mRNA_C-linearis_contig110.1435.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1435.1
Unique NamemRNA_C-linearis_contig110.1435.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.410e-40
Identity = 98/170 (57.65%), Postives = 118/170 (69.41%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRG--CHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILD-HTQSPLHRAALSEEWGSIRVLSALLKHGS 927
            DRSR+DG EIE+F+LVK  AT  Q K WLR PLEHAAA GN++LFTRLMDA A G  GWRG  CH RTLLGAAA G+K  +MI ALL+AG T DVN +FG         RESALHV+A RG+E  SKAL++AGA  ++ +   +SPLH AA   E G  RV+  LL+  +
Sbjct:    7 DRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVNAVFGTE-------RESALHVSAARGAEEASKALMAAGADPDLGNFEDESPLHLAA---EAGHDRVVRVLLERAN 166
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.230e-40
Identity = 91/159 (57.23%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:  433 RSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILD-HTQSPLHRAALSEEWGSIRVL 903
            RSRLDG EIE+F+LVK  A P+Q K W RAPLEHA A GN++LFTRLMDA ADG AGWRGCHGRTLLGAAA G+   +M+ ALL+AGA  DVNV FG          ES LHV+A RG+E    AL+ AGA  N+ D    S LH  A +   G   +L
Sbjct:   10 RSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTN-------ESTLHVSAARGAEASCTALMIAGADPNLRDWEGASSLHLTAKAGHHGVAGIL 161
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.810e-37
Identity = 95/163 (58.28%), Postives = 113/163 (69.33%), Query Frame = 1 
Query:  442 LDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILDHT-QSPLHRAALSEEWGSIRVLSALLKHG 924
            LDG E+E+F+LV+  AT  Q + WLRAPLEHAAA+GN++LFTRLMDA ADGSAGWRGCHGRTLLGAAA G  +  +   L + GAT DVNV FG R        ESALHVAA R  + +S+ L+ AGA  N+LD   +SPLH AA   E G  RVL  LL+ G
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVNVCFGDRL-------ESALHVAAGRDDQHLSRVLLIAGADPNLLDDVGRSPLHVAA---EKGHHRVLGFLLRKG 217
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.500e-35
Identity = 87/138 (63.04%), Postives = 104/138 (75.36%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILD 840
            DRSRL G EIE+F+L++  ATP+Q K WLRAPLEHAAA+GN++LFTRLMDA A+  AGWRGCHGRTLLGAAA G  + +MI  LL AGAT DVNVLFG  +       ESALHVAA RG++   +AL+ AGA  N+ D
Sbjct:   10 DRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSE-KMIRTLLTAGATDDVNVLFGGES-------ESALHVAAARGADDTCRALMIAGADPNVRD 139
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 3.420e-34
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNI 834
            DR+R+DG E+E+F+LV+  AT KQ K WLRAPLEHAAA GN+ LFTRLMDA A   AGWRGC GRTLLGAAA  SK+ +++ ALL AGA  DVNVLFG +       RESALH+AA RG+E  SKAL+ AGA  N+
Sbjct:   12 DRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAAC-SKNKKILRALLTAGAKSDVNVLFGAK-------RESALHLAAARGAEEASKALMIAGANPNL 139
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: A0A6H5KQY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.090e-33
Identity = 90/179 (50.28%), Postives = 117/179 (65.36%), Query Frame = 1 
Query:  409 MPGV*TPDRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILDHTQ-----SPLHRAALSEEWGSIRVLSALLKHGS 927
            M G    DRSR+DG E+++F+LV++  TP+Q K WL APL HAAA G ++LFTRL++A ADGSAGWRGCHGRTLLG AA  S   +M+ A L+AGAT DVNV FG  +       +SAL VAA RG+E    AL+ AGA  N +D+       S LH A  +   G  RV+  +L++G+
Sbjct:    1 MSGSKREDRSRVDGFEMKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAAR-SDGNQMVRAFLEAGATDDVNVRFGAIS-------QSALQVAAARGAEGSCSALMIAGADPNWIDYDDTVQLPSLLHLAGAA---GHHRVVRVILQYGA 168
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.370e-32
Identity = 93/166 (56.02%), Postives = 108/166 (65.06%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGC--HGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILD-HTQSPLHRAALSEEWGSIRVLSALL 915
            DRSR+DG EIE+F+LVK  AT KQ K WLR PLEHAAA GN++LFTRL+DA A G  GW+G     RTLLGAAA G+K   M+ ALL+AG T  VN  FG         RESALHV   RG+E  SKAL+ AGA  N+ +    SPLH AA   E G  RV+  LL
Sbjct:    9 DRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLEAGETEFVNTSFGAT-------RESALHVTVARGAEDASKALMMAGADPNLGNVDGDSPLHLAA---EAGHHRVIGILL 164
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 6.120e-31
Identity = 83/138 (60.14%), Postives = 99/138 (71.74%), Query Frame = 1 
Query:  433 RSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADA-DGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILD 840
            RSRLDG EIE+F+LV+   T +Q K WL+ PLEHAAA GN++LFTRLMDA    G  GWRGC+GRTLLGAAA G  D +++ ALL+AGA  DVNVLFG          +SALHVAA RG+E  SKAL+ AGA  N+ D
Sbjct:   12 RSRLDGFEIEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSD-KVVRALLEAGAGDDVNVLFGPEG-------KSALHVAAARGAEEASKALMVAGADPNLFD 141
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.660e-29
Identity = 84/164 (51.22%), Postives = 103/164 (62.80%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCK-WLRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILDHTQ-SPLHRAALSEEWGSIRVLSALL 915
            DRSRLDG EIE+F+LV+ GAT +Q K WLRAP EHAAA+GN++ FTRLMDA A+  AGWRGC+GRTLLGAAA G  + +M+   L AGAT DVNVLFG                          +AL+  GA  N+ D  + SPLH AA++   G  RV+  LL
Sbjct:   10 DRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSE-KMVRTTLTAGATDDVNVLFGGER-----------------------EALMIDGADPNVRDRRKRSPLHLAAVA---GHHRVVGMLL 146
[Close]
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Match: A0A6H5KWD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.780e-28
Identity = 80/152 (52.63%), Postives = 98/152 (64.47%), Query Frame = 1 
Query:  430 DRSRLDGCEIELFQLVKSGATPKQCKW-LRAPLEHAAADGNMELFTRLMDADADGSAGWRGCHGRTLLGAAAAGSKDGRMISALLDAGATPDVNVLFGRRTSFNGLGRESALHVAADRGSELISKALISAGAFTNILDHTQSPLHRAALSEE 882
            DRSRLDG E+E F+L +  AT  Q +  LRAPLEHAAA+GN +LF RL+DA ADG AGWR C GRTLL AAA G K+  +   +L AG   DVNV FG R       RESALHVA  +G++ IS  L+ AGA  N+LD        + L+E+
Sbjct:    8 DRSRLDGFELETFKLDE--ATSDQWRERLRAPLEHAAAEGNTDLFMRLLDAGADGIAGWRDCGGRTLLDAAAHG-KNEDIERTVLKAGVREDVNVCFGER-------RESALHVAVVQGADNISGKLLIAGADPNLLDGAGQSRFTSLLAED 149
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE9_ECTSI1.410e-4057.65Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LQE2_ECTSI2.230e-4057.23Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G692_ECTSI4.810e-3758.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQN0_ECTSI1.500e-3563.04Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LD22_ECTSI3.420e-3463.24MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY9_9PHAE4.090e-3350.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ92_ECTSI1.370e-3256.02Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LB27_ECTSI6.120e-3160.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE8.660e-2951.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWD3_9PHAE8.780e-2852.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:66729..69189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue8.9e-22
Seed eggNOG ortholog2880.D8LQN0
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size2461
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1435.1prot_C-linearis_contig110.1435.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 68003..68458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.7181225-UTR-C-linearis_contig110:66728..680021622927473.7181225-UTR-C-linearis_contig110:66728..68002Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 66729..68002 +
1690879721.969888-UTR-C-linearis_contig110:66728..680021690879721.969888-UTR-C-linearis_contig110:66728..68002Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 66729..68002 +
1622927473.7428708-UTR-C-linearis_contig110:68458..691891622927473.7428708-UTR-C-linearis_contig110:68458..69189Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 68459..69189 +
1690879721.9924247-UTR-C-linearis_contig110:68458..691891690879721.9924247-UTR-C-linearis_contig110:68458..69189Chordaria linearis ClinC8C monoicousUTRC-linearis_contig110 68459..69189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927473.7293289-CDS-C-linearis_contig110:68002..684581622927473.7293289-CDS-C-linearis_contig110:68002..68458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 68003..68458 +
1690879721.9825902-CDS-C-linearis_contig110:68002..684581690879721.9825902-CDS-C-linearis_contig110:68002..68458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 68003..68458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1435.1

>prot_C-linearis_contig110.1435.1 ID=prot_C-linearis_contig110.1435.1|Name=mRNA_C-linearis_contig110.1435.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MSTDFGQTALHHACEVCDEQGVEMLLRRGAQENLPDNDGRLPTNVVGDLV
SVRSNWDIGEEATMEIMQRIRRMLERAPADRAWCRRGWLVLCRFYPNRVN
SPYSPRSAKKLTGSEASRLQFDNFNGDVRQLVGNVIGLEADDVFRLVVRF
L*
back to top

mRNA from alignment at C-linearis_contig110:66729..69189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1435.1 ID=mRNA_C-linearis_contig110.1435.1|Name=mRNA_C-linearis_contig110.1435.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2461bp|location=Sequence derived from alignment at C-linearis_contig110:66729..69189+ (Chordaria linearis ClinC8C monoicous)
ACCAGCGGGCTTCGGGTGTACCGGCGCGTTTGTATCTCCGGTCCTCTATG
TTCCAGAAAGAGGTAGGAACCACAGCTGCTACTCTGTGCCAGTAAGGCTT
CCTCGGCTCGTCAACAGTAGACTAGTCCACTAGGAACGCAGACTGTATCG
CACCGTTTGTATGTACCGGTTGGCAGCCTCTCTCTCTCGCTCCCTTTCGC
TGTGTGTGTCCGAAGTCTATCGCACAACGACTTGTTGAGATTACATCTCG
GCAACCATGTAGATCTACTGCTGTAGGATATCGTTGTCCACCACTACTCT
TGTTTCGTTTGGCACGGCGAAAGGGGGTTTGTTTCCGTGCCTCAGCAGCT
GAAACCCTCTTGGGTTCTCAACTCAAATCTTCTTGGGCTTTTACAGAGCG
AAAGTACAATGCCAGGTGTCTAGACCCCAGACCGCTCACGCCTAGATGGG
TGCGAAATCGAGCTCTTCCAGCTGGTTAAGAGCGGAGCAACCCCAAAGCA
GTGCAAGTGGCTTCGAGCCCCGCTAGAGCACGCTGCGGCAGACGGCAACA
TGGAGCTCTTCACCAGGCTTATGGACGCTGATGCCGACGGCAGTGCAGGC
TGGCGCGGCTGCCACGGAAGAACGTTGCTCGGAGCAGCCGCCGCCGGCAG
CAAAGATGGACGAATGATATCGGCTCTCCTCGATGCAGGGGCTACGCCCG
ACGTGAACGTTCTGTTCGGTAGGAGGACATCCTTCAATGGACTGGGACGC
GAGTCGGCACTCCACGTGGCAGCGGATCGAGGCTCCGAGTTGATATCGAA
GGCTCTCATATCCGCTGGAGCTTTCACGAACATTCTGGACCACACCCAAT
CTCCGCTCCACCGAGCCGCTTTGTCCGAAGAATGGGGTAGCATCCGTGTC
CTGAGTGCACTCTTGAAACATGGCTCCGGGATGATGAAGGGTTAACAGCG
CTGCACCTCGCTGCCAGCGTCACATGCAACAGCGGCGACAAGGTCCGTAC
GTTGCTCGAAGCTGGCGCGGATATCGATGCGAATTCTTTTCCCAACTACG
AATACTGGTGGGATAGTGTGGGTGCATTTGCGCTTTTGATGCTACGCCTC
TGCACGCTGCAGTGCATCCCAATGGCGTACTGACTGGTGCGCTGCAAGCC
CTGTTGGAAGGAGGGGCAAACGTCCACGCGGAGACACATGACGGACGAAC
GGCGCTGCACATAGCCTGCTACCGTTCCAACGCCGCTGCTGCGGAGATCC
TGTTGCAGGGTGGGGCGGATATTAATGAGCACCGATTTTGGGCAGACGGC
ATTGCACCATGCTTGCGAGGTTTGCGACGAGCAAGGTGTGGAGATGCTGC
TACGTCGGGGTGCGCAGGAAAACCTCCCAGACAACGACGGAAGGCTGCCC
ACAAACGTCGTGGGCGACCTGGTTTCAGTTAGGTCCAACTGGGACATAGG
AGAAGAGGCTACGATGGAGATTATGCAGCGGATTCGCCGGATGCTGGAGC
GCGCCCCAGCCGACAGAGCATGGTGTCGACGGGGCTGGCTGGTGTTGTGC
CGCTTCTACCCGAACAGGGTGAACAGCCCCTACAGCCCTCGCTCTGCCAA
GAAGTTGACGGGAAGTGAGGCTTCTCGTCTTCAATTTGACAACTTCAATG
GGGACGTGAGACAGTTAGTAGGCAACGTGATCGGCCTGGAGGCAGACGAT
GTCTTCCGCTTGGTTGTGCGCTTCCTTTAGTTGAGGTGCGTCGTGTAAAG
CACGCAGCGCATGTGACACCTTGTCGCGTTTGTCTGTAGGTTGCCGGTTT
CTTTTTTTCGCTACTTTAGGTGCTCACTTTTTTCGCCGTATGGTACCTGT
TTTCCTGTGTTTGATGCGTACCCAACGTCGTGTACACCTGCCCTTGCGGT
GTTGGCAAAATATCGGGGTATTTTCGACGCTGATTCTGTTCCTGCCAGCT
CTATATTTGTAGGTAGGGATCAAGTGCATTGATTGGCGGAAAGCTGGGTT
GAGAGTCGTGAATCCGATCATTCCGGCGGTGACTTTATGCTCTTTGCGGA
GAGCGAAGGTGCGCGGTTACCCTGTTGAATATTTGCAGAGCTTCGATTCG
ATACATCCGCATGAGAAAATGGTGTGATGCGTATTTGCCGGAATTGTGTG
GTTCTCCAGACATTTGGGACCCAGAGGTAGAAGGGTAGTGAGTCGATTCG
ACCTGCCGTTTACGGATGACTTCGACTTTTTTTTATATCTTCTTCGGCGA
CAATCCGGTGTTTCCCCGCGGAAAGTTCCGTCCACATCTGCTTTTGCTTG
GAACTCGAAGTACGACAGCTTGTATCATCTGGTGGTGGCCTAATAGTTTC
CTTTTCCAAGCGACAATTTGTTGTACACTCGACAGCTCTGGTCTGCACTA
TATTGCGCAATTTTGGAGCAGAAATAATCGCAAATTTATTTCCTTACCTC
TCAGTCCAGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig110:66729..69189+

>mRNA_C-linearis_contig110.1435.1 ID=mRNA_C-linearis_contig110.1435.1|Name=mRNA_C-linearis_contig110.1435.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig110:66729..69189+ (Chordaria linearis ClinC8C monoicous)
ATGAGCACCGATTTTGGGCAGACGGCATTGCACCATGCTTGCGAGGTTTG
CGACGAGCAAGGTGTGGAGATGCTGCTACGTCGGGGTGCGCAGGAAAACC
TCCCAGACAACGACGGAAGGCTGCCCACAAACGTCGTGGGCGACCTGGTT
TCAGTTAGGTCCAACTGGGACATAGGAGAAGAGGCTACGATGGAGATTAT
GCAGCGGATTCGCCGGATGCTGGAGCGCGCCCCAGCCGACAGAGCATGGT
GTCGACGGGGCTGGCTGGTGTTGTGCCGCTTCTACCCGAACAGGGTGAAC
AGCCCCTACAGCCCTCGCTCTGCCAAGAAGTTGACGGGAAGTGAGGCTTC
TCGTCTTCAATTTGACAACTTCAATGGGGACGTGAGACAGTTAGTAGGCA
ACGTGATCGGCCTGGAGGCAGACGATGTCTTCCGCTTGGTTGTGCGCTTC
CTTTAGATGAGCACCGATTTTGGGCAGACGGCATTGCACCATGCTTGCGA
GGTTTGCGACGAGCAAGGTGTGGAGATGCTGCTACGTCGGGGTGCGCAGG
AAAACCTCCCAGACAACGACGGAAGGCTGCCCACAAACGTCGTGGGCGAC
CTGGTTTCAGTTAGGTCCAACTGGGACATAGGAGAAGAGGCTACGATGGA
GATTATGCAGCGGATTCGCCGGATGCTGGAGCGCGCCCCAGCCGACAGAG
CATGGTGTCGACGGGGCTGGCTGGTGTTGTGCCGCTTCTACCCGAACAGG
GTGAACAGCCCCTACAGCCCTCGCTCTGCCAAGAAGTTGACGGGAAGTGA
GGCTTCTCGTCTTCAATTTGACAACTTCAATGGGGACGTGAGACAGTTAG
TAGGCAACGTGATCGGCCTGGAGGCAGACGATGTCTTCCGCTTGGTTGTG
CGCTTCCTTTAG
back to top