mRNA_C-linearis_contig73.14976.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14976.1
Unique NamemRNA_C-linearis_contig73.14976.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:813632..814613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size180
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14976.1prot_C-linearis_contig73.14976.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 813632..814600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.789353-CDS-C-linearis_contig73:813631..8137591622930396.789353-CDS-C-linearis_contig73:813631..813759Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 813632..813759 +
1690881048.749514-CDS-C-linearis_contig73:813631..8137591690881048.749514-CDS-C-linearis_contig73:813631..813759Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 813632..813759 +
1622930396.8074658-CDS-C-linearis_contig73:814548..8146001622930396.8074658-CDS-C-linearis_contig73:814548..814600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 814549..814600 +
1690881048.7590432-CDS-C-linearis_contig73:814548..8146001690881048.7590432-CDS-C-linearis_contig73:814548..814600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 814549..814600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.8192394-UTR-C-linearis_contig73:814600..8146131622930396.8192394-UTR-C-linearis_contig73:814600..814613Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 814601..814613 +
1690881048.767792-UTR-C-linearis_contig73:814600..8146131690881048.767792-UTR-C-linearis_contig73:814600..814613Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 814601..814613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14976.1

>prot_C-linearis_contig73.14976.1 ID=prot_C-linearis_contig73.14976.1|Name=mRNA_C-linearis_contig73.14976.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=60bp
TRLTQDTYTTTFDHQVISGTTAAAKGRRTQHTTAGVWDTSSIGYQHTNAR
VASHELITH*
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mRNA from alignment at C-linearis_contig73:813632..814613+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14976.1 ID=mRNA_C-linearis_contig73.14976.1|Name=mRNA_C-linearis_contig73.14976.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at C-linearis_contig73:813632..814613+ (Chordaria linearis ClinC8C monoicous)
ACACGACTCACCCAAGACACATACACTACAACCTTCGACCATCAAGTTAT
CTCCGGCACTACAGCAGCGGCGAAGGGACGTCGAACTCAACACACAACAG
CAGGCGTCTGGGACACATCTTCTATAGGGTGAGATATACGCCGGCCCCAC
TTGCAGAGTTTCGAGCCGCTCTATGCCTCACGCCTCACCGCACCGTAGAG
ACGCGCGTCCAGCGCAGCAGGAGATGTGCCAGACTGCTCGCGACAGGCCG
CCTCGACGCGAAAACAGCAGTACGTCCATGCGTCTACTGAAATTATACCG
TGGACGAGAGAGGGCCAAACGTCGGTATATATATCTGCTCTTGTCTGAAA
TGCCCAAAGAACGCATGATATCAGCTTGGTGCTTCTTCGGAAAGCCAAGT
ACTCAAGCCCTCGTGATAAAATGTTGCTCGTGACAAGCTGTTGGAGCAAC
CGTCTCTCATACAACGCCCGCTGAGAAATATACCGCGCCCGTGTGACCTG
AATGAAGGCATTGATTGATGGACTAGTCTAAGTGATGGACGCTGATGTCT
CCTCGGTCGATCCTCTCGGCATATCAGCCGTACGTTGCACGCACCAGCGA
GATTAGTGCACGCTGGACGGTGTCTTGCTCTCATCATGCAAATGGTAGCA
CCCGCTCCTGTCCGGGTCTGCTTAGTACGACCGAGCTGCATCGAAGAACG
CGGTCAAACCTGTTCACGATCTCACGACCAAACAATGTACCGAGAAAGAT
CATCAATCCAACGAGAAAGAGCATCAATCCAAAAAACTGCACCTCACCCA
ATCAGGTGTGATCTACCAACAAACCACACCTATCGGCACGATTATTGTGC
AGTGACTCCAAGTCTGAACAAGCTGACTCTGCTGCCCACCGCTCACGGTT
TGCTTCGCTGCACACAGGTACCAGCACACCAACGCACGTGTCGCTAGCCA
TGAGCTCATTACCCACTGAAGCGCGTTGGACG
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Coding sequence (CDS) from alignment at C-linearis_contig73:813632..814613+

>mRNA_C-linearis_contig73.14976.1 ID=mRNA_C-linearis_contig73.14976.1|Name=mRNA_C-linearis_contig73.14976.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at C-linearis_contig73:813632..814613+ (Chordaria linearis ClinC8C monoicous)
ACACGACTCACCCAAGACACATACACTACAACCTTCGACCATCAAGTTAT
CTCCGGCACTACAGCAGCGGCGAAGGGACGTCGAACTCAACACACAACAG
CAGGCGTCTGGGACACATCTTCTATAGGACACGACTCACCCAAGACACAT
ACACTACAACCTTCGACCATCAAGTTATCTCCGGCACTACAGCAGCGGCG
AAGGGACGTCGAACTCAACACACAACAGCAGGCGTCTGGGACACATCTTC
TATAGGGTACCAGCACACCAACGCACGTGTCGCTAGCCATGAGCTCATTA
CCCACTGAGTACCAGCACACCAACGCACGTGTCGCTAGCCATGAGCTCAT
TACCCACTGA
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