mRNA_C-linearis_contig76.15239.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI) HSP 1 Score: 350 bits (899), Expect = 3.560e-117 Identity = 176/188 (93.62%), Postives = 179/188 (95.21%), Query Frame = 3
Query: 381 YAAGRGAG-GTPHGLLPEYNSIVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVTDGRSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESVLQEMNLQP 941
YA RG G G P+GLLPEYNSIVGAWVLEVSRSETMEGYLRCM VADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINH TQIYELDKEK+TDGRSGPKHCMVSL NP CLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNL+TGARCVTKRTWVRVAVTPVDQESVLQEMNLQP
Sbjct: 3 YAVSRGGGTGGPNGLLPEYNSIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLPNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESVLQEMNLQP 190
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE) HSP 1 Score: 284 bits (727), Expect = 7.480e-92 Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 3
Query: 504 MKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVTDGRSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESVLQEMNLQP 941
M VADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINH TQIYELDKEK+TDGRSGPKHCMVSLRNP CLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNL+TGARCVTKRTWVRVAVTP+DQESVLQEMNLQP
Sbjct: 1 MNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKITDGRSGPKHCMVSLRNPGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPLDQESVLQEMNLQP 146
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: A0A835ZG67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG67_9STRA) HSP 1 Score: 186 bits (472), Expect = 5.050e-53 Identity = 94/177 (53.11%), Postives = 125/177 (70.62%), Query Frame = 3
Query: 396 GAGGTPHGLLPEYNSIVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVTDGRSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESVLQE 926
G G HG E+ S+ G+WVL+ SRS+ ME YL+C+ VA+LAIEAQ K E D ESRNV I+GT+ IHKRTKIN LT+ +EL KE+ RSG + MV+LR P + +TT+MP + G +HL+ETR L+DKGH QELHL+NL+TGA+C+T+R WVRV T D+ ++ +E
Sbjct: 3 GGSGLLHG---EFTSLTGSWVLDKSRSDVMEPYLQCLNVAELAIEAQAKCEADSESRNVINIDGTQFAIHKRTKINALTEHFELGKEREMPARSGTRKTMVTLRKPGDYSAIDVTTAMPISTGALHLLETRTLMDKGHTCLQELHLTNLATGAKCLTRRVWVRVPTTHEDRAALEEE 176
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: D7FJD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD1_ECTSI) HSP 1 Score: 150 bits (380), Expect = 4.750e-40 Identity = 74/150 (49.33%), Postives = 100/150 (66.67%), Query Frame = 3
Query: 435 NSIVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVTDGRSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVR 884
+S+ GAWVL+V RS+T+E YLRCM D +EAQ+ EQ SRNV ++ ++LV+HK T +N+LT+ YELD+E+VT G K + SL P D L + T++PT LVETR+L+ G H QEL L NL TGA+ +T+RTWVR
Sbjct: 4 SSLTGAWVLDVYRSDTLEAYLRCMGAPDRVVEAQLAGEQACPSRNVLVLDDSRLVVHKHTSVNNLTESYELDQERVTPSTYGEKRAIASLLQPGRHDALAIKTALPTDTSDFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVR 153
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.520e-24 Identity = 62/165 (37.58%), Postives = 101/165 (61.21%), Query Frame = 3
Query: 435 NSIVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVT-DGRSGPKHC-MVSLRN--PECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESV 917
NSIVGAWVL++SRS+TME +L+ +V++ A ++AE H + NV +EG + IH+RT N+ T+ ++LD+EKV DG + +VS+ + P +T++ + +H++E+R +++ H QE+ L NL+TG CVT R W RV +T Q ++
Sbjct: 10 NSIVGAWVLDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATI 174
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.040e-19 Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 3
Query: 432 YNSIVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQ-IYELDKEKVTDGRSGPKHCMVSLRNPECLD--GLVLTTSMPTAQGQ--MHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESV 917
++SIVGAWVL++SRS+TME +LR + + I + AE H NV + + IHKRT N T+ Y LD+EKV L P C G V + + TA G+ +H++ETR +++ G H QE+ L NL+TG CVT R W+RV +T Q ++
Sbjct: 115 HHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVP-CSGPTGFVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAAL 280
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.810e-14 Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 3
Query: 534 QMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVT-DG----RSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVAVTPVDQESVLQEMNLQP*EPRAS 959
Q++AE H + NV +EG + IHKRT N+ T+ ++L +EKV DG R M S R P +T++ + +H++E+R +++ G H QE+ L NL+TG CVT R W RV +T D+ + + L EP +S
Sbjct: 3 QVRAEARHGAFNVIHLEGDTITIHKRTCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSR-PTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMT--DEHQAMMGLLLLAEEPSSS 146
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Match: A0A7S2FFR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFR3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.790e-11 Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 3
Query: 441 IVGAWVLEVSRSETMEGYLRCMKVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHLTQIYELDKEKVTDGRSGPKHCMVSLRNPECLDGLVLTTSMPTAQGQM-HLVETRQLLDKGHVHAQELHLSNLSTGARCVTKRTWVRVA 890
++G+W+L+ RSE+M YLR M ++++AIEA KAE++ ++ + T I KRT++ + T+ + +E VT+ + K+ V L E LV+TT +P G + + +TR + G + Q +N S V R + + A
Sbjct: 21 LMGSWILDKGRSESMVPYLRLMGLSEMAIEAWTKAEKETDTLHTITTTATGCTIAKRTRVQNTTEEFVFGQEVVTESKVAGKNKKV-LMTSEHPGHLVITTELPLKNGAVINSTDTRDSEENGEIMHQTWAAANKSINKEVVIHRYYTKTA 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig76.15239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig76.15239.1 >prot_C-linearis_contig76.15239.1 ID=prot_C-linearis_contig76.15239.1|Name=mRNA_C-linearis_contig76.15239.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=191bp MSGYAAGRGAGGTPHGLLPEYNSIVGAWVLEVSRSETMEGYLRCMKVADLback to top mRNA from alignment at C-linearis_contig76:859803..864087- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig76.15239.1 ID=mRNA_C-linearis_contig76.15239.1|Name=mRNA_C-linearis_contig76.15239.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4285bp|location=Sequence derived from alignment at C-linearis_contig76:859803..864087- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig76:859803..864087- >mRNA_C-linearis_contig76.15239.1 ID=mRNA_C-linearis_contig76.15239.1|Name=mRNA_C-linearis_contig76.15239.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at C-linearis_contig76:859803..864087- (Chordaria linearis ClinC8C monoicous)back to top |