prot_C-linearis_contig73.14962.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig73.14962.1
Unique Nameprot_C-linearis_contig73.14962.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length42
Homology
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A1L2F1W9_9PHAE (Photosystem II reaction center protein K n=3 Tax=Fucales TaxID=3009 RepID=A0A1L2F1W9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.020e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ME +LLTKLPELYA+YSPIVDILPI+PVLFLLLAFLWQ
Sbjct:    1 MESVLLTKLPELYAIYSPIVDILPIIPVLFLLLAFLWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A7S6U9V7_9STRA (Photosystem II reaction center protein K n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.260e-11
Identity = 29/38 (76.32%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            MEIIL++KLP+ Y ++SPI+DILPIVPVLFLLLAF+WQ
Sbjct:    1 MEIILISKLPDAYTIFSPIIDILPIVPVLFLLLAFVWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: B7T221_VAULI (Photosystem II reaction center protein K n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T221_VAULI)

HSP 1 Score: 60.1 bits (144), Expect = 3.210e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ME ILLTKLPE YA++SPI+DILPI+P+ FLLLAF+WQ
Sbjct:    1 MEGILLTKLPEAYAIFSPIIDILPIIPIFFLLLAFVWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A8F0F735_9PHAE (Photosystem II reaction center protein K n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F735_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.480e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            M I+ L KLPELY ++SP+VDILP+VPVLFLLLAFLWQ
Sbjct:    1 MVILFLNKLPELYLIFSPVVDILPVVPVLFLLLAFLWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A2I4Q318_9PHAE (Photosystem II reaction center protein K n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q318_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.210e-11
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            M ++ L KLPELY ++SP+VDILP++PVLFLLLAFLWQ
Sbjct:    1 MVVVFLNKLPELYVIFSPLVDILPVIPVLFLLLAFLWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: B2XT42_HETAK (Photosystem II reaction center protein K n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT42_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 1.860e-10
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ME ILL KLPE Y ++SPIVD+LP++PVLFLLLAF+WQ
Sbjct:    1 MEGILLAKLPEAYTIFSPIVDVLPVIPVLFLLLAFVWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A8E5XRF5_9PHAE (Photosystem II reaction center protein K n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.340e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ME ILL KLP  YA++SPI+DILPI+PV FLLLAF+WQ
Sbjct:    1 MESILLAKLPTAYAIFSPIIDILPIIPVFFLLLAFVWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: A0A1C9CCI5_9RHOD (Photosystem II reaction center protein K n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCI5_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 5.450e-10
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    3 IILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            +ILLTKLPE YA++ P++DILPI+PVLFLL+AF+WQ
Sbjct:    4 LILLTKLPEAYAIFRPLIDILPIIPVLFLLMAFVWQ 39          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: PSBK_PHATC (Photosystem II reaction center protein K n=46 Tax=Sar TaxID=2698737 RepID=PSBK_PHATC)

HSP 1 Score: 56.6 bits (135), Expect = 7.590e-10
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = 0
Query:    1 MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ME +LL++LPE Y ++SPIVD+LPI+PV FLLLAF+WQ
Sbjct:    1 METLLLSRLPEAYVVFSPIVDVLPIIPVFFLLLAFVWQ 38          
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Match: K9ZXR9_9STRA (Photosystem II reaction center protein K n=8 Tax=Monodopsidaceae TaxID=425072 RepID=K9ZXR9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-9
Identity = 26/35 (74.29%), Postives = 34/35 (97.14%), Query Frame = 0
Query:    4 ILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQ 38
            ILL KLP+++A++SPIVDILP++PVLFLLLAF+WQ
Sbjct:    4 ILLAKLPDVFAVFSPIVDILPVIPVLFLLLAFVWQ 38          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1W9_9PHAE4.020e-1489.47Photosystem II reaction center protein K n=3 Tax=F... [more]
A0A7S6U9V7_9STRA2.260e-1176.32Photosystem II reaction center protein K n=1 Tax=S... [more]
B7T221_VAULI3.210e-1176.32Photosystem II reaction center protein K n=1 Tax=V... [more]
A0A8F0F735_9PHAE6.480e-1176.32Photosystem II reaction center protein K n=1 Tax=P... [more]
A0A2I4Q318_9PHAE9.210e-1171.05Photosystem II reaction center protein K n=1 Tax=D... [more]
B2XT42_HETAK1.860e-1073.68Photosystem II reaction center protein K n=2 Tax=H... [more]
A0A8E5XRF5_9PHAE5.340e-1073.68Photosystem II reaction center protein K n=1 Tax=I... [more]
A0A1C9CCI5_9RHOD5.450e-1072.22Photosystem II reaction center protein K n=1 Tax=B... [more]
PSBK_PHATC7.590e-1068.42Photosystem II reaction center protein K n=46 Tax=... [more]
K9ZXR9_9STRA1.080e-974.29Photosystem II reaction center protein K n=8 Tax=M... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003687Photosystem II PsbKPFAMPF02533PsbKcoord: 4..38
e-value: 5.9E-18
score: 64.7
IPR003687Photosystem II PsbKPANTHERPTHR35325FAMILY NOT NAMEDcoord: 4..39
NoneNo IPR availablePANTHERPTHR35325:SF1PHOTOSYSTEM II REACTION CENTER PROTEIN Kcoord: 4..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..41
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR037270Photosystem II PsbK superfamilySUPERFAMILY161037Photosystem II reaction center protein K, PsbKcoord: 8..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:572893..573018 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14962.1mRNA_C-linearis_contig73.14962.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig73 572893..573018 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig73.14962.1 ID=prot_C-linearis_contig73.14962.1|Name=mRNA_C-linearis_contig73.14962.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=42bp
MEIILLTKLPELYAMYSPIVDILPIVPVLFLLLAFLWQVIQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003687PSII_PsbK
IPR037270PSII_PsbK_sf