mRNA_C-linearis_contig74.15032.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig74.15032.1
Unique NamemRNA_C-linearis_contig74.15032.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: D8LD21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD21_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 4.720e-128
Identity = 198/220 (90.00%), Postives = 209/220 (95.00%), Query Frame = 2 
Query:  257 GEGAPREAPHWTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIFGKDQG 916
            G+ A R+APHWTHTYDKWDGW+DP+E+AKKREEEEKRAKSYR+NHMACAHDRSAERKVMEMPIEEK  ACRDFR+RGNLFH EGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGEL QTLDCCYQAL AEP+NVKALYRRAVVYR RD+FKEAS DLGKALAQRPN+VMLRKESAVLKSKIASYRERRKAMG  IFGK+QG
Sbjct:   10 GDNARRDAPHWTHTYDKWDGWEDPDELAKKREEEEKRAKSYRENHMACAHDRSAERKVMEMPIEEKISACRDFRQRGNLFHAEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELDQTLDCCYQALRAEPNNVKALYRRAVVYRLRDRFKEASVDLGKALAQRPNEVMLRKESAVLKSKIASYRERRKAMGEQIFGKEQG 229
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A6H5KB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB41_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 4.320e-76
Identity = 161/263 (61.22%), Postives = 181/263 (68.82%), Query Frame = 2 
Query:  431 MEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQA--------------LMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIFGKDQGGQSVHDGDGTPPENPAESPLPGKNDDGHGHDDVAGGPEGYNPSESIGKAPGQEMGG--TGGSYTV-GEVGPAGFGNGDLEGPQRHDL 1168
            ME+PIEEK  ACRDFR+ GNLFH EGQ   G+     ALIYYDFCFPD+DSQQQELDDIRQACLLNSAACFLACGEL QTLDCCYQA              L AEP+NVKALYRRAVVYR RD+FKEAS DLGKALAQRPN+VMLRKESAVLKSKIASYRERRKAMG HIFGK+QG +   +  G+   N        +  +  G +  A      +P +    AP   +GG  +GG Y V   V PAG G+G  EG + HDL
Sbjct:    1 MEVPIEEKISACRDFRQGGNLFHAEGQ---GSA----ALIYYDFCFPDDDSQQQELDDIRQACLLNSAACFLACGELDQTLDCCYQASCCPLAHFLGRARALRAEPNNVKALYRRAVVYRLRDRFKEASVDLGKALAQRPNEVMLRKESAVLKSKIASYRERRKAMGEHIFGKEQG-RDQDNARGSSGNNGRALQQESETQEKDGSEPSAVEAAEDDPYQCF--APAAAVGGNESGGGYAVTAAVVPAGSGSGKEEGRRWHDL 253
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A836CM33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM33_9STRA)

HSP 1 Score: 179 bits (455), Expect = 7.570e-47
Identity = 99/213 (46.48%), Postives = 133/213 (62.44%), Query Frame = 2 
Query:  287 WTHTYDKWDGWQDPEEVAKK-REEEEKRAKSYRDNHMA--CAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALA----QRPNDVMLRKESAVLKSKIASYRERRKAMGAHIFG 904
            WT TY  WD W+DPE+ A+  ++  EK  ++ R   ++  C+HD SAE+++M++   EK  AC  FR +GN F +EGQY+R  LQYRQALIY D+ FPD    Q  LDD+R ACLLNSAACF+  GELG+ L+ C QAL   P   KALYRRA VYR +D+F  A ADL  A      +  +   LR E  +L+++   Y    +A+G  +FG
Sbjct:   21 WTRTYSYWDRWEDPEQGARPAKDNAEKTDRAARSQALSGCCSHDHSAEKRIMDLSEPEKVAACEAFRAKGNAFFEEGQYQRATLQYRQALIYCDYAFPDAGELQTRLDDVRLACLLNSAACFVRAGELGEALEACEQALQERPRCAKALYRRAQVYRLKDEFALAKADLAAAXXXXXPRAADAAALRHERMMLRARETCYGANARALGRQMFG 233
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A7S2HHR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHR7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.190e-44
Identity = 98/206 (47.57%), Postives = 134/206 (65.05%), Query Frame = 2 
Query:  287 WTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQEL-DDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIF 901
            W+  Y ++DG+ D EE A+  E+E ++A + R    +C+HD S ER+V E+P+++K  A   F  RGN+   EGQY   + QY+ A++YY++ FPDE S + ++ + IR  C LNSAAC +  G   + L+ CYQ L  EP NVKALYRRA +YR RDQF EA ADL  A  + PNDV LR+E   L +KI SYR +R+AM  HIF
Sbjct:    9 WSQKYREFDGFIDHEEQAQIEEQERQKATAQRPG-TSCSHDHSRERQVYELPLDKKIEAMDRFHLRGNILFDEGQYEMASEQYKSAMVYYEYTFPDEGSDEWDVVNRIRLVCNLNSAACNMKAGLYDEALNNCYQVLREEPLNVKALYRRAQMYRIRDQFSEAKADLLLAWRELPNDVQLRQEYLTLSNKIKSYRRKREAMAKHIF 213
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A662XSD5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSD5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.110e-42
Identity = 92/223 (41.26%), Postives = 136/223 (60.99%), Query Frame = 2 
Query:  257 GEGAPREAPHWTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQR-------PNDVMLRKESAVLKSKIASYRERRKAMGAHIFG 904
            GE A      WT TY+KWD W+DPEE+A++ +   +R++      M C HD SAE+K+M+M  +EK  AC +FR  GNLF + GQY+R A  Y +AL+Y+++ FPD + +  + D ++   LLN AAC L    L   +    QAL  +PDNVKALYRRA  YR +D+F+ AS D+ +AL           +D +L +E A+L++K+ +Y+ R K +   +FG
Sbjct:   88 GEEAGSSPYDWTRTYEKWDAWEDPEELARQEQAARERSERAAKAQMGCNHDHSAEQKLMDMSTQEKLTACDEFRVLGNLFFRHGQYQRAAYNYHKALVYFEYVFPDTEEEDIQADALKLKLLLNFAACRLKTLHLDDAIHHANQALQLDPDNVKALYRRAQAYRLKDEFELASQDISRALELSGTSENAPTSDPLLVQEKALLQAKMLAYKLRTKQVSTAMFG 310
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: K3WFS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFS9_GLOUD)

HSP 1 Score: 164 bits (415), Expect = 4.980e-41
Identity = 86/209 (41.15%), Postives = 134/209 (64.11%), Query Frame = 2 
Query:  287 WTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKAL----AQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIF 901
            WT TY+KWD W+DPEE+A++ +E  +R++      + C HD SAE+K+M+M  +EK  AC +FR+ GNLF + GQY+R A  Y +AL+Y+++ FPD D++ +  D ++   LLN AAC L  G L   +    QAL  +  NVKALYRRA  +R RD F  A  D+ +A+    A+  +D +L +E A+L++K+ +Y+ + K + + +F
Sbjct:   59 WTKTYEKWDAWEDPEELARQEQEARERSERVAREQLGCNHDHSAEQKLMDMMTQEKLDACDEFRQLGNLFFQHGQYQRAAYHYHKALVYFEYIFPDTDAETEHHDALKLKVLLNFAACRLKTGHLEDVVQHADQALALDVANVKALYRRAQAHRLRDDFDRAMQDINRAIEIAQAEDASDPLLVQEKALLQAKMLAYKLKSKQVSSAMF 267
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: D0NSG6_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NSG6_PHYIT)

HSP 1 Score: 159 bits (401), Expect = 2.590e-39
Identity = 87/214 (40.65%), Postives = 132/214 (61.68%), Query Frame = 2 
Query:  284 HWTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALA------QRPN-DVMLRKESAVLKSKIASYRERRKAMGAHIFG 904
            +WT TY+KWD W+DPE++A++ +E  +R++      M C HD SAE+K+M+M  +EKT AC + R  GNLF K GQY+R A  Y +AL+Y+++ FPD D ++ + D ++   LLN AAC L    L   +    QAL    +NVKALYRRA   R +D+F  A  D+ +A+         P+ D +L +E  +L++K+ +Y+ R K + A +FG
Sbjct:   41 NWTRTYEKWDAWEDPEDLARQEQEARERSERAAKAQMGCNHDHSAEQKLMDMTTQEKTTACDELRVLGNLFFKHGQYQRAAFHYHKALVYFEYVFPDTDEEEAQADALKLKLLLNFAACRLKTLHLDDAVHHANQALEINTNNVKALYRRAQANRLKDEFHLAQKDIERAIKLSNATEDTPSIDSLLLQEKKLLQAKMLAYKLRTKQVSAAMFG 254
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A6G0XP24_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP24_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.700e-39
Identity = 88/206 (42.72%), Postives = 128/206 (62.14%), Query Frame = 2 
Query:  287 WTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDN-HMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIF 901
            WT  Y+KW  W+DPEE+A K  E+E R KS R     +C HD SAE+K+M+M  ++K + C  FRR GN F   GQY+R A  Y +ALIY+++ F D D +Q ++DD+++  LLN A C +      +++     AL  + D+VKALY RA+ YR +D+F  A  DL +AL+  P+D  L  E  +L +K A+YR + K +GA +F
Sbjct:   60 WTRNYEKWQAWEDPEELAAK--EKELRDKSERAQMRTSCNHDHSAEQKLMDMSTQDKLIKCDAFRRLGNRFFAHGQYQRAAYHYHRALIYFEYVFCDTDDEQHQMDDLKKRALLNFALCRIKTKHTDESIHHATLALKLDADSVKALYIRAMGYRMQDKFDLAQGDLDRALSLAPDDAALIHEKHILTAKKAAYRVKSKQLGAAMF 263
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A485LHB5_9STRA (Aste57867_20885 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHB5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.980e-38
Identity = 93/212 (43.87%), Postives = 125/212 (58.96%), Query Frame = 2 
Query:  272 REAPH-WTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPN-DVMLRKESAVLKSKIASYRERRKAMGAHIF 901
            REA + WT  Y+KWD W+DPEE+A K     ++A+  R    +C HD SAE+K+M+M    K   C  FRR GN F   GQY+R A  Y +ALIY+++ FPD D +Q E+D ++   LLN   C L    + Q +     AL  EPD+VKALY RAV +R +D F +A ADL +A A     D  L  E  VL +K A+YR + K +GA +F
Sbjct:   54 REAGYDWTREYEKWDAWEDPEELAAKETAAREKAERAR-MRTSCNHDHSAEQKLMDMSTRAKLTQCDTFRRLGNRFFTHGQYQRAAYHYHRALIYFEYIFPDTDDEQTEMDALKVRVLLNFGLCRLKTKHIDQAIHHATLALKIEPDSVKALYIRAVGHRMQDAFDDAQADLDRAAALSTTPDAALTAEKRVLAAKKAAYRVKSKQLGAAMF 264
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BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Match: A0A329SRI4_9STRA (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329SRI4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.830e-38
Identity = 87/213 (40.85%), Postives = 126/213 (59.15%), Query Frame = 2 
Query:  287 WTHTYDKWDGWQDPEEVAKKREEEEKRAKSYRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGALQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLDCCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKAL-------AQRPNDVMLRKESAVLKSKIASYRERRKAMGAHIFG 904
            WT TY+KWD W+DPEE+A++ +E  +R++      M C HD SAE+K+M+M  +EK  AC +FR  GNLF K GQY+R A  Y +AL+Y+++ F D               LLN AAC L    L   +    QAL  +P+NVKALYRRA  YR +D+F  A  D+ +A+       A +  D +L +E  +L++K+ +Y+ R K + A +FG
Sbjct:   63 WTRTYEKWDAWEDPEELARQEQEARERSERAAKAQMGCNHDHSAEQKLMDMTTQEKLAACDEFRVLGNLFFKHGQYQRAAFHYHKALVYFEYVFTDXXXXXXXXXXXXXXLLLNFAACRLKTMHLDDAVHHANQALEIDPNNVKALYRRAQAYRLKDEFDLAQKDIERAVELSKAAEATQSVDSLLIQEKKLLQAKVLAYKLRTKQVSAAMFG 275
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig74.15032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD21_ECTSI4.720e-12890.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB41_9PHAE4.320e-7661.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM33_9STRA7.570e-4746.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HHR7_9STRA3.190e-4447.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A662XSD5_9STRA9.110e-4241.26Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
K3WFS9_GLOUD4.980e-4141.15Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NSG6_PHYIT2.590e-3940.65Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A6G0XP24_9STRA3.700e-3942.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LHB5_9STRA2.980e-3843.87Aste57867_20885 protein n=1 Tax=Aphanomyces stella... [more]
A0A329SRI4_9STRA6.830e-3840.85Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig74contigC-linearis_contig74:602690..608635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.9
Seed ortholog evalue1.6e-109
Seed eggNOG ortholog2880.D8LD21
KEGG koko:K09571,ko:K20412
KEGG Pathwayko04915,map04915
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0071704,GO:0071944,GO:0099402,GO:0140096,GO:1901564
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04090
Exons8
Model size2818
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig74.15032.1prot_C-linearis_contig74.15032.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig74 602916..607123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.0972278-UTR-C-linearis_contig74:602689..6029151622930416.0972278-UTR-C-linearis_contig74:602689..602915Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 602690..602915 +
1690881058.5283706-UTR-C-linearis_contig74:602689..6029151690881058.5283706-UTR-C-linearis_contig74:602689..602915Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 602690..602915 +
1622930416.2485788-UTR-C-linearis_contig74:607123..6086351622930416.2485788-UTR-C-linearis_contig74:607123..608635Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 607124..608635 +
1690881058.6400752-UTR-C-linearis_contig74:607123..6086351690881058.6400752-UTR-C-linearis_contig74:607123..608635Chordaria linearis ClinC8C monoicousUTRC-linearis_contig74 607124..608635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930416.1120236-CDS-C-linearis_contig74:602915..6030111622930416.1120236-CDS-C-linearis_contig74:602915..603011Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 602916..603011 +
1690881058.5471632-CDS-C-linearis_contig74:602915..6030111690881058.5471632-CDS-C-linearis_contig74:602915..603011Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 602916..603011 +
1622930416.12373-CDS-C-linearis_contig74:603609..6037051622930416.12373-CDS-C-linearis_contig74:603609..603705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 603610..603705 +
1690881058.559148-CDS-C-linearis_contig74:603609..6037051690881058.559148-CDS-C-linearis_contig74:603609..603705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 603610..603705 +
1622930416.1376185-CDS-C-linearis_contig74:604184..6043071622930416.1376185-CDS-C-linearis_contig74:604184..604307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 604185..604307 +
1690881058.5743756-CDS-C-linearis_contig74:604184..6043071690881058.5743756-CDS-C-linearis_contig74:604184..604307Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 604185..604307 +
1622930416.1560557-CDS-C-linearis_contig74:604745..6048921622930416.1560557-CDS-C-linearis_contig74:604745..604892Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 604746..604892 +
1690881058.5853233-CDS-C-linearis_contig74:604745..6048921690881058.5853233-CDS-C-linearis_contig74:604745..604892Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 604746..604892 +
1622930416.1747892-CDS-C-linearis_contig74:605313..6053901622930416.1747892-CDS-C-linearis_contig74:605313..605390Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 605314..605390 +
1690881058.5986772-CDS-C-linearis_contig74:605313..6053901690881058.5986772-CDS-C-linearis_contig74:605313..605390Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 605314..605390 +
1622930416.1953182-CDS-C-linearis_contig74:605811..6058931622930416.1953182-CDS-C-linearis_contig74:605811..605893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 605812..605893 +
1690881058.6113446-CDS-C-linearis_contig74:605811..6058931690881058.6113446-CDS-C-linearis_contig74:605811..605893Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 605812..605893 +
1622930416.2141306-CDS-C-linearis_contig74:606314..6066411622930416.2141306-CDS-C-linearis_contig74:606314..606641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 606315..606641 +
1690881058.621109-CDS-C-linearis_contig74:606314..6066411690881058.621109-CDS-C-linearis_contig74:606314..606641Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 606315..606641 +
1622930416.2308893-CDS-C-linearis_contig74:606991..6071231622930416.2308893-CDS-C-linearis_contig74:606991..607123Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 606992..607123 +
1690881058.6308742-CDS-C-linearis_contig74:606991..6071231690881058.6308742-CDS-C-linearis_contig74:606991..607123Chordaria linearis ClinC8C monoicousCDSC-linearis_contig74 606992..607123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig74.15032.1

>prot_C-linearis_contig74.15032.1 ID=prot_C-linearis_contig74.15032.1|Name=mRNA_C-linearis_contig74.15032.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=360bp
MAAASAPAGHGEGAPREAPHWTHTYDKWDGWQDPEEVAKKREEEEKRAKS
YRDNHMACAHDRSAERKVMEMPIEEKTVACRDFRRRGNLFHKEGQYRRGA
LQYRQALIYYDFCFPDEDSQQQELDDIRQACLLNSAACFLACGELGQTLD
CCYQALMAEPDNVKALYRRAVVYRRRDQFKEASADLGKALAQRPNDVMLR
KESAVLKSKIASYRERRKAMGAHIFGKDQGGQSVHDGDGTPPENPAESPL
PGKNDDGHGHDDVAGGPEGYNPSESIGKAPGQEMGGTGGSYTVGEVGPAG
FGNGDLEGPQRHDLALPVHVDLSQLESLAGCAWPVESIGGKEEEGQTESQ
LASFQSREV*
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mRNA from alignment at C-linearis_contig74:602690..608635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig74.15032.1 ID=mRNA_C-linearis_contig74.15032.1|Name=mRNA_C-linearis_contig74.15032.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5946bp|location=Sequence derived from alignment at C-linearis_contig74:602690..608635+ (Chordaria linearis ClinC8C monoicous)
CGGCGAGGCGTCTGCTGGTCTTTTTTGCTAGCACAAGGGAATAACGAGCT
GGTGGACCTCTAAGCATTCCCCACTTCCTTGTTGCTGCGTGTACAGCAGT
TGGTGCATACTGGGTCTTTTTATTAACGGGCCTTTTTATTAATCAGACTA
CATTATAGTGCTTTTTGCCTTTTCAAGGATCGCAGCCAATTCCGCCGCGT
CCGAAGTGAATATCCACATATCCACGATGGCAGCAGCATCGGCACCAGCC
GGCCACGGAGAAGGCGCCCCAAGGGAAGCTCCTCACTGGACGCACACCTA
CGACAAGTGGGATGGCTGGCAGGTGAGCCTCGGTAGAACCAGACACAGAA
CACGTGCGAATGACCTCTTCCAAAACACACACACACACCCACACACGATC
TACCTTTTTGATATCCCTCCGCGTTCTCAGCACTCGCCGTTCTCAACGCT
CGCCGACTACGGCCGATAGATGAGCCAAAGGACAACAATACTAGCAAGAC
CCGAGACAGACAGACAGAGTGTTAGACATATAGACAGAGAGTACAAAAAA
ACAGGTACTATTGCCGTTGATGACCACTACTCCGGGGGCTTGTGTAAATT
TACTTAGAATATGCTCCTAAATACTACAGCCGGCCTTGAAAGTTCGCTCG
AGAATGCAGGCATATTCCTGCGCTGTAGCCCTTGGTCAAACTTGCGCTGG
AGGCCTTGCCAGATCCTTGACATCGCCGAGCGACCCCTGCTCGATAAAAA
TACTCTGACCAAGTGCTCCAGAAGCGCTACTGCAGTAACGCAGTATCCCT
TCCGCTTGGTAAACACGATTCTGAGGTTGATGAGGTCGCTGAAGTGGGTA
GGCACCCAAGAGTGTCCCTAAATTTTCAACATGCGCATCGACGCTCCGCC
CGCCTGGTTGAATCATGAAGGATCCCGAGGAAGTGGCAAAGAAGCGCGAG
GAGGAGGAGAAGCGGGCCAAGAGCTACAGGGACAACCACATGGCCTGCGC
CCATGATCGCTCAGCCGTGAGTACGTACCACGGCATACCGCCGTGCATGC
CATACATACTATTGTACGCCCGCCTTGGCCACAAAGCCCATTTTCCTGCT
TGTGCGTGCCATTCTCGGGCCTTCCGTAATTCCGCGTGTGGTGCTGTTTT
CCTTACTGTCCTTTTCACGGCCGTCACGAATCACTTCACGCGCCAATCAA
CCACGTCGTTCCCCATCTCTATCATCTATCTTCTATCTATCTATCTAACT
GTCTAGCTGTCTACTGTGTCCGTCTATCTGTCTGCTACATGCTCCCGCTC
CCTCCCTCAAAGCGAGAAACGATAAGCTGTCCCCATCAACATTCGCGTCT
GGGCTGCGTTGTGTACACAACACAGCCGAAGCCATTTTGACGCATTCCAA
GATGAAGATTTGATCGAGTAATAGTATTTACTAGTGTTTCCACATGGCGT
GTTGCCGTCCTGCGCCCCCTCCCCGCCTGCCTATCCCGACCACAGGAGAG
GAAAGTAATGGAAATGCCTATCGAGGAGAAGACTGTAGCGTGTCGAGACT
TCCGGCGAAGGGGTAACCTGTTCCACAAAGAGGGCCAGTATCGGAGAGGG
GCGCTGCAATATCGACAGGTGGTTATATCGCTAAATTTAAAGTGCCTTTG
GTGAAACAACACGCAGCTGTTCTTGTTCTTACGTTGTTTCACCTTCAACC
CGAACAGACCCCAAGCCTAATCCCAATCCTCCTCCGTCTGCATAGACCTT
CTCTCCCGCTGGTTTTCTTCCCTCTTCCCTCTTCCCTCCTCCCTCCCGGT
CCATCGAACAAAGAAGTGTTGCCGTCTGCCTGCCTCTGTCCGTGTAGCAT
AGCGTAGCCATGATCCACATATCAAACAAAGCCGTGCAGAACCATGCTCC
GACCAAGAGAGGCAGGCCCACACGCAACAACAACAACACCAGCGCCATCC
CTATCTCATAGAGGACGCTCGCATCTTGTTTGACACTTTTTCTGCCATGG
TTCTCCCCCCTTGCCCTTCCCTCCAACCAACTTCCGCTACTACTTTGCCC
GACCAGGCTTTGATCTACTACGACTTCTGCTTTCCCGACGAAGATTCCCA
GCAGCAAGAGCTGGACGACATTCGGCAGGCGTGTCTCCTTAACTCCGCCG
CATGCTTTCTCGCTTGTGGGGAGCTGGGTCAAACCCTGGACTGCTGTTAC
CAGGCAAGACCGCGACGTGACTGCTGTTCTGTTGCTAAAGTGGCCAATGC
TTGAGCATGCGTTTTCATCGTTGTCTCTAATTTATTTTGGCTGAGGCACA
ACCATTACCATTTACCGTGGGTTGCAAGGTCAGACGGCGGCGGATCTTGT
GGGGCGGGATTATAATAGCAAAGCGCGGCCGTACCTTGCTTGCGCAGCCT
TTCAATTGCGGTTTAAATACAAGCTGCTACGTCATGAGGACAGCCTCCCA
GAGAGTGGGTTGCATCTGTTTGGCTGAAATTTCTGCTGCGACATGGATGG
TGTTTTTTATGTTTATACTTCGAAGTATGGCACTCTAAATACTGGTGTCC
CTCTCTTGTACTTGTGGGCTTCATCCTCACGTAACCCTAACCTTTTTCTC
GGCGCACTGTTGGGACTCGAGCAGGCTCTGATGGCGGAGCCGGACAACGT
GAAGGCCTTGTACCGCCGCGCCGTGGTGTACCGCCGGCGCGATCAGTTTA
AGTGAGTGGGTTGGCCGTGTTCTTGAAAGGAAATATTTCATGACAAGTGC
ATGACAGGGGAACGGCAAACAGTTTTGTTCTGTCAAGGGATTGGGATTGT
TTTGTGTCAACCCACAAACTTGTACAAGTATGGCTCCATCTACCTCGTCA
TCGCACCGACTGCCTCTCGGGTACAGTACCCCACCTTTGAGCGCGCAACA
AAGTGAAGCGGGCTTCGAATATGTACGAGTACCGGGTTGGCCGCGTTTTC
TTTTCGAATCACCCTTCTGCTCAAGATCAAGACCATGATTCATTTTATTC
GCTTGATGGGAGGGTCTTTTTCTCCGATGGCCAACCCTTCGCCCCCCCCT
CGCTACCCCCTCTTTTCTCTCGCCGGATACTCGGTGCTTGCCACTCGTCA
CTCGTCGACCGTCGGTTTGCAGAGAGGCGTCGGCCGACCTTGGGAAAGCG
TTAGCGCAGCGCCCGAATGACGTCATGCTCCGCAAGGAAAGCGCGGTCCT
CAAGGTGCGATAGGCTCTGCATGACCTATGGAATTGTTGTACAAGCAACG
CGAGAGGGACAAGTGGGGGCACCATGCATGACAGAGCCGGAAAACAGGGG
TGGGGGTTGTGCTTCATGCGCGGAAACCACTTCTGATTGACAGTTGAACG
GGGCGGAGCTCGTGTTGTAGGTAGGCTGGACAAGACCCCCCATTTGCGAG
AGGAATTTGTTTTGCCCAATTTAGCAGAGACCAAATGGGGCACACCAGCC
AATTGGGGGTTTGCATCAGGGATCCGGTTCGCTTCCCCTCGACACGGAAC
TCACATACACACCCTTCTCCTTGTATACTGCGTCTCCCCTTTCTTTTTTG
CATGCAACTACTCGATTTTTGTCCCTTCGCATGGAACGGTCGTGCATCAT
GCCATATCATTTCGGCATCCCGTAGAGCAAGATCGCCTCCTACCGAGAGC
GCAGAAAGGCCATGGGGGCACATATCTTCGGGAAAGATCAAGGAGGACAA
TCTGTCCACGACGGCGACGGGACACCCCCGGAAAACCCGGCAGAGTCACC
ACTCCCAGGCAAAAATGACGACGGCCATGGTCATGATGATGTGGCAGGCG
GGCCAGAGGGATACAATCCTTCGGAAAGCATTGGGAAGGCGCCGGGACAA
GAGATGGGAGGTACAGGTGGCAGTTACACCGTGGGCGAGGTTGGCCCCGC
TGGGTTTGGGAACGGCGACCTGGAGGGCCCTCAACGGCACGATCTTGCGT
TGGTGAGGATAACTCGGGTCTCAGTGTCATAGAGTTTGGTGTGGCAACAC
CGCGCAAACGACATGTTGACACGGCGTTGTTTCCGCCTTCCCTGGAGGTT
GTTTTGCTCATCCCTGTCGGTTGTCGGCTGTTTTAGAACTTGTGTCGTTT
CGGGTGTGTCGTGTCGAGCCGATACTGTACACCCAAAAAGGATAAAGCCT
TCGTCGCCAGGAACGCCGTTCGTCGAAAATAGCATGTATGTTAATGTTAA
CCCTCATCATCTCACCATGTCGTCATGGAATCCCATCCGTCGTTGTCTCG
CCATTGACTATTTACGTTATTCATGCCCGTTACTCTCCGCTCTTTGCCGC
AGCCCGTGCACGTCGATTTGTCGCAGCTGGAATCATTGGCGGGGTGCGCG
TGGCCTGTCGAAAGCATAGGGGGGAAGGAAGAAGAGGGCCAAACAGAGTC
CCAGCTTGCCTCATTTCAGTCGCGCGAAGTTTGAGGTGCAGAAAACTGGC
GCTGCTTTTATTTTTTCATGGTGTGCCGTCATGATTTTCGAACAGGATCG
GACGTGCCTTCGTGACTTGTTTCAACCTTTGACCTTTGACCGGCGTGCTA
TTTAGTGAGATTGGCTAGACTTTTCTGTTGGCGATGGGCTCGTACAGGTA
CTACAATACGCACTGCTACGCATTTAGCAGTGAGATTGACGGAAGACGAT
TGGTTGTATTATGTGGGATTGAAGGAGGACGCACGGATGGTATCTTTCGG
GTGTAGTATGGTATGTACATACTTGTAAATCATCGGATGTCTGTAGTTAC
GATGCAGTTAATCGCGTGATTTGATTTGCGTGGCCGGCTTGGGAGGCATT
GAGGGAGAGCCACGTAGGGTGTGGGCGTTGAGTTTGCTCACCCGGGTATA
CCTAGACTACCTGGCTGTTTTTTTTTACACAGATAGTGGGAGTGGCATCC
CATTCAGCAAGTTTGAACGTTTCACGGGGTACGGAAGATCGCAAACATTC
GCTTTGTCTTGCTTGGTGCTGGAGGGCACGCGTCAGTAGTGCTTTGGGGA
ACGTGTACGACCTGAACAACGACACAGGCGAAGCGAAACTCTTTTTGTTG
TGCTGTTTTCCAAATGACGAGGCATGACACGAGTTGTTCCATCCCACTAC
CCGCAGTCGTCGGTGTCAGAGAAAATCGTCGACAGGTTGATCTGTGGATT
CTTGCGACATTGGCGTCAGCACCACACACAGGCAGGGATCGGAATAACTT
GCATGTATTTAAAAAGACTTGGAACATGAACCGTGACAGCAGCCAAAAGA
AAAGCCGCGCAGCCTGCGCCACCTACACGACAGGCTCCACCAGAGAAGCA
TAGATACGGCTCCAAAAAAAAGCCCTTTCCAGACCTCCCACGGCCCACCT
CAAGCGTCTACCCGGCCCCGGCCCTTGTCAAAGCCTTCTAGACTAGAATA
CAAGAGTCAAGCGGAACATCACAACTACGCATGTGCCGGAATCATCTGCC
CGTTCAGCATCTGCTCGAGCGCTGACAACAAGAAAAAATGCGCGAGCGAC
ACGAGGGATGACGTAATAACACGACGAAAACACGCTACCGCCAACCAACC
GAATCAGCCACACACGTGACGTCGCATCCAACGGGAGAGGAAACACTTTT
TTTCTGGCTTGTCAGAGGCAACAGCAACAGCACGTAGTTCAGCAAAACAA
AAATAGCAAAGCTGCGCGACCGACCGACCGACCGCATCGAATCAACAAAA
TGAAACATACCAGGTTCCTTCGACAGTTCTACAGCGAGAACGTGAACGAA
CCTCGGCTCTCCGTGCCCCTTGCCATCGCAACAGAGAGCAGAGAGCGCTC
AACTCCAACTCAAGCATTGTCGGGAGTGCTTGGTCCTTGACCCCCACAAA
CCTCAAACTTAAACCGTTTCGCGCCGAAAGGGCAGCAAAAAAAAAAAAAA
ACAGGAATAATTGGACTATTAGTGCAGACAAAATCCAGGCCTACCT
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Coding sequence (CDS) from alignment at C-linearis_contig74:602690..608635+

>mRNA_C-linearis_contig74.15032.1 ID=mRNA_C-linearis_contig74.15032.1|Name=mRNA_C-linearis_contig74.15032.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at C-linearis_contig74:602690..608635+ (Chordaria linearis ClinC8C monoicous)
ATGGCAGCAGCATCGGCACCAGCCGGCCACGGAGAAGGCGCCCCAAGGGA
AGCTCCTCACTGGACGCACACCTACGACAAGTGGGATGGCTGGCAGATGG
CAGCAGCATCGGCACCAGCCGGCCACGGAGAAGGCGCCCCAAGGGAAGCT
CCTCACTGGACGCACACCTACGACAAGTGGGATGGCTGGCAGGATCCCGA
GGAAGTGGCAAAGAAGCGCGAGGAGGAGGAGAAGCGGGCCAAGAGCTACA
GGGACAACCACATGGCCTGCGCCCATGATCGCTCAGCCGATCCCGAGGAA
GTGGCAAAGAAGCGCGAGGAGGAGGAGAAGCGGGCCAAGAGCTACAGGGA
CAACCACATGGCCTGCGCCCATGATCGCTCAGCCGAGAGGAAAGTAATGG
AAATGCCTATCGAGGAGAAGACTGTAGCGTGTCGAGACTTCCGGCGAAGG
GGTAACCTGTTCCACAAAGAGGGCCAGTATCGGAGAGGGGCGCTGCAATA
TCGACAGGAGAGGAAAGTAATGGAAATGCCTATCGAGGAGAAGACTGTAG
CGTGTCGAGACTTCCGGCGAAGGGGTAACCTGTTCCACAAAGAGGGCCAG
TATCGGAGAGGGGCGCTGCAATATCGACAGGCTTTGATCTACTACGACTT
CTGCTTTCCCGACGAAGATTCCCAGCAGCAAGAGCTGGACGACATTCGGC
AGGCGTGTCTCCTTAACTCCGCCGCATGCTTTCTCGCTTGTGGGGAGCTG
GGTCAAACCCTGGACTGCTGTTACCAGGCTTTGATCTACTACGACTTCTG
CTTTCCCGACGAAGATTCCCAGCAGCAAGAGCTGGACGACATTCGGCAGG
CGTGTCTCCTTAACTCCGCCGCATGCTTTCTCGCTTGTGGGGAGCTGGGT
CAAACCCTGGACTGCTGTTACCAGGCTCTGATGGCGGAGCCGGACAACGT
GAAGGCCTTGTACCGCCGCGCCGTGGTGTACCGCCGGCGCGATCAGTTTA
AGCTCTGATGGCGGAGCCGGACAACGTGAAGGCCTTGTACCGCCGCGCCG
TGGTGTACCGCCGGCGCGATCAGTTTAAAGAGGCGTCGGCCGACCTTGGG
AAAGCGTTAGCGCAGCGCCCGAATGACGTCATGCTCCGCAAGGAAAGCGC
GGTCCTCAAGAGAGGCGTCGGCCGACCTTGGGAAAGCGTTAGCGCAGCGC
CCGAATGACGTCATGCTCCGCAAGGAAAGCGCGGTCCTCAAGAGCAAGAT
CGCCTCCTACCGAGAGCGCAGAAAGGCCATGGGGGCACATATCTTCGGGA
AAGATCAAGGAGGACAATCTGTCCACGACGGCGACGGGACACCCCCGGAA
AACCCGGCAGAGTCACCACTCCCAGGCAAAAATGACGACGGCCATGGTCA
TGATGATGTGGCAGGCGGGCCAGAGGGATACAATCCTTCGGAAAGCATTG
GGAAGGCGCCGGGACAAGAGATGGGAGGTACAGGTGGCAGTTACACCGTG
GGCGAGGTTGGCCCCGCTGGGTTTGGGAACGGCGACCTGGAGGGCCCTCA
ACGGCACGATCTTGCGTTGAGCAAGATCGCCTCCTACCGAGAGCGCAGAA
AGGCCATGGGGGCACATATCTTCGGGAAAGATCAAGGAGGACAATCTGTC
CACGACGGCGACGGGACACCCCCGGAAAACCCGGCAGAGTCACCACTCCC
AGGCAAAAATGACGACGGCCATGGTCATGATGATGTGGCAGGCGGGCCAG
AGGGATACAATCCTTCGGAAAGCATTGGGAAGGCGCCGGGACAAGAGATG
GGAGGTACAGGTGGCAGTTACACCGTGGGCGAGGTTGGCCCCGCTGGGTT
TGGGAACGGCGACCTGGAGGGCCCTCAACGGCACGATCTTGCGTTGCCCG
TGCACGTCGATTTGTCGCAGCTGGAATCATTGGCGGGGTGCGCGTGGCCT
GTCGAAAGCATAGGGGGGAAGGAAGAAGAGGGCCAAACAGAGTCCCAGCT
TGCCTCATTTCAGTCGCGCGAAGTTTGACCCGTGCACGTCGATTTGTCGC
AGCTGGAATCATTGGCGGGGTGCGCGTGGCCTGTCGAAAGCATAGGGGGG
AAGGAAGAAGAGGGCCAAACAGAGTCCCAGCTTGCCTCATTTCAGTCGCG
CGAAGTTTGA
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