mRNA_C-linearis_contig77.15333.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig77.15333.1
Unique NamemRNA_C-linearis_contig77.15333.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.050e-25
Identity = 50/68 (73.53%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLG-RRLHQSSQTMAEWILGDPTATNPAECAEYVA 201
            MAP + VS VNLPGACRSFGFEKYWERK+ EY Q G RRL    Q M +WILGDPTATN AEC EYVA
Sbjct:  168 MAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVA 235
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.080e-25
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQS--SQTMAEWILGDPTATNPAECAEYV 198
            + PGV +SAVNLPGACRSFGFEKYWERK+ EY   GRRL+     Q M++WILGDPTATN AEC EYV
Sbjct:  251 LGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYV 318
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.810e-24
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    7 PGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQ--TMAEWILGDPTATNPAECAEYVAHA 207
            P V +SAVNLPGACRSFGFE+YWERK+ EY + GRRL  S+Q   M++WILGDPTATN AEC EYV  A
Sbjct:  111 PQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSDWILGDPTATNMAECTEYVVEA 179
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.220e-23
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWILGDPTATNPAECAEYVA 201
            +AP V VSAVN+PGACRSFGFEKYWERK+ EY Q G R   + Q+M EWILGDPTATN  EC EYVA
Sbjct:  710 LAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRGLLTEQSMGEWILGDPTATNVEECTEYVA 776
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.280e-23
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWILGDPTATNPAECAEYVA 201
            +A  V VSAVN+PGACRSFGFEKYWERK+ EY Q G R     Q+M EWILGDPTATN AEC EYVA
Sbjct:  892 LASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRRLSVQQSMGEWILGDPTATNMAECTEYVA 958
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.060e-22
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   10 GVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWILGDPTATNPAECAEYVAHA 207
            GV +SAVNLPGACRSFGFEKYWE K+ EY   GR+L  +  +M EWILGDPTATN  EC EYVA A
Sbjct:  135 GVEISAVNLPGACRSFGFEKYWEHKKLEYATGGRQLR-TQPSMGEWILGDPTATNMDECVEYVARA 199
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.350e-20
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWILGDPTATNPAECAEYVAHA 207
            +A GV V+AVNLPG CRSFGFE YWERK+ E  + GR L    Q+M +W+LGDPTATN  EC EYVA A
Sbjct:  201 LADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHL--GEQSMGDWLLGDPTATNMDECMEYVAQA 267
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BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.370e-20
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   13 VTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWILGDPTATNPAECAEYVAHA 207
            V VSA NLPGACRSFGFEKYWERK+ E  + GR L  ++ +M EWILGDPTATN  EC EYVA A
Sbjct:  433 VEVSAANLPGACRSFGFEKYWERKKLENARAGRLLR-TTPSMGEWILGDPTATNMNECVEYVARA 496
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig77.15333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KRS2_9PHAE8.050e-2573.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE9.080e-2570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE1.810e-2469.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRC1_9PHAE1.220e-2371.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE2.280e-2371.64LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5L5Y7_9PHAE6.060e-2269.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE5.350e-2063.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF3_9PHAE5.370e-2069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig77contigC-linearis_contig77:865120..865834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size210
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig77.15333.1prot_C-linearis_contig77.15333.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig77 865120..865834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.856931-CDS-C-linearis_contig77:865119..8651691622930476.856931-CDS-C-linearis_contig77:865119..865169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865120..865169 +
1690881089.543721-CDS-C-linearis_contig77:865119..8651691690881089.543721-CDS-C-linearis_contig77:865119..865169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865120..865169 +
1622930476.9036543-CDS-C-linearis_contig77:865494..8656001622930476.9036543-CDS-C-linearis_contig77:865494..865600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865495..865600 +
1690881089.5573041-CDS-C-linearis_contig77:865494..8656001690881089.5573041-CDS-C-linearis_contig77:865494..865600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865495..865600 +
1622930476.9192884-CDS-C-linearis_contig77:865780..8658341622930476.9192884-CDS-C-linearis_contig77:865780..865834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865781..865834 +
1690881089.5718558-CDS-C-linearis_contig77:865780..8658341690881089.5718558-CDS-C-linearis_contig77:865780..865834Chordaria linearis ClinC8C monoicousCDSC-linearis_contig77 865781..865834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig77.15333.1

>prot_C-linearis_contig77.15333.1 ID=prot_C-linearis_contig77.15333.1|Name=mRNA_C-linearis_contig77.15333.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=70bp
MAPGVTVSAVNLPGACRSFGFEKYWERKQGEYTQLGRRLHQSSQTMAEWI
LGDPTATNPAECAEYVAHAM
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mRNA from alignment at C-linearis_contig77:865120..865834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig77.15333.1 ID=mRNA_C-linearis_contig77.15333.1|Name=mRNA_C-linearis_contig77.15333.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=715bp|location=Sequence derived from alignment at C-linearis_contig77:865120..865834+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCAGGCGTGACTGTCTCGGCCGTCAACCTTCCCGGCGCTTGCAG
GTATGTCCAATGTATTCATCCCACTGGCGACCGCCTTATTGTGTCTTTCT
CATGGGGCGAGCTTCGTGGCAGCACCGTTGCAAGGCGATGGTGGCGCTCG
AAGCACTCCGAACCGTTGCCATGCGTCTTCGAAAGCACCTCCGGCGACAG
CTTCACCGACACCCGCTTGCTTTTGCTTGTGTTGCCGGGGAGGATGCGAC
TTTCCTCTATGTTCAGTGTTCCGTTGGTCGGCCTAAATATCCCGCGTCTC
TCCGCCATAACCTGCAAAAACTGATAAACCCGCCCGCCGCCCGATTGATC
ATCGACTCCACGCGCGCCGAAAAAGGTCGTTCGGTTTCGAGAAGTATTGG
GAGCGCAAGCAGGGGGAGTACACGCAGCTCGGTCGGAGGCTTCACCAGTC
TTCGCAGACCATGGCGGAGTGGATCCTCGGGGTAAGTTGGCTCCGCCGTA
GTTAGTTTCGTGGGGGGGTCGGGGGTTCGGTAGATGTTTCAGTGGGCATG
TGTCTTGCTTGGTGCTTGCACAGCAGAGAGAACTAGTCCATCCTCAAGAA
ACAAATCGCGAAAAATCAACCGCCGCTTCGTTTAATATTTGCCGTTTTGA
ACAAAACCCAGGACCCGACGGCGACCAACCCCGCCGAATGCGCCGAGTAC
GTCGCTCACGCCATG
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Coding sequence (CDS) from alignment at C-linearis_contig77:865120..865834+

>mRNA_C-linearis_contig77.15333.1 ID=mRNA_C-linearis_contig77.15333.1|Name=mRNA_C-linearis_contig77.15333.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at C-linearis_contig77:865120..865834+ (Chordaria linearis ClinC8C monoicous)
ATGGCACCAGGCGTGACTGTCTCGGCCGTCAACCTTCCCGGCGCTTGCAG
ATGGCACCAGGCGTGACTGTCTCGGCCGTCAACCTTCCCGGCGCTTGCAG
GTCGTTCGGTTTCGAGAAGTATTGGGAGCGCAAGCAGGGGGAGTACACGC
AGCTCGGTCGGAGGCTTCACCAGTCTTCGCAGACCATGGCGGAGTGGATC
CTCGGGGTCGTTCGGTTTCGAGAAGTATTGGGAGCGCAAGCAGGGGGAGT
ACACGCAGCTCGGTCGGAGGCTTCACCAGTCTTCGCAGACCATGGCGGAG
TGGATCCTCGGGGACCCGACGGCGACCAACCCCGCCGAATGCGCCGAGTA
CGTCGCTCACGCCATGGACCCGACGGCGACCAACCCCGCCGAATGCGCCG
AGTACGTCGCTCACGCCATG
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