mRNA_C-linearis_contig73.14956.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14956.1
Unique NamemRNA_C-linearis_contig73.14956.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-9
Identity = 99/340 (29.12%), Postives = 134/340 (39.41%), Query Frame = 2 
Query:  140 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVP--FLEIENALNAVRVPPGFPSGFPPP--SNLPGDGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEPLCG-----------------APMESFPPALAGVV-------PPIXXXXXXXXXXVTLTDGSFCQGPRTLDGLSLALNVVGVLLDEKDM-------DGLHLGEQLDAPW---VNDDEAE----FWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 1033
            LTDV  V GI FNL SLH       I +D  GVHL   RL+F  ++ G SL ATR+P  + + +   + V  PP      PP   + L    PP PS      G G   G P+   P TGHAGVVP++                                           +  F PALA  +       P +          +   +    Q    L  +S+ L+V G++  +  +       D L + E +  P    V  DE +    F A+   Q D         L+ F     AP    F VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   50 LTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLPPSYRDGDVIPSTVVPPPVVRQASPPGVGTGLFAQNPPPPSQ---ISGSGAGYG-PSSSFPSTGHAGVVPSTXXXXXXXXXXXXXXXXXXXSTTSXXXXXXXXXXXXXXXXXXTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLES---QDNLPLMDMSMFLDV-GLMNGQDSVPPGDFCPDPLGVCESVKPPVAFAVMQDELDVLRDFVAECRVQQDVGPPSLSHALAIF-----APGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQG 376
[Close]
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.520e-8
Identity = 100/348 (28.74%), Postives = 135/348 (38.79%), Query Frame = 2 
Query:  140 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVPFLEIENAL-NAVRVPPGFPSGFPPPSNLPGDGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAG------------------------------VVPASVGFQPINDADVVLLDAPRDEPLCGAPMESFPPALAGVVPPIXXXXXXXXXXVTLTDGS-------FCQGPRTLDGLSLALNVVGVLLDEKDM--------DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 1033
            ++DV  V GI FNL SLH       I +D  GVHL   RL+F  ++ G SL+ATR+P      A+ ++   PP   +   PPS   G     PSL  C                                                    V+P  +   P  D D      P  +P+  A +ES     + +V P           V LTD         F Q    +  +S+ L+V   L+D KD         D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   49 MSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLPQDYCGRAVTSSPDAPPRVSAQASPPSIGTGFVAATPSL--CQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLP--ICAFPSVDVDPTPTTIPDFQPVITAAVES-----SSIVSP---------PAVELTDFREIEINPLFSQDALPIMDMSMFLDVG--LMDGKDTVPPGDFFPDALELAESSDPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-AIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 375
[Close]
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.560e-7
Identity = 96/342 (28.07%), Postives = 134/342 (39.18%), Query Frame = 2 
Query:  140 LTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTGSSLYATRVP-FLEIENALNAVRVPPGFPSGFPPPSNLPG---DGPPDPSLPPCFGGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEP-----------------LCGAPMESFPPALAGVV-------PPIXXXXXXXXXXVTLTDGSFCQGPRTLDGLSLALNVVGVLLDEKDM-------DGLHLGEQLDAPWVNDDEAEFWAQTFDQLDGSEAGY-DCVLSAFVS--------AAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 1033
            LTDV  V GI FNL SLH    +  I +D  GVHL   RL+F  ++ G  L ATR+P      + + +  VPP       PP  + G     PP PS     G G G    P+   P TG AGVVP++                                      +    +  F PALA  +       P +          +   +    Q    L  +S+ L+V G++  +  +       D L + E +  P         +A   D+LD  +    +C +   V         A IAP    F VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   50 LTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLPPSYRDGDVIPSTVVPPPVVRQASPPGVVTGLFAQKPPPPSQ--ILGSGAGY--GPSSSFPFTGPAGVVPSTXXXXXXXXXXXXXXXXXXXSTTSXXXXXXXXXXXXXXDVVPTSIRDFQPALAAAIASSDVLSPSVVNPNVSREIEIMPLES---QDNLPLMDMSMFLDV-GLMNGQDSVPPGDFYPDPLGVCESVKPPVA-------FAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRETAKQQG 376
[Close]
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5KKW9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.680e-6
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 2 
Query:  767 DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 1033
            D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:   26 DALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-ATIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 117
[Close]
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.030e-5
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 2 
Query:  686 FCQGPRTLDGLSLALNVVGVLLDEKDM--------DGLHLGEQLDAPW----VNDDEAEFWAQTFDQLDGSEAGYDCVLSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG 1033
            F Q    +  +S+ L+V   L+D KD         D L L E  D P     V  D+ E  +    + +  +A     LS  + A IAP   PF VG  T   +IN +H  +GH+ EFL+RETAKQQG
Sbjct:  922 FSQDALPIMDMSMFLDVG--LMDGKDTVPPGDFFPDALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHAL-AIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRETAKQQG 1046
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JKY9_9PHAE1.190e-929.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JU31_9PHAE6.520e-828.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCR3_9PHAE1.560e-728.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKW9_9PHAE9.680e-639.78Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K3I1_9PHAE2.030e-535.94Integrase catalytic domain-containing protein n=5 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:489024..490056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1035
Cds size900
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930402.3825355-UTR-C-linearis_contig73:489023..4891561622930402.3825355-UTR-C-linearis_contig73:489023..489156Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 489024..489156 +
1690881051.4295342-UTR-C-linearis_contig73:489023..4891561690881051.4295342-UTR-C-linearis_contig73:489023..489156Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 489024..489156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930402.399827-CDS-C-linearis_contig73:489156..4900561622930402.399827-CDS-C-linearis_contig73:489156..490056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 489157..490056 +
1690881051.4416072-CDS-C-linearis_contig73:489156..4900561690881051.4416072-CDS-C-linearis_contig73:489156..490056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 489157..490056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14956.1prot_C-linearis_contig73.14956.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 489157..490056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14956.1

>prot_C-linearis_contig73.14956.1 ID=prot_C-linearis_contig73.14956.1|Name=mRNA_C-linearis_contig73.14956.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=300bp
MLLTDVSAVDGIGFNLISLHALSLSMTITIDADGVHLPTPRLTFPRNNTG
SSLYATRVPFLEIENALNAVRVPPGFPSGFPPPSNLPGDGPPDPSLPPCF
GGGGGSEGAPAYGVPPTGHAGVVPASVGFQPINDADVVLLDAPRDEPLCG
APMESFPPALAGVVPPIGSFPPAASGVVTLTDGSFCQGPRTLDGLSLALN
VVGVLLDEKDMDGLHLGEQLDAPWVNDDEAEFWAQTFDQLDGSEAGYDCV
LSAFVSAAIAPKRRPFMVGPQTRKFEINYYHRCSGHLCEFLLRETAKQQG
back to top

mRNA from alignment at C-linearis_contig73:489024..490056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14956.1 ID=mRNA_C-linearis_contig73.14956.1|Name=mRNA_C-linearis_contig73.14956.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1033bp|location=Sequence derived from alignment at C-linearis_contig73:489024..490056+ (Chordaria linearis ClinC8C monoicous)
TCGTGCGCGGGGATGATATTCCCTTGGGTTGGCGTTTTGTACAAGTCGGA
AATGGACAGATGCTCCGAGTGACGGCAAGGGGAAAACTGCTGCTGAATAT
ACATACACGCAACGATGCAGGTGTGGTGTCCACATGCTTTTGACCGATGT
TTCCGCGGTGGACGGGATTGGCTTCAACCTCATTTCCCTCCATGCCCTTT
CTTTGAGCATGACCATCACCATCGATGCTGACGGGGTGCACTTGCCCACT
CCTCGCTTGACTTTTCCGAGAAACAATACTGGCTCATCACTGTATGCGAC
GCGTGTGCCTTTCCTCGAGATCGAGAATGCTCTGAATGCTGTTAGGGTTC
CCCCCGGCTTTCCCTCTGGATTCCCCCCCCCCTCGAACCTCCCCGGTGAT
GGTCCCCCTGACCCGTCGCTGCCGCCATGTTTTGGTGGTGGTGGCGGGAG
TGAGGGGGCACCGGCATATGGTGTACCACCCACCGGCCATGCCGGTGTAG
TTCCTGCAAGTGTTGGCTTCCAGCCCATCAATGACGCTGATGTAGTGCTC
TTGGATGCCCCTCGGGACGAGCCGTTATGCGGAGCGCCCATGGAGAGTTT
CCCGCCCGCCCTTGCAGGTGTTGTACCTCCGATTGGAAGCTTCCCGCCCG
CCGCTTCTGGTGTCGTGACTCTCACAGATGGCAGTTTTTGCCAAGGCCCC
CGTACCCTTGATGGATTGAGCTTGGCTTTGAACGTGGTTGGTGTTCTGCT
TGATGAGAAAGACATGGATGGGCTCCACCTTGGAGAGCAATTAGACGCCC
CGTGGGTGAATGATGATGAGGCAGAGTTTTGGGCGCAAACGTTTGACCAA
CTCGACGGTAGTGAGGCCGGGTATGACTGCGTTTTGAGTGCGTTTGTTTC
CGCTGCTATTGCCCCGAAACGCCGCCCCTTCATGGTAGGGCCGCAGACTC
GCAAGTTCGAAATCAACTACTACCACCGCTGCTCTGGCCACCTTTGCGAA
TTCCTATTGCGTGAGACTGCCAAACAACAGGGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig73:489024..490056+

>mRNA_C-linearis_contig73.14956.1 ID=mRNA_C-linearis_contig73.14956.1|Name=mRNA_C-linearis_contig73.14956.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at C-linearis_contig73:489024..490056+ (Chordaria linearis ClinC8C monoicous)
ATGCTTTTGACCGATGTTTCCGCGGTGGACGGGATTGGCTTCAACCTCAT
TTCCCTCCATGCCCTTTCTTTGAGCATGACCATCACCATCGATGCTGACG
GGGTGCACTTGCCCACTCCTCGCTTGACTTTTCCGAGAAACAATACTGGC
TCATCACTGTATGCGACGCGTGTGCCTTTCCTCGAGATCGAGAATGCTCT
GAATGCTGTTAGGGTTCCCCCCGGCTTTCCCTCTGGATTCCCCCCCCCCT
CGAACCTCCCCGGTGATGGTCCCCCTGACCCGTCGCTGCCGCCATGTTTT
GGTGGTGGTGGCGGGAGTGAGGGGGCACCGGCATATGGTGTACCACCCAC
CGGCCATGCCGGTGTAGTTCCTGCAAGTGTTGGCTTCCAGCCCATCAATG
ACGCTGATGTAGTGCTCTTGGATGCCCCTCGGGACGAGCCGTTATGCGGA
GCGCCCATGGAGAGTTTCCCGCCCGCCCTTGCAGGTGTTGTACCTCCGAT
TGGAAGCTTCCCGCCCGCCGCTTCTGGTGTCGTGACTCTCACAGATGGCA
GTTTTTGCCAAGGCCCCCGTACCCTTGATGGATTGAGCTTGGCTTTGAAC
GTGGTTGGTGTTCTGCTTGATGAGAAAGACATGGATGGGCTCCACCTTGG
AGAGCAATTAGACGCCCCGTGGGTGAATGATGATGAGGCAGAGTTTTGGG
CGCAAACGTTTGACCAACTCGACGGTAGTGAGGCCGGGTATGACTGCGTT
TTGAGTGCGTTTGTTTCCGCTGCTATTGCCCCGAAACGCCGCCCCTTCAT
GGTAGGGCCGCAGACTCGCAAGTTCGAAATCAACTACTACCACCGCTGCT
CTGGCCACCTTTGCGAATTCCTATTGCGTGAGACTGCCAAACAACAGGGT
ATGCTTTTGACCGATGTTTCCGCGGTGGACGGGATTGGCTTCAACCTCAT
TTCCCTCCATGCCCTTTCTTTGAGCATGACCATCACCATCGATGCTGACG
GGGTGCACTTGCCCACTCCTCGCTTGACTTTTCCGAGAAACAATACTGGC
TCATCACTGTATGCGACGCGTGTGCCTTTCCTCGAGATCGAGAATGCTCT
GAATGCTGTTAGGGTTCCCCCCGGCTTTCCCTCTGGATTCCCCCCCCCCT
CGAACCTCCCCGGTGATGGTCCCCCTGACCCGTCGCTGCCGCCATGTTTT
GGTGGTGGTGGCGGGAGTGAGGGGGCACCGGCATATGGTGTACCACCCAC
CGGCCATGCCGGTGTAGTTCCTGCAAGTGTTGGCTTCCAGCCCATCAATG
ACGCTGATGTAGTGCTCTTGGATGCCCCTCGGGACGAGCCGTTATGCGGA
GCGCCCATGGAGAGTTTCCCGCCCGCCCTTGCAGGTGTTGTACCTCCGAT
TGGAAGCTTCCCGCCCGCCGCTTCTGGTGTCGTGACTCTCACAGATGGCA
GTTTTTGCCAAGGCCCCCGTACCCTTGATGGATTGAGCTTGGCTTTGAAC
GTGGTTGGTGTTCTGCTTGATGAGAAAGACATGGATGGGCTCCACCTTGG
AGAGCAATTAGACGCCCCGTGGGTGAATGATGATGAGGCAGAGTTTTGGG
CGCAAACGTTTGACCAACTCGACGGTAGTGAGGCCGGGTATGACTGCGTT
TTGAGTGCGTTTGTTTCCGCTGCTATTGCCCCGAAACGCCGCCCCTTCAT
GGTAGGGCCGCAGACTCGCAAGTTCGAAATCAACTACTACCACCGCTGCT
CTGGCCACCTTTGCGAATTCCTATTGCGTGAGACTGCCAAACAACAGGGT
back to top