prot_C-linearis_contig74.15049.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig74.15049.1
Unique Nameprot_C-linearis_contig74.15049.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length465
Homology
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BLAST of mRNA_C-linearis_contig74.15049.1 vs. uniprot
Match: D8LD29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD29_ECTSI)

HSP 1 Score: 496 bits (1277), Expect = 7.530e-171
Identity = 324/417 (77.70%), Postives = 351/417 (84.17%), Query Frame = 0 
Query:   47 GAMATASPGDKAQRIKEQATALHRAGEYDEAAREFARAAELLEAAGGALAPPPALSAIRLSLAAAQLKCGDLRGAEATCSQLLRTPGLPRALRQKASYRRGMSRKRQAEAAGAGLAGFRLAQKAYRDAYLSVELSTSQGGGAAGPAEGDAKAVELMAEMEQGDWGQGRLTEADRIAARSKADKHLTSLASVTPPARG-PTPGGGIFDMLGAGGAXXXXXXXXXXXXXXXXXXXXXXXXMPGLMDMMAAGMGXXXXXXXXXXXXXXXLMSMLMXXXVAGENGGLGLGGAADGQDPKQLLKMAKKMSKVVKKQLRNPGTQQLVCSFLKQAEPETLISLVGAAGFPNANEAMVGWVSSYLKNADGKTLESWIDYGEIAAGVYRRLSQLFVLWSRGIALAGIWLLWVWIKACFAPIVVKAA 462
            G +A ASPGD+A+RIKE+ATALHRAG+Y+EAA EFARAA+LLE AG  LAPPPALSAIRLSLAA+QLK GDLRGAEATCSQLL+TPGLPR LRQKASYRRGMSRKRQAEAAGAG AG RLAQ+AYRDAYLSVELS    GGAAGPA GDAKA+ LMAEME GDWGQG LTEADR AARSKADKHLT+LAS+ PPAR  P   GG+FDM G G   XXXXXXXXXXX XXXXXXXX XX PGLMDMM AG GXXXXXXXXXXXXXXX    LM XX A      GLGG ADG DPKQ+LKMAKKMSK VKKQLRNPGTQQ+VC+FL QA+PETL+SL   AGFP ANEA+V  +S YL+ ADGKTLESWIDYGEIA   +RRL Q  VLWSRGIALAGIWL+WVW++ACFAPIVV+ A
Sbjct:   34 GGVAMASPGDQARRIKEEATALHRAGQYEEAAEEFARAAQLLEEAGVGLAPPPALSAIRLSLAASQLKSGDLRGAEATCSQLLKTPGLPRPLRQKASYRRGMSRKRQAEAAGAGAAGSRLAQRAYRDAYLSVELSND--GGAAGPAAGDAKALGLMAEMEAGDWGQGWLTEADRSAARSKADKHLTALASMAPPARSTPAGSGGLFDMFGGG---XXXXXXXXXXXGXXXXXXXXLXXXPGLMDMMGAGTGXXXXXXXXXXXXXXXX---LMGXXXAKS----GLGGGADGPDPKQMLKMAKKMSKGVKKQLRNPGTQQMVCAFLNQAKPETLMSLATTAGFPGANEAIVNGLSGYLQKADGKTLESWIDYGEIATCAFRRLKQFSVLWSRGIALAGIWLVWVWVRACFAPIVVQKA 438
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD29_ECTSI7.530e-17177.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 48..181
e-value: 5.2E-9
score: 37.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 55..156
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 451..464
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 431..450
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..430
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 7.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.737
NoneNo IPR availableTMHMMTMhelixcoord: 437..459

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:710637..714703 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15049.1mRNA_C-linearis_contig74.15049.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig74 710602..715264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig74.15049.1 ID=prot_C-linearis_contig74.15049.1|Name=mRNA_C-linearis_contig74.15049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=465bp
MVQKRRHRSILAVAALVACLCCGKAAGEAGSMGSFDATALRGKDSRGAMA
TASPGDKAQRIKEQATALHRAGEYDEAAREFARAAELLEAAGGALAPPPA
LSAIRLSLAAAQLKCGDLRGAEATCSQLLRTPGLPRALRQKASYRRGMSR
KRQAEAAGAGLAGFRLAQKAYRDAYLSVELSTSQGGGAAGPAEGDAKAVE
LMAEMEQGDWGQGRLTEADRIAARSKADKHLTSLASVTPPARGPTPGGGI
FDMLGAGGAGGPGAGFPGLGGATGGAGAMGGGGMPGLMDMMAAGMGGGGG
AGGGGAEGGGGLMSMLMGGGVAGENGGLGLGGAADGQDPKQLLKMAKKMS
KVVKKQLRNPGTQQLVCSFLKQAEPETLISLVGAAGFPNANEAMVGWVSS
YLKNADGKTLESWIDYGEIAAGVYRRLSQLFVLWSRGIALAGIWLLWVWI
KACFAPIVVKAAAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf