mRNA_C-linearis_contig74.15049.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig74.15049.1 vs. uniprot
Match: D8LD29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD29_ECTSI) HSP 1 Score: 498 bits (1281), Expect = 1.860e-168 Identity = 324/417 (77.70%), Postives = 351/417 (84.17%), Query Frame = 3
Query: 174 GAMATASPGDKAQRIKEQATALHRAGEYDEAAREFARAAELLEAAGGALAPPPALSAIRLSLAAAQLKCGDLRGAEATCSQLLRTPGLPRALRQKASYRRGMSRKRQAEAAGAGLAGFRLAQKAYRDAYLSVELSTSQGGGAAGPAEGDAKAVELMAEMEQGDWGQGRLTEADRIAARSKADKHLTSLASVTPPARG-PTPGGGIFDMLGAGGAXXXXXXXXXXXXXXXXXXXXXXXXMPGLMDMMAAGMGXXXXXXXXXXXXXXXLMSMLMXXXVAGENGGLGLGGAADGQDPKQLLKMAKKMSKVVKKQLRNPGTQQLVCSFLKQAEPETLISLVGAAGFPNANEAMVGWVSSYLKNADGKTLESWIDYGEIAAGVYRRLSQLFVLWSRGIALAGIWLLWVWIKACFAPIVVKAA 1421
G +A ASPGD+A+RIKE+ATALHRAG+Y+EAA EFARAA+LLE AG LAPPPALSAIRLSLAA+QLK GDLRGAEATCSQLL+TPGLPR LRQKASYRRGMSRKRQAEAAGAG AG RLAQ+AYRDAYLSVELS GGAAGPA GDAKA+ LMAEME GDWGQG LTEADR AARSKADKHLT+LAS+ PPAR P GG+FDM G G XXXXXXXXXXX XXXXXXXX XX PGLMDMM AG GXXXXXXXXXXXXXXX LM XX A GLGG ADG DPKQ+LKMAKKMSK VKKQLRNPGTQQ+VC+FL QA+PETL+SL AGFP ANEA+V +S YL+ ADGKTLESWIDYGEIA +RRL Q VLWSRGIALAGIWL+WVW++ACFAPIVV+ A
Sbjct: 34 GGVAMASPGDQARRIKEEATALHRAGQYEEAAEEFARAAQLLEEAGVGLAPPPALSAIRLSLAASQLKSGDLRGAEATCSQLLKTPGLPRPLRQKASYRRGMSRKRQAEAAGAGAAGSRLAQRAYRDAYLSVELSND--GGAAGPAAGDAKALGLMAEMEAGDWGQGWLTEADRSAARSKADKHLTALASMAPPARSTPAGSGGLFDMFGGG---XXXXXXXXXXXGXXXXXXXXLXXXPGLMDMMGAGTGXXXXXXXXXXXXXXXX---LMGXXXAKS----GLGGGADGPDPKQMLKMAKKMSKGVKKQLRNPGTQQMVCAFLNQAKPETLMSLATTAGFPGANEAIVNGLSGYLQKADGKTLESWIDYGEIATCAFRRLKQFSVLWSRGIALAGIWLVWVWVRACFAPIVVQKA 438 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig74.15049.1 >prot_C-linearis_contig74.15049.1 ID=prot_C-linearis_contig74.15049.1|Name=mRNA_C-linearis_contig74.15049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=465bp MVQKRRHRSILAVAALVACLCCGKAAGEAGSMGSFDATALRGKDSRGAMAback to top mRNA from alignment at C-linearis_contig74:710602..715264+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig74.15049.1 ID=mRNA_C-linearis_contig74.15049.1|Name=mRNA_C-linearis_contig74.15049.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4663bp|location=Sequence derived from alignment at C-linearis_contig74:710602..715264+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig74:710602..715264+ >mRNA_C-linearis_contig74.15049.1 ID=mRNA_C-linearis_contig74.15049.1|Name=mRNA_C-linearis_contig74.15049.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2790bp|location=Sequence derived from alignment at C-linearis_contig74:710602..715264+ (Chordaria linearis ClinC8C monoicous)back to top |