PH +FV GIP   +A PF LK ++ DT
Sbjct:    1 MTKARAFQLLKDGPTQVTVGMKEFMHHEVYRGMTGDGVFAGKPHEVFVGGIPDAADAPPFELKAVEQDT 69
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BLAST of mRNA_C-linearis_contig79.15431.1 vs. uniprot
Match: A0A6H5KUF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.340e-13
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = -2 
Query:    3 MKEYMHHDDFSGMTGDGVFTGEPHALFVNGIPSVEEAAPFLLKEIDDDTRRRV 161
            MKEYMHH+ ++G+TGDGVF GEPH LFV G+P   +A  F LK+ID  T  ++
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPLFQLKDIDKATLDKI 53
[Close]
BLAST of mRNA_C-linearis_contig79.15431.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.460e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = -2 
Query:    3 MKEYMHHDDFSGMTGDGVFTGEPHALFVNGIPSVEEAAPFLLKEIDDDTRRRV 161
            MKEYMHH+ ++G+TGDGVF GEPH LFV G+P   +A PF LK+ID  T  ++
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPPFQLKDIDKATLDKI 53
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE5.510e-3257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI1.890e-1755.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF7_9PHAE1.340e-1356.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE3.460e-1358.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:662449..662766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.8020096-CDS-C-linearis_contig79:662448..6627661622930487.8020096-CDS-C-linearis_contig79:662448..662766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 662449..662766 +
1690881095.0823243-CDS-C-linearis_contig79:662448..6627661690881095.0823243-CDS-C-linearis_contig79:662448..662766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 662449..662766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15431.1prot_C-linearis_contig79.15431.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 662449..662766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15431.1

>prot_C-linearis_contig79.15431.1 ID=prot_C-linearis_contig79.15431.1|Name=mRNA_C-linearis_contig79.15431.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
RTLLLVSSSISFSKNGAASSTEGMPLTNKAWGSPVKTPSPVMPEKSSWCM
YSFMPTATWCNPCLRILKARGIVMPGIRDTTPLSVKTLLKLPRLRRVLVK
TGRAW*
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mRNA from alignment at C-linearis_contig79:662449..662766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15431.1 ID=mRNA_C-linearis_contig79.15431.1|Name=mRNA_C-linearis_contig79.15431.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at C-linearis_contig79:662449..662766+ (Chordaria linearis ClinC8C monoicous)
CGAACTCTTCTCCTGGTGTCGTCGTCGATCTCCTTCAGCAAGAACGGTGC
GGCCTCTTCCACGGAGGGAATGCCGTTGACGAACAAGGCGTGGGGCTCAC
CAGTAAAAACCCCGTCTCCGGTCATGCCCGAGAAATCGTCGTGGTGCATG
TACTCCTTCATGCCGACAGCTACCTGGTGCAACCCCTGCCTGCGCATCTT
GAAGGCTCGCGGAATCGTGATGCCAGGGATTCGGGACACAACCCCGCTCT
CTGTGAAGACGCTCTTGAAGTTACCCAGGCTGCGGAGGGTGCTTGTGAAG
ACAGGCAGAGCCTGGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig79:662449..662766+

>mRNA_C-linearis_contig79.15431.1 ID=mRNA_C-linearis_contig79.15431.1|Name=mRNA_C-linearis_contig79.15431.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig79:662449..662766+ (Chordaria linearis ClinC8C monoicous)
CGAACTCTTCTCCTGGTGTCGTCGTCGATCTCCTTCAGCAAGAACGGTGC
GGCCTCTTCCACGGAGGGAATGCCGTTGACGAACAAGGCGTGGGGCTCAC
CAGTAAAAACCCCGTCTCCGGTCATGCCCGAGAAATCGTCGTGGTGCATG
TACTCCTTCATGCCGACAGCTACCTGGTGCAACCCCTGCCTGCGCATCTT
GAAGGCTCGCGGAATCGTGATGCCAGGGATTCGGGACACAACCCCGCTCT
CTGTGAAGACGCTCTTGAAGTTACCCAGGCTGCGGAGGGTGCTTGTGAAG
ACAGGCAGAGCCTGGTAGCGAACTCTTCTCCTGGTGTCGTCGTCGATCTC
CTTCAGCAAGAACGGTGCGGCCTCTTCCACGGAGGGAATGCCGTTGACGA
ACAAGGCGTGGGGCTCACCAGTAAAAACCCCGTCTCCGGTCATGCCCGAG
AAATCGTCGTGGTGCATGTACTCCTTCATGCCGACAGCTACCTGGTGCAA
CCCCTGCCTGCGCATCTTGAAGGCTCGCGGAATCGTGATGCCAGGGATTC
GGGACACAACCCCGCTCTCTGTGAAGACGCTCTTGAAGTTACCCAGGCTG
CGGAGGGTGCTTGTGAAGACAGGCAGAGCCTGGTAG
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