mRNA_C-linearis_contig11.1215.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1215.1
Unique NamemRNA_C-linearis_contig11.1215.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: D8LGH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH3_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.260e-98
Identity = 185/347 (53.31%), Postives = 225/347 (64.84%), Query Frame = 1
Query:  241 SEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKA-----LAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPG-DSSAGSPQP------NGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLA-VEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHLLNL 1242
            SEEISGQRLWEGSLLLCAYLVE C N  S   +G+  +  G    KLD  GKSVLELGAGTG+V MLA +LGA  +++TDGDDKCV MAQKNI++N++  ++A V  LRWG+ ESTT FC +FSEW++R     G+   +GVA A       AA A     + G  A+   G   +     G      A ++  G D + G P P      +  SPL+SFDFILAGDVLYK  LL PFL TVRDMLA+GGRMLLCH+PRAGVTYDIVE A  +AGFAFEILNGD K+      S G +      G + A  E A G  CD   VGG++LCVDDARRARLY++H ++L
Sbjct:    4 SEEISGQRLWEGSLLLCAYLVEVCRNEDSNSSAGDCCR--GMGKPKLDLQGKSVLELGAGTGIVGMLAAKLGAQTLILTDGDDKCVAMAQKNIQDNDVPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPTKSLAAGAQDKASVPGDVAVCAHGHSPNASSGNGHLNEDPASTSCEGQDRNVGPPPPPRDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLRTVRDMLAAGGRMLLCHIPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHSSGGEGGGKDVGRADAPTEGAAGGHCDAPDVGGIELCVDDARRARLYELHSVDL 348          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A835YP02_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP02_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.560e-24
Identity = 125/412 (30.34%), Postives = 174/412 (42.23%), Query Frame = 1
Query:   97 EYDLDYDVQEVRLLDHV------FKVTTVANEALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVET-------------GVDTAAKALAGGTALPPSGTRRSEVLEAGQTPA-----------VVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLG--PFLGTVRDMLASGGR-MLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLAVEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHL 1233
            E DL+Y+ Q V +           KVT++ANEALPLEML+ L+ R+          EISGQRLWEGSLLLC +++ H ++                        GK VLELGAG G+V +   +LGA+ V +TDGD KC+ +  +NI  N ++A  A  AVL+WG+  +         ++     A +   + + VA  + T             G+  AA    GG  +P +   R    E+G + +            VA   A  D  A     + +  LE+     A             P  G  R    S  R +LLCH+PRAGV +  V  AL E                        + P GG   SLAV A  G       V G  +C DD  RA++Y + L
Sbjct:    5 ESDLEYEEQTVTVGSEASGRQMTLKVTSLANEALPLEMLLALEARK---------HEISGQRLWEGSLLLCNHVIAHFAH---------------------AIVGKRVLELGAGCGIVGLTCAKLGAAEVYITDGDAKCLPLIGQNITANNLSA-VAKAAVLKWGNAAALAALSPLPFDFVV---AGDVLYKKELVAPLLSTVRAALRWPPCSQLGLGLAAAGAPGGRQVPSASDSRVASSESGVSTSGXXXXXXXXXXXVATGVAGADV-ATLRAADKQDSLEAAGASAAXXXXXXXXXXXXXPAAGATRQRHGSSDRGLLLCHIPRAGVEHCQVAAALREL-----------------------RAPPGGGARSLAVSAGDGG-----GVAGTAVCDDDVARAQVYALLL 353          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A1V9YS28_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS28_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.270e-19
Identity = 82/271 (30.26%), Postives = 107/271 (39.48%), Query Frame = 1
Query:  235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVV-MAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
            + S EISGQR+W GS LL  YL                        +K    GK  LELGAGTG+VS++A   GA+ +V TDGD + V  +   N++ N   A       L WGD  S T F + F                                    G+AL                                            FD +LAGDVLYK  L+   L +V+  L S G  LLCH+PRA V++D++++AL   GFAF I
Sbjct:   53 ATSSEISGQRIWPGSYLLAEYL----------------------HANKDLVAGKRTLELGAGTGLVSLVARLDGAASLVATDGDLEVVNDILTWNVQTNAPDATNLHTTSLWWGDEASNTAFAERF------------------------------------GSAL--------------------------------------------FDRVLAGDVLYKGELVPLLLASVKTWLKSDGTFLLCHIPRADVSHDVLQSALAAHGFAFGI 221          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A067BSN2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSN2_SAPPC)

HSP 1 Score: 98.2 bits (243), Expect = 3.160e-19
Identity = 81/271 (29.89%), Postives = 107/271 (39.48%), Query Frame = 1
Query:  235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTG-KSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCV--VMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAF 1038
            + S EISGQR+W GS LL  YL  H                       +D    K VLELGAGTG+ S+++   GA+ +V TDGD + V  V+A  N++ N   A     A L WGD  S  +F + F +                                                                           GR     FD ++AGDVLYK  L+   L TVR  LA  GR +LCH+PRA V++D+++ AL   GF F
Sbjct:   53 ATSSEISGQRIWPGSYLLAEYLHAH-----------------------VDIVAAKRVLELGAGTGLASLVSRLAGATDLVATDGDLEVVNDVLAW-NVQSNAPDATNLHTASLWWGDAASNASFAERFGD---------------------------------------------------------------------------GR-----FDVLIAGDVLYKGELVQLLLSTVRTWLAPHGRFVLCHIPRADVSHDVLQAALTAHGFRF 219          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A7S2XZT6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZT6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.790e-19
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  178 LPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTF 597
            LPLE+L  L+ R+         +EISG+RLW GS +L  +++      + G+               L F+GK+V+ELGAGTGV  MLA  LGA  V++TDGD +CV   ++N+++N +       A L WGD ES  +F
Sbjct:    3 LPLEVLADLESRK---------DEISGRRLWSGSTILAHFMINISEATAIGR--------------SLSFSGKNVVELGAGTGVCGMLARYLGAQKVLITDGDKECVNFIKENLQDNSMDDGSCTAAHLFWGDRESMASF 119          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A6G0WHQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHQ3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.620e-17
Identity = 88/356 (24.72%), Postives = 129/356 (36.24%), Query Frame = 1
Query:  175 ALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVV-MAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGSSLAVEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHLLN 1239
            A  L ML ++ E  S         EISGQR+W GS LL  ++ EH            E   N           K VLELGAGTG+VS++A+  G    + TDGD   V  + + N++ N   ++    A L WGDN S+  F   F +                                                                                E FD ++AGDVLYK  L+   L TV++ L   G  +LCH+PRA V++++++  L   GF + +L                             EAAQ  R         D  +DD ++A++Y + + +
Sbjct:   36 AASLSMLTEMTETTS---------EISGQRIWPGSYLLAEFVHEHP-----------ELVAN-----------KRVLELGAGTGLVSLVANLAGTRAAIATDGDMSVVTDILEWNVQHNAPPSSTIDTASLWWGDNSSSGEFRRRFGD--------------------------------------------------------------------------------ELFDIVVAGDVLYKGELVPLLLTTVKEWLHPEGIFVLCHIPRADVSHEVLQRELTSHGFKWTLLQ----------------------------EAAQAGRLPE------DCSMDDVKKAKVYRIEIFH 246          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A024GNH1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNH1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.620e-16
Identity = 83/318 (26.10%), Postives = 117/318 (36.79%), Query Frame = 1
Query:  109 DYDVQEVRLLDHVFKVTTVANEALPLEMLMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGR------MLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
            +Y+V+EV +  H   V  +   +L  +M   L E  S         EISG R+W GSL L  YL  H                           G   LELGAGTG+ S++A +LGA   + TDGDD+ V +  +N++ N+ A +     VL WGD +S T FC  F + +++                                                                               + ILA DVLYK  L+     +V    +           LLCHVPRA V++D+VE AL  A F + +
Sbjct:   11 EYEVKEVSIGMHTLFVYQMRELSLD-DMFAMLSEMDS------KQTEISGTRIWTGSLALSHYLFMHAD----------------------ILQGACTLELGAGTGMCSIVAKKLGAETCIATDGDDRVVQILTRNVQLNKEAVH---AHVLSWGDAKSHTQFCTEFPDLKSK------------------------------------------------------------------------------LNLILAADVLYKAMLIPLLFNSVEFFFSDSSDSEQSRLFLLCHVPRAEVSHDMVEKALKAARFEYSV 218          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A1V9ZFX3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFX3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.950e-16
Identity = 76/272 (27.94%), Postives = 106/272 (38.97%), Query Frame = 1
Query:  235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCV--VMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCHVPRAGVTYDIVETALVEAGFAFEI 1044
            + S EISGQR+W GS LL  Y+                        +K     K VLELGAGTG+VS++A   GA+ VV TDGD + V  ++A  NI  N  A      A L WG++ S+  F + F +                                                                                + FD I+AGDVLYK  L+   L +V++ L   G  +LCH+PRA V++++++ AL E   AF I
Sbjct:   52 ATSSEISGQRIWPGSYLLAEYV----------------------HANKDLVANKRVLELGAGTGLVSLVAQIAGATNVVATDGDVEVVKEILAW-NIANNAKADGNVKAASLFWGNSTSSAAFQEQFGK--------------------------------------------------------------------------------DLFDVIVAGDVLYKGELIPLLLASVKEWLQPNGIFVLCHIPRADVSHEVLQKALTEQNMAFAI 220          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: D0P1I8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P1I8_PHYIT)

HSP 1 Score: 89.4 bits (220), Expect = 4.410e-16
Identity = 79/273 (28.94%), Postives = 104/273 (38.10%), Query Frame = 1
Query:  235 SNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRM----LLCHVPRAGVTYDIVETALVEAGFAFE 1041
            +N  EISG RLW GS  L  YL  H                      +L   GK VLELGAGTG+ S+++ +LGA   + TDGD++ V +  KN++ NE A +      L WGD  S  T    F                                                                 PG              L   D +LAGDVLYK  LL     TV  +LAS   +    +LCH+PRA VT+D+V+  ++ +G  FE
Sbjct:   58 ANVTEISGTRLWTGSHFLSRYLWRH---------------------PEL-VRGKRVLELGAGTGICSIVSSKLGAVKCLATDGDEEVVELLAKNVQVNE-AEDVVTARSLFWGDEPSAQTLLKEF-----------------------------------------------------------------PG-------------ALTDVDVVLAGDVLYKSELLPLLFATVTRVLASDDDVERAFVLCHIPRAEVTHDLVQKQIINSGLNFE 229          
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Match: A0A662WUX6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUX6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.300e-16
Identity = 90/316 (28.48%), Postives = 123/316 (38.92%), Query Frame = 1
Query:  106 LDYDVQEVRLLDHVFKVTTVANEALPLEM-LMQLQERRSGGVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGARTSKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIEENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVALAVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSAGSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGR---MLLCHVPRAGVTYDIVETALVEAGFAFE 1041
            ++Y+ + V + D   +V     E LP+   L  L E  +      N+ EISG RLW GS  L  YL  H                      +L   GK VLELGAGTG+ S++A +LGA+  + TDGD + V +  KN+E N  A +      L WGD  ST T                                                    +E+ +A                              + D +LAGDVLYK+ LL     TV  +LAS       +LCHVPRA VT+D+V+  +  +G  FE
Sbjct:   42 VEYETKRVAVGD--LEVQVFQMEELPVAASLFMLAEMDA------NAAEISGTRLWTGSHFLSRYLWRH---------------------PEL-VRGKRVLELGAGTGICSIVAFKLGAARCLATDGDAEVVELLAKNVEVNG-AVDVVTARSLFWGDEASTETLL--------------------------------------------------AEIPDA----------------------------FAATDVVLAGDVLYKRELLPLLFATVTRVLASSDSNRAFVLCHVPRADVTHDVVQQQIEASGLQFE 248          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGH3_ECTSI1.260e-9853.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YP02_9STRA1.560e-2430.34Putative methyltransferase-domain-containing prote... [more]
A0A1V9YS28_9STRA1.270e-1930.26Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067BSN2_SAPPC3.160e-1929.89Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2XZT6_9STRA8.790e-1938.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0WHQ3_9STRA9.620e-1724.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024GNH1_9STRA1.620e-1626.10Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1V9ZFX3_9STRA1.950e-1627.94Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
D0P1I8_PHYIT4.410e-1628.94Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662WUX6_9STRA6.300e-1628.48Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1065461..1069153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue3.1e-18
Seed eggNOG ortholog112098.XP_008609916.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase activity, acting on L-amino acid peptides
EggNOG OGsCOG3897@1,KOG2920@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-16_004030.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2124
Cds size1194
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1215.1prot_C-linearis_contig11.1215.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1066319..1069081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927439.8768644-UTR-C-linearis_contig11:1065460..10663181622927439.8768644-UTR-C-linearis_contig11:1065460..1066318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1065461..1066318 -
1690879701.2637677-UTR-C-linearis_contig11:1065460..10663181690879701.2637677-UTR-C-linearis_contig11:1065460..1066318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1065461..1066318 -
1622927439.9390604-UTR-C-linearis_contig11:1069081..10691531622927439.9390604-UTR-C-linearis_contig11:1069081..1069153Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1069082..1069153 -
1690879701.3127258-UTR-C-linearis_contig11:1069081..10691531690879701.3127258-UTR-C-linearis_contig11:1069081..1069153Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1069082..1069153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927439.8902433-CDS-C-linearis_contig11:1066318..10670181622927439.8902433-CDS-C-linearis_contig11:1066318..1067018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1066319..1067018 -
1690879701.2741742-CDS-C-linearis_contig11:1066318..10670181690879701.2741742-CDS-C-linearis_contig11:1066318..1067018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1066319..1067018 -
1622927439.9012094-CDS-C-linearis_contig11:1067276..10673511622927439.9012094-CDS-C-linearis_contig11:1067276..1067351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1067277..1067351 -
1690879701.2823043-CDS-C-linearis_contig11:1067276..10673511690879701.2823043-CDS-C-linearis_contig11:1067276..1067351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1067277..1067351 -
1622927439.9124343-CDS-C-linearis_contig11:1067820..10680691622927439.9124343-CDS-C-linearis_contig11:1067820..1068069Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1067821..1068069 -
1690879701.2943046-CDS-C-linearis_contig11:1067820..10680691690879701.2943046-CDS-C-linearis_contig11:1067820..1068069Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1067821..1068069 -
1622927439.9259942-CDS-C-linearis_contig11:1068911..10690811622927439.9259942-CDS-C-linearis_contig11:1068911..1069081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1068912..1069081 -
1690879701.3045979-CDS-C-linearis_contig11:1068911..10690811690879701.3045979-CDS-C-linearis_contig11:1068911..1069081Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1068912..1069081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1215.1

>prot_C-linearis_contig11.1215.1 ID=prot_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=398bp
MRAIRPLQEYDLDYDVQEVRLLDHVFKVTTVANEALPLEMLMQLQERRSG
GVPVSNSEEISGQRLWEGSLLLCAYLVEHCSNNSSGKGSGNETKINGART
SKLDFTGKSVLELGAGTGVVSMLAHRLGASPVVMTDGDDKCVVMAQKNIE
ENEIAANEAFVAVLRWGDNESTTTFCDNFSEWETRWPAREGNSENDGVAL
AVETGVDTAAKALAGGTALPPSGTRRSEVLEAGQTPAVVARSAAPGDSSA
GSPQPNGRSPLESFDFILAGDVLYKQCLLGPFLGTVRDMLASGGRMLLCH
VPRAGVTYDIVETALVEAGFAFEILNGDQKKRSGGSCSKGDQDPEGGTGS
SLAVEAAQGSRCDTTAVGGVDLCVDDARRARLYDVHLLNLCDTPFRG*
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mRNA from alignment at C-linearis_contig11:1065461..1069153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1215.1 ID=mRNA_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3693bp|location=Sequence derived from alignment at C-linearis_contig11:1065461..1069153- (Chordaria linearis ClinC8C monoicous)
TTATGACGTTATCTTATGACGTCATAACCTTTGCTCGCAGCCGACCTCTG CTCTGCCATCTCGGACGGCGGCATGCGTGCAATCAGACCTCTGCAAGAGT ACGATCTGGACTATGACGTGCAAGAAGTGCGGCTATTGGATCACGTGTTC AAAGTCACCACGGTCGCCAATGAGGCCCTGCCCCTTGAAATGCTGATGCA GCTCCAGGAGCGCAGGTCTGGCGGTGTACCGGTGTCCAACAGGCAAATAC CCCTCGCAACTTTAGTGTCACGGGGTGCGGCTGAGATTCGAGGCTCAGGG CCCTCTGCTCTCGTTATTTGAGAATGACGTATCGCCTTACCAGCCAAGCG AGCAAGCTTGATTGACTCCGTTGCTATTGGAGTTGCCTTTGGTGCTCTGA TTACAAGATTTGGTGCCGCTGGTGCCCGTCCCTGCTGTTGACATGAGATA ATGCGGCGGGAACCCATGTGTGTGTGTGCGTGTTTTCGTCCCATTTATTT TGGCGACAGCAGTCCCTTCCGATCAAGGCGAGACGTGTACTACACGTTGC GGTGTATTTAGAGTACTACACTTGTTCAGTGCATTTTTCTGTACAACTAC GGTAGGACCAACCGGGGTCACACAGGAGGGGGTAAGCACTGGGGCTTTTT TCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTCCTTGC CTTGGATTTTATCGCGAGAAGGGTGCAGCTATCCCTTTCCCTCGTCAACG TGCTAAGTCGAAGTTTGGTACTCACGGGCTTAATCAGCTATGTTATCGCT TTCACCGGCAAAGTCTCAAAATAATCACCTTTGCTTGGAATTGAACTCCA GACTTTGCTGCTAGTGGGTTCGAGGTTAACCCACTAGTCTAGTTGAAAGA ACGAACCAGGAATTGACGCGCTGTGGATATCGCACCAAAGCTTTCTTGTT TGGACAGCAACGATGACTGACTTAAAATTAAAAATCACCCGCCGACGAAA ACATTAGCTTGAACGCCTCGCTCGCTCTCTCTCTCGCTGCTCCCCACCCT CACCGCCAACCTATCCACACACCTGCCAACACAGCGAGGAAATCAGCGGG CAGCGGCTTTGGGAAGGCTCTCTCTTGTTGTGCGCCTACCTTGTGGAACA TTGTTCCAACAACAGCAGCGGCAAGGGCAGCGGCAACGAGACCAAAATAA ACGGCGCAAGAACCTCCAAGCTGGACTTTACCGGGAAATCCGTTCTGGAG CTCGGCGCCGGAACCGGCGTCGTGAGCATGCTTGCGCACAGGCTGGGCGC GTCGCCTGTGGTCATGACGGACGGGGATGACAAGTGAGGGGGTGTCAGGG AGGAGAAAGAAAGATAAAACAAGATACATATGCAGTGGAAGATGCAACAT GTCCACCCAAGAGGGGGCGGGGGAAGGAGGGGGAAGGGACAGCCCCAAAC GTGCGCGTCGCTTGTACCTGGTACTTCGTATGGAGGTTGTCGCTGCCTAC TACTTAGAGGCTCGAATTGGGCGCTCTCTGGCGCAATGGCGCAAACGATC GCGCAGCATCCTTGCAACCCAAGGCCTTTCGTTGCAATCAACTTCACATG CGACGAGACGTTGTTGGTGGTGGTGCTTTCCATGCTCGCGCCACCGGTAG TACTTTGCTAGACATACATACGAAGTATGCCCCCCAAGCGTGTACTAGAG ACGAGAGAAACTTTTCGGTATGGAGAGTGGCACCACACGCCCTCCCGGTG TCAGCCGACTGCATGGCTCCGTCCGGTTTCCTTGTTTTTTTTTGTGCACC AGGTGCGTCGTGATGGCGCAGAAGAACATCGAGGAGAACGAGATTGCTGC AAATGAGGCGTTCGTCGCAGTGCTTCGGTGAGTAGTCAGTCAAACCGGTT AACTGTTGGGTGGTTTCTAATAGCCAGCTTTCGGTGGTCTCCTTTGCCTT TGTTTTACCCCAAGCCTAGTTGGGGGGAAGTGAAATACCAGCTGGACGAT GCAAATGCACGCCGGTATACGATCGTCTGTTGTGATCCGCAATGCCGCCC AAAAGCCTCAATGCTTTTTCCGCCACGTTCGTCGTGGCCACTATCACACC ATCGTTTTCTCTGGTCTACTGCTGCCGCTTGACAGGTGGGGCGACAACGA ATCAACCACCACCTTCTGCGACAATTTTTCTGAGTGGGAAACGCGGTGGC CTGCCAGGGAGGGCAACAGCGAGAACGATGGGGTAGCATTAGCAGTGGAG ACTGGTGTAGACACAGCGGCAAAAGCGTTAGCTGGAGGAACCGCGTTGCC ACCGTCCGGTACAAGAAGAAGCGAGGTTCTCGAAGCGGGCCAGACACCCG CCGTTGTTGCTCGTTCGGCGGCACCAGGAGACAGCAGTGCGGGGTCGCCA CAGCCCAACGGCCGATCACCGCTGGAGTCCTTCGACTTCATCCTTGCGGG AGACGTGCTGTACAAGCAATGCCTTCTTGGCCCGTTCCTTGGAACGGTCC GCGACATGCTGGCATCGGGCGGCCGGATGCTTCTGTGCCACGTCCCCAGA GCCGGGGTTACCTACGACATTGTGGAGACGGCGCTCGTTGAGGCAGGGTT CGCGTTTGAGATTCTGAACGGGGATCAGAAGAAGAGGAGCGGCGGGAGCT GTAGTAAGGGGGATCAGGATCCAGAGGGTGGTACCGGGTCGAGTTTGGCG GTAGAGGCTGCCCAGGGGAGTCGGTGTGATACCACGGCTGTCGGGGGCGT CGACTTGTGTGTTGATGATGCGCGACGAGCTCGGTTGTACGACGTGCATT TGTTGAATTTGTGTGACACACCTTTCAGAGGGTAGTGGTATGATCGGCGT CGTGGACCCCCCCTGCTCTCGCCTAGTGCAGGTGCACCCTTGTTGTTGCA TTCTTGACGTCCAATTGCACAGGAAGTTGGCTGATGATGAGCAAGCATCA CGAAACTATGTCATGCATACAAACACTCTGCGGGTGTTCCCCACTCCATC CATGGGAGTCGGCAATGCAATTTCGTACGCTCGGCCGTTGTTTCTACTTC ACTCGACTGAGAAAGGGGATGGGTGGGAAAGATAGAACGATGGCCTGTCA AGTCCTTCGGGATTTTTCGATGATGATGCGTTTTAAGTCAGACATAGGCA CACACGACGCAAACATCCATGAACCGGAGGAGGGGCGTAGACTGGTGTTG CAGAAACTTGCGTGTGCAAAGAACTAACTGGGCCTAAACAAGTCTTCCAC CGAAGCAACTACTAATTGTAACAGGCAGGGCCAGGTATCAAACGACTCGC TCCACTCCTTCAACCAAAGCAAAAAACGCTCAATCAACACCACCACACCA GTAGGCACTGGTTCTCTTGCACCGACGTTTCTGTTGGAGCTTGAGCGCGC GTTCTGAAGGCCAAAACACAAAACACATGAATGCTCCGCACGTTGAACCC TCAGAAGAGATCGTTCGCTACTTTCGTAGGGAGCCGAAGCATTTTGTTGT TGGCGCCTGTAGAGCGACTTATTCGATATACTTCTTATACTTCGTATATG CTTTAGGTCACATTCTGTGTGTTTCATTCCTTCGCAAAACGGGCCCTGTA AGTGGGGATGATGTACCCCAACACCCTCTTACATCGCAACGTTGGCGGCA CTTAGGCAGGGTGACCCGTACTGCGCCCCATTCGATTGGAAAT
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Coding sequence (CDS) from alignment at C-linearis_contig11:1065461..1069153-

>mRNA_C-linearis_contig11.1215.1 ID=mRNA_C-linearis_contig11.1215.1|Name=mRNA_C-linearis_contig11.1215.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at C-linearis_contig11:1065461..1069153- (Chordaria linearis ClinC8C monoicous)
ATGCGTGCAATCAGACCTCTGCAAGAGTACGATCTGGACTATGACGTGCA
AGAAGTGCGGCTATTGGATCACGTGTTCAAAGTCACCACGGTCGCCAATG
AGGCCCTGCCCCTTGAAATGCTGATGCAGCTCCAGGAGCGCAGGTCTGGC
GGTGTACCGGTGTCCAACAGATGCGTGCAATCAGACCTCTGCAAGAGTAC
GATCTGGACTATGACGTGCAAGAAGTGCGGCTATTGGATCACGTGTTCAA
AGTCACCACGGTCGCCAATGAGGCCCTGCCCCTTGAAATGCTGATGCAGC
TCCAGGAGCGCAGGTCTGGCGGTGTACCGGTGTCCAACAGCGAGGAAATC
AGCGGGCAGCGGCTTTGGGAAGGCTCTCTCTTGTTGTGCGCCTACCTTGT
GGAACATTGTTCCAACAACAGCAGCGGCAAGGGCAGCGGCAACGAGACCA
AAATAAACGGCGCAAGAACCTCCAAGCTGGACTTTACCGGGAAATCCGTT
CTGGAGCTCGGCGCCGGAACCGGCGTCGTGAGCATGCTTGCGCACAGGCT
GGGCGCGTCGCCTGTGGTCATGACGGACGGGGATGACAACGAGGAAATCA
GCGGGCAGCGGCTTTGGGAAGGCTCTCTCTTGTTGTGCGCCTACCTTGTG
GAACATTGTTCCAACAACAGCAGCGGCAAGGGCAGCGGCAACGAGACCAA
AATAAACGGCGCAAGAACCTCCAAGCTGGACTTTACCGGGAAATCCGTTC
TGGAGCTCGGCGCCGGAACCGGCGTCGTGAGCATGCTTGCGCACAGGCTG
GGCGCGTCGCCTGTGGTCATGACGGACGGGGATGACAAGTGCGTCGTGAT
GGCGCAGAAGAACATCGAGGAGAACGAGATTGCTGCAAATGAGGCGTTCG
TCGCAGTGCTTCGGTGCGTCGTGATGGCGCAGAAGAACATCGAGGAGAAC
GAGATTGCTGCAAATGAGGCGTTCGTCGCAGTGCTTCGGTGGGGCGACAA
CGAATCAACCACCACCTTCTGCGACAATTTTTCTGAGTGGGAAACGCGGT
GGCCTGCCAGGGAGGGCAACAGCGAGAACGATGGGGTAGCATTAGCAGTG
GAGACTGGTGTAGACACAGCGGCAAAAGCGTTAGCTGGAGGAACCGCGTT
GCCACCGTCCGGTACAAGAAGAAGCGAGGTTCTCGAAGCGGGCCAGACAC
CCGCCGTTGTTGCTCGTTCGGCGGCACCAGGAGACAGCAGTGCGGGGTCG
CCACAGCCCAACGGCCGATCACCGCTGGAGTCCTTCGACTTCATCCTTGC
GGGAGACGTGCTGTACAAGCAATGCCTTCTTGGCCCGTTCCTTGGAACGG
TCCGCGACATGCTGGCATCGGGCGGCCGGATGCTTCTGTGCCACGTCCCC
AGAGCCGGGGTTACCTACGACATTGTGGAGACGGCGCTCGTTGAGGCAGG
GTTCGCGTTTGAGATTCTGAACGGGGATCAGAAGAAGAGGAGCGGCGGGA
GCTGTAGTAAGGGGGATCAGGATCCAGAGGGTGGTACCGGGTCGAGTTTG
GCGGTAGAGGCTGCCCAGGGGAGTCGGTGTGATACCACGGCTGTCGGGGG
CGTCGACTTGTGTGTTGATGATGCGCGACGAGCTCGGTTGTACGACGTGC
ATTTGTTGAATTTGTGTGACACACCTTTCAGAGGGTAGGTGGGGCGACAA
CGAATCAACCACCACCTTCTGCGACAATTTTTCTGAGTGGGAAACGCGGT
GGCCTGCCAGGGAGGGCAACAGCGAGAACGATGGGGTAGCATTAGCAGTG
GAGACTGGTGTAGACACAGCGGCAAAAGCGTTAGCTGGAGGAACCGCGTT
GCCACCGTCCGGTACAAGAAGAAGCGAGGTTCTCGAAGCGGGCCAGACAC
CCGCCGTTGTTGCTCGTTCGGCGGCACCAGGAGACAGCAGTGCGGGGTCG
CCACAGCCCAACGGCCGATCACCGCTGGAGTCCTTCGACTTCATCCTTGC
GGGAGACGTGCTGTACAAGCAATGCCTTCTTGGCCCGTTCCTTGGAACGG
TCCGCGACATGCTGGCATCGGGCGGCCGGATGCTTCTGTGCCACGTCCCC
AGAGCCGGGGTTACCTACGACATTGTGGAGACGGCGCTCGTTGAGGCAGG
GTTCGCGTTTGAGATTCTGAACGGGGATCAGAAGAAGAGGAGCGGCGGGA
GCTGTAGTAAGGGGGATCAGGATCCAGAGGGTGGTACCGGGTCGAGTTTG
GCGGTAGAGGCTGCCCAGGGGAGTCGGTGTGATACCACGGCTGTCGGGGG
CGTCGACTTGTGTGTTGATGATGCGCGACGAGCTCGGTTGTACGACGTGC
ATTTGTTGAATTTGTGTGACACACCTTTCAGAGGGTAG
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