mRNA_C-linearis_contig7.14459.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig7.14459.1
Unique NamemRNA_C-linearis_contig7.14459.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig7.14459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig7contigC-linearis_contig7:2227428..2228481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1054
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig7.14459.1prot_C-linearis_contig7.14459.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig7 2227521..2228288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.2803655-UTR-C-linearis_contig7:2227427..22275201622930278.2803655-UTR-C-linearis_contig7:2227427..2227520Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2227428..2227520 +
1690880989.2710133-UTR-C-linearis_contig7:2227427..22275201690880989.2710133-UTR-C-linearis_contig7:2227427..2227520Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2227428..2227520 +
1622930278.3163605-UTR-C-linearis_contig7:2228288..22284811622930278.3163605-UTR-C-linearis_contig7:2228288..2228481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2228289..2228481 +
1690880989.292747-UTR-C-linearis_contig7:2228288..22284811690880989.292747-UTR-C-linearis_contig7:2228288..2228481Chordaria linearis ClinC8C monoicousUTRC-linearis_contig7 2228289..2228481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930278.2943919-CDS-C-linearis_contig7:2227520..22282881622930278.2943919-CDS-C-linearis_contig7:2227520..2228288Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2227521..2228288 +
1690880989.2837868-CDS-C-linearis_contig7:2227520..22282881690880989.2837868-CDS-C-linearis_contig7:2227520..2228288Chordaria linearis ClinC8C monoicousCDSC-linearis_contig7 2227521..2228288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig7.14459.1

>prot_C-linearis_contig7.14459.1 ID=prot_C-linearis_contig7.14459.1|Name=mRNA_C-linearis_contig7.14459.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=256bp
MTCSARPCVVQNVGTCPSRLRQFVVATDSWPIHATPFFQNVALGLLCRRA
SCRGIVLEFCGIPARPVEAKPFDECNSSARVLVASVYVRTKLSLELRCSA
LTTACGRPLCSYSSPRTIWLAARAREQHQAGKSARTMCVFAGHSTSRCRS
CKHGHSVLVIPVFGSRHSFRPAPPCLLSRQHLSAVVRLAEWYVLFDCRSI
RPRRRRRSSGKPRGEITSSSQLQRAEALRRTKRTMSTPRRHRTSSLLWAL
WLGTK*
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mRNA from alignment at C-linearis_contig7:2227428..2228481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig7.14459.1 ID=mRNA_C-linearis_contig7.14459.1|Name=mRNA_C-linearis_contig7.14459.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1054bp|location=Sequence derived from alignment at C-linearis_contig7:2227428..2228481+ (Chordaria linearis ClinC8C monoicous)
CGGGCTCGGTATTCGTTGGTTGTTATTGCGGGTGTTGCAGACGAGATGTT
TCGCTGACCCACCGGCGTAGTTCTGGGGTAGATAAGGCATGTTATGACCT
GCAGCGCTCGTCCTTGCGTTGTGCAGAATGTTGGTACATGTCCTTCGAGA
CTGCGGCAGTTTGTTGTCGCTACAGATAGTTGGCCGATTCACGCCACGCC
TTTTTTTCAAAACGTTGCACTCGGCCTCTTGTGTAGGCGCGCGTCGTGTC
GAGGTATTGTGCTCGAGTTTTGTGGGATTCCGGCAAGACCGGTAGAGGCA
AAACCCTTCGACGAGTGCAATAGCAGTGCCCGCGTGCTGGTTGCAAGCGT
GTATGTACGCACAAAGCTTTCGCTAGAGTTGCGGTGCTCAGCACTCACTA
CGGCATGCGGCAGACCACTTTGCAGTTACTCTTCTCCGAGAACAATCTGG
CTCGCCGCCCGGGCGAGAGAGCAACACCAAGCCGGTAAAAGCGCACGAAC
AATGTGTGTGTTCGCCGGCCATTCCACCTCCCGCTGCCGGTCTTGCAAGC
ATGGTCATTCTGTGCTCGTTATTCCCGTGTTTGGATCACGTCACTCCTTT
CGCCCCGCCCCGCCTTGCCTCCTCTCACGCCAACACCTCTCGGCCGTCGT
GCGTCTTGCTGAATGGTATGTACTGTTTGATTGTCGATCGATCAGGCCGC
GAAGACGAAGAAGAAGCTCCGGCAAGCCAAGAGGAGAAATTACGTCGAGT
TCCCAGCTCCAGAGAGCTGAAGCTCTACGGAGAACAAAACGTACGATGTC
AACCCCAAGGCGTCATCGTACAAGCTCACTCTTGTGGGCCCTCTGGTTGG
GAACGAAATAGGGACGGAGAAAAAGTTGATTTCTATCTCGTTTTGAGTTG
CCGTTGTTTTTTCTTGGCCTCGCGGGTAAATTTTGCACAGACAGTAGCTG
AAATTTCACGGGTTTTTGGGTGCGTGCCAAGAGCGAGTTTAAGAAAATCA
AAAGCCTTCAATTTAAATAAGCGGGAGGGAAGTAACGTGAGCTGCGACTT
TTTT
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Coding sequence (CDS) from alignment at C-linearis_contig7:2227428..2228481+

>mRNA_C-linearis_contig7.14459.1 ID=mRNA_C-linearis_contig7.14459.1|Name=mRNA_C-linearis_contig7.14459.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at C-linearis_contig7:2227428..2228481+ (Chordaria linearis ClinC8C monoicous)
ATGACCTGCAGCGCTCGTCCTTGCGTTGTGCAGAATGTTGGTACATGTCC
TTCGAGACTGCGGCAGTTTGTTGTCGCTACAGATAGTTGGCCGATTCACG
CCACGCCTTTTTTTCAAAACGTTGCACTCGGCCTCTTGTGTAGGCGCGCG
TCGTGTCGAGGTATTGTGCTCGAGTTTTGTGGGATTCCGGCAAGACCGGT
AGAGGCAAAACCCTTCGACGAGTGCAATAGCAGTGCCCGCGTGCTGGTTG
CAAGCGTGTATGTACGCACAAAGCTTTCGCTAGAGTTGCGGTGCTCAGCA
CTCACTACGGCATGCGGCAGACCACTTTGCAGTTACTCTTCTCCGAGAAC
AATCTGGCTCGCCGCCCGGGCGAGAGAGCAACACCAAGCCGGTAAAAGCG
CACGAACAATGTGTGTGTTCGCCGGCCATTCCACCTCCCGCTGCCGGTCT
TGCAAGCATGGTCATTCTGTGCTCGTTATTCCCGTGTTTGGATCACGTCA
CTCCTTTCGCCCCGCCCCGCCTTGCCTCCTCTCACGCCAACACCTCTCGG
CCGTCGTGCGTCTTGCTGAATGGTATGTACTGTTTGATTGTCGATCGATC
AGGCCGCGAAGACGAAGAAGAAGCTCCGGCAAGCCAAGAGGAGAAATTAC
GTCGAGTTCCCAGCTCCAGAGAGCTGAAGCTCTACGGAGAACAAAACGTA
CGATGTCAACCCCAAGGCGTCATCGTACAAGCTCACTCTTGTGGGCCCTC
TGGTTGGGAACGAAATAGATGACCTGCAGCGCTCGTCCTTGCGTTGTGCA
GAATGTTGGTACATGTCCTTCGAGACTGCGGCAGTTTGTTGTCGCTACAG
ATAGTTGGCCGATTCACGCCACGCCTTTTTTTCAAAACGTTGCACTCGGC
CTCTTGTGTAGGCGCGCGTCGTGTCGAGGTATTGTGCTCGAGTTTTGTGG
GATTCCGGCAAGACCGGTAGAGGCAAAACCCTTCGACGAGTGCAATAGCA
GTGCCCGCGTGCTGGTTGCAAGCGTGTATGTACGCACAAAGCTTTCGCTA
GAGTTGCGGTGCTCAGCACTCACTACGGCATGCGGCAGACCACTTTGCAG
TTACTCTTCTCCGAGAACAATCTGGCTCGCCGCCCGGGCGAGAGAGCAAC
ACCAAGCCGGTAAAAGCGCACGAACAATGTGTGTGTTCGCCGGCCATTCC
ACCTCCCGCTGCCGGTCTTGCAAGCATGGTCATTCTGTGCTCGTTATTCC
CGTGTTTGGATCACGTCACTCCTTTCGCCCCGCCCCGCCTTGCCTCCTCT
CACGCCAACACCTCTCGGCCGTCGTGCGTCTTGCTGAATGGTATGTACTG
TTTGATTGTCGATCGATCAGGCCGCGAAGACGAAGAAGAAGCTCCGGCAA
GCCAAGAGGAGAAATTACGTCGAGTTCCCAGCTCCAGAGAGCTGAAGCTC
TACGGAGAACAAAACGTACGATGTCAACCCCAAGGCGTCATCGTACAAGC
TCACTCTTGTGGGCCCTCTGGTTGGGAACGAAATAG
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