mRNA_C-linearis_contig79.15429.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig79.15429.1
Unique NamemRNA_C-linearis_contig79.15429.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:650527..653806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15429.1prot_C-linearis_contig79.15429.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig79 653435..653806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.624687-UTR-C-linearis_contig79:650526..6507091622930487.624687-UTR-C-linearis_contig79:650526..650709Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 650527..650709 +
1690881095.0302083-UTR-C-linearis_contig79:650526..6507091690881095.0302083-UTR-C-linearis_contig79:650526..650709Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 650527..650709 +
1622930487.657328-UTR-C-linearis_contig79:653400..6534341622930487.657328-UTR-C-linearis_contig79:653400..653434Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 653401..653434 +
1690881095.0419807-UTR-C-linearis_contig79:653400..6534341690881095.0419807-UTR-C-linearis_contig79:653400..653434Chordaria linearis ClinC8C monoicousUTRC-linearis_contig79 653401..653434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930487.680099-CDS-C-linearis_contig79:653434..6538061622930487.680099-CDS-C-linearis_contig79:653434..653806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 653435..653806 +
1690881095.057393-CDS-C-linearis_contig79:653434..6538061690881095.057393-CDS-C-linearis_contig79:653434..653806Chordaria linearis ClinC8C monoicousCDSC-linearis_contig79 653435..653806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig79.15429.1

>prot_C-linearis_contig79.15429.1 ID=prot_C-linearis_contig79.15429.1|Name=mRNA_C-linearis_contig79.15429.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
MSLRTPPAEETSKAAAAAAAAAAPEHPLPTTNGAGGAAATAEHVLSIASG
GSGGGGGGGGVGVGRGTSIGAGAGAAGGSAMRSEGLLLAPDVVAAAASSA
SVFPPLMGQWPAPNLPYGNSWREG
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mRNA from alignment at C-linearis_contig79:650527..653806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig79.15429.1 ID=mRNA_C-linearis_contig79.15429.1|Name=mRNA_C-linearis_contig79.15429.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3280bp|location=Sequence derived from alignment at C-linearis_contig79:650527..653806+ (Chordaria linearis ClinC8C monoicous)
TTAAAACTTAAACTACACGTTTGTTTGGTGATTGTTGTTCGCACAGGCAA
GCGCGCACGCCATCGGGCGAATGTAGGTGCGCGTGCGGAGCTTGGAGAAG
AAAGTCTCAAGAATCAAGGGGCAGGAAGACCGCGAGGCAACGACCGAGCA
CGAGAGGAGAGAGACAGACCAAGAGAAAGACGGGTGGGTGGTGTGGAGTG
CGGGTATCGAACGCATCAACTTTTCATATCTTGGAAGTTATGAATACGAG
ATGAGAGACTGTCCGACTCCACAAACACCTGCATCGATGGACAGAACTCT
CTGTCGTGCTCCTTGTTTGGGCGTTCAGTGTCGCTCTTCCCATCCATGGC
AACTCTGCTGAACACACACACACACGGGTCTTGAGGGGCGTTGTGAAGGC
AGCCATTTTCACGGATCCGAAAGAAAGTCGTTGCTCGTCAACTATCAATA
ACTGCCTCTTGGTTTTTGGATCGGCGGTGCTGCGAGTTGCAGATCGCGGT
GTAGCGTCAGCAGCAGCAATGCTCGCGCAGGGCGCCTACCCGAGAACGCT
CTCAATGCCCATAGTTCTAGCGTGCAGGTGCGGAAGCAAACACATGCCGT
GCTTCTCGCTGCGATCTTTGTTCAAAGCAAAACAATATGTATGTATGCGG
GAAACCTTCGGCCTTGTCTACGTGTTGTGCGTAGTCATAACTCCTCCAAT
AGCGTGGTACCTGATTTTTCTGGTGTTTTCCAACACATTTTACCCGTATT
TTCTTCCGAGTGCAGTATGTACTGCTGTGTACCCTATTTGTCTGATTTAG
CGCCAGCGAGACGCGAGACCCCTCGGGGCCCAGTTTAGTATCGCAAGGCG
AATATGTACCATATTTTTGCTCAGTTTCTTTGCGGCGTCGAGTGTTGCCC
AGTTTTGTGACCACGGGCTTCCATTGATATTTTGGAATAGAGAGCTAAAT
TTGAGAAACAAACAAAAAAATGTGGGAGCACCCGCGCCGCCCAACCCCCA
AAAAGAGAGAATACAATGTTGACCTTGGGATGGGTGTTTACTGCCCCATC
TCTCGGACGATGTCATTTCGGTCTTCGCTTCGCGGACAGCCAGGAAGAAG
CAGGAAAAATCAAATTAGGGCGAAGGTACACCTCGCATTTGAATTTTTAT
TTGATCTTCAATTCGCGTCTTGGAATTTGGCGCACACTTTGTCCAGCATA
TATATCTACATACAGCAGCAGCAACGTAGGTACGAAATATGATCGGCCAT
GGGGTTTGGGGTTAGGCGTGGAAACATGGATCGGTCAGGGAAATGAAAGA
GAACAACAACAACTGCGATGGCCATCCTTCCCCCACCAGATGGCCAAGTC
TAGACTCTTTGTCCCATATGAGAAGTAGACACGGAACCTCGCTCACGGCA
GCAATCGATCACTTTCGTGGTATTGTCTGCACGTCTACTTGTGGTCCTGA
GCCATGCATTGTATAGACTATGTCTGGGATCTTGGGTCAAATATAACGCT
TGTTCTCTCACGGTGTATCTAGTACTACTACCACTAGCAGCAGGTGAGAC
CCATCCGGCCAAGTCCCCCCTTGCTGTCTACTCCCGAAAAAGCTCCAAAG
CGCGCCATCTTTTTTGTTGCTCGTACGACACACACACACACGTGGCACGC
GTTTCATCCACCCATGCTCACTACAGGCCAACACCTCGCCACATTTACGA
CCACGGAATCGTGTCCACACACCTACCGGAATCGTGTCAGAGTACAGAGT
ACATACCTCATTCGGGCTGACACATGAGGTTCATCTGTAGCCGTACTACT
GCAGCAGTTACTCGCTGTTTTTCGAGAATTTAGGTTGCTTCATCAACGAG
TAAGGTCGTTAATCTACCATGTATGTACGTACTTGATACGAGTTTTATGA
GATTGAGTTGTGCCGCTCGAACTCTCCCTACTACACCTTCAAGCCTTCCA
GCGTTCATCCGTATGTAGGAGCTGACAGCAGTGTTGGCTCATCTTGGATT
GCTTGACCTGTCCGAGTTGAAGGATCTGGCGCACGTACGTGTCTGCGATC
TTCAGGTTGAGCTCTCCTACATACATACGAACGTACATTCCTCTCGGCAC
ACGTTTCAGTACTTCTTGTCACTTTCATACCTTAATCGATGCTCATCTTC
GGGCAAGCAACTGATCCGATCCGTATTCATGAATCGACAGATCCGTAGGG
CCTCTTTCAGGCATAGTCGATGGTCTCCGTTCTTGTGTGGTCTAGATCTC
ATGCGCCCAATAGTTTGAGCGGCCCCAAAAGGAAGATACAGACTAAGAAC
TCATCTGATAAAGTATGTACTTCGTCATGATATGTACCTTGACCCACAAT
AATACTACCAATCGCTCATCTTTGCGTGTTGCTTCCGCATGGAAACATAG
AACTTTTTCAACCGCCCCCAAAATGACGTATCCGATGATCTAGTTGACGC
ACAAGATCCCCCACCCGGCTGTTATGGCGTGCAGATGGCTCGGGAACAGC
CTGCAACGCGGATACGCGCTGGCCTACGCCGTTGAGATAGCTCGCAAATT
ATGTTTCCCGATCGAGCGGGGGACAGCAGCAGCAGTAGTAGCCGGGGAGC
GTCGACCGGGAGCTTTCCTTCCCCGCCTTGTATTCCCTTCCGCATTTGAG
TGGTAGACCCTCTCGCAACGAATCGTGGCAATCGATGCCACGAAGCAACC
AGCGTGGTGGCTGCTAATCGTCCATGCAACTCTTACTCTTTCATACCGGT
AGCAGCTTCTATTCTTTCATACCGGTACGGTAGCAGCTTCTACTCTTTCT
TTGGAAAACCCACCACCGCTTGTGAATATACTAATATACTTCGAAGTATA
CTAATATACTGACTGTGTGCGCAGGAGCAGCACAAATACGACGCACTCTT
CAATCAGCATGTCCTTGCGGACGCCGCCGGCGGAAGAGACCAGCAAAGCG
GCGGCAGCGGCAGCAGCGGCGGCGGCACCAGAGCATCCCCTTCCCACAAC
AAACGGCGCCGGCGGCGCAGCGGCAACCGCAGAGCATGTCCTTAGCATCG
CTAGCGGGGGCAGTGGCGGTGGCGGTGGTGGCGGTGGGGTAGGAGTAGGA
AGGGGTACTTCCATAGGTGCTGGTGCTGGTGCTGCTGGGGGCTCCGCAAT
GCGCTCGGAAGGGCTTCTTTTAGCACCCGACGTCGTCGCGGCGGCGGCGT
CTTCGGCCTCGGTTTTTCCGCCGCTAATGGGGCAGTGGCCGGCACCGAAC
TTGCCGTACGGGAATAGCTGGCGAGAGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig79:650527..653806+

>mRNA_C-linearis_contig79.15429.1 ID=mRNA_C-linearis_contig79.15429.1|Name=mRNA_C-linearis_contig79.15429.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig79:650527..653806+ (Chordaria linearis ClinC8C monoicous)
ATGTCCTTGCGGACGCCGCCGGCGGAAGAGACCAGCAAAGCGGCGGCAGC
GGCAGCAGCGGCGGCGGCACCAGAGCATCCCCTTCCCACAACAAACGGCG
CCGGCGGCGCAGCGGCAACCGCAGAGCATGTCCTTAGCATCGCTAGCGGG
GGCAGTGGCGGTGGCGGTGGTGGCGGTGGGGTAGGAGTAGGAAGGGGTAC
TTCCATAGGTGCTGGTGCTGGTGCTGCTGGGGGCTCCGCAATGCGCTCGG
AAGGGCTTCTTTTAGCACCCGACGTCGTCGCGGCGGCGGCGTCTTCGGCC
TCGGTTTTTCCGCCGCTAATGGGGCAGTGGCCGGCACCGAACTTGCCGTA
CGGGAATAGCTGGCGAGAGGGGATGTCCTTGCGGACGCCGCCGGCGGAAG
AGACCAGCAAAGCGGCGGCAGCGGCAGCAGCGGCGGCGGCACCAGAGCAT
CCCCTTCCCACAACAAACGGCGCCGGCGGCGCAGCGGCAACCGCAGAGCA
TGTCCTTAGCATCGCTAGCGGGGGCAGTGGCGGTGGCGGTGGTGGCGGTG
GGGTAGGAGTAGGAAGGGGTACTTCCATAGGTGCTGGTGCTGGTGCTGCT
GGGGGCTCCGCAATGCGCTCGGAAGGGCTTCTTTTAGCACCCGACGTCGT
CGCGGCGGCGGCGTCTTCGGCCTCGGTTTTTCCGCCGCTAATGGGGCAGT
GGCCGGCACCGAACTTGCCGTACGGGAATAGCTGGCGAGAGGGG
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