mRNA_C-linearis_contig11.1199.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A7S0CJ29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJ29_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 3.970e-10 Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 34 DRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPHATGRGKRIVIVHAITEDGALVTNDGDG 285
DR IR Y++ AIKK +K+ H+ V+MD+SYIH +H ++K F+K + + +G+R+VI+HAIT+DG L + D G
Sbjct: 66 DRINLIRGYLVKFADAIKK--EKNGTHVCVYMDESYIHTNHSIRKGFYKEDQRAN-RSNSKGRRLVILHAITQDGPLCSIDETG 146
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 6.830e-6 Identity = 30/93 (32.26%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 25 VTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGALVTNDGDGY 288
+ +DRKARIR +++++ A+ ++ + +IV+MD+S+ H H S+F +N +G+G R+++VHAIT+ GAL D + +
Sbjct: 237 LNDDRKARIRRFLVEMSAAL--TQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNF 327
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 50.8 bits (120), Expect = 3.400e-5 Identity = 29/93 (31.18%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 25 VTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGALVTNDGDGY 288
+ +DRKARIR +++++ A+ ++ + +IV+MD+S+ H H S+F ++ +G+G R+++VHAIT+ GAL D + +
Sbjct: 237 LNDDRKARIRRFLVEMSAAL--TQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNF 327
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A815RDU5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815RDU5_9BILA) HSP 1 Score: 50.4 bits (119), Expect = 4.260e-5 Identity = 26/81 (32.10%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
+D++ RIR+++ID A+K + ++I +MD+SY++ H + +++ A + N TG+G R++I+HA+T+ G L
Sbjct: 208 QDKRPRIRQFIIDYANALKAEEHGN--NVIAYMDESYVNTRHALNGTWYDASQPIGNKLIRGTGKGARLIIIHAMTKYGLL 286
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A819LEY8_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819LEY8_9BILA) HSP 1 Score: 50.4 bits (119), Expect = 4.460e-5 Identity = 26/81 (32.10%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
+D++ RIR+++ID A+K + ++I +MD+SY++ H + +++ A + N TG+G R++I+HA+T+ G L
Sbjct: 304 QDKRPRIRQFIIDYANALKAEEHGN--NVIAYMDESYVNTRHALNGTWYDASQPIGNKLIRGTGKGARLIIIHAMTKYGLL 382
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A817Y2J9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817Y2J9_9BILA) HSP 1 Score: 50.4 bits (119), Expect = 4.600e-5 Identity = 28/81 (34.57%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
+D+ RIR+++ID A+K + IIV+MD+SY++ H + +++ + + N TG+G R++I+HAIT+ G L
Sbjct: 208 QDKTPRIRQFIIDYANALKAETHGNS--IIVYMDESYVNTRHALNGTWYDSSQPIGNKLIRGTGKGARLIIIHAITKYGLL 286
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 49.7 bits (117), Expect = 8.690e-5 Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 34 DRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGAL 264
+R ARIR +++++ A K+A D L +IV+MD+S++H H S+F + EN TG+G R+++VHAIT+ G L
Sbjct: 276 ERLARIRRFLVEMDMA-KRAEDAGLA-VIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPL 355 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1199.1 >prot_C-linearis_contig11.1199.1 ID=prot_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp MEEKTGYQVTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLback to top mRNA from alignment at C-linearis_contig11:908696..908983+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1199.1 ID=mRNA_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at C-linearis_contig11:908696..908983+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:908696..908983+ >mRNA_C-linearis_contig11.1199.1 ID=mRNA_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig11:908696..908983+ (Chordaria linearis ClinC8C monoicous)back to top |