mRNA_C-linearis_contig11.1199.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1199.1
Unique NamemRNA_C-linearis_contig11.1199.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A7S0CJ29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJ29_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.970e-10
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   34 DRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPHATGRGKRIVIVHAITEDGALVTNDGDG 285
            DR   IR Y++    AIKK  +K+  H+ V+MD+SYIH +H ++K F+K  +     +  +G+R+VI+HAIT+DG L + D  G
Sbjct:   66 DRINLIRGYLVKFADAIKK--EKNGTHVCVYMDESYIHTNHSIRKGFYKEDQRAN-RSNSKGRRLVILHAITQDGPLCSIDETG 146          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.830e-6
Identity = 30/93 (32.26%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   25 VTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGALVTNDGDGY 288
            + +DRKARIR +++++  A+    ++  + +IV+MD+S+ H  H    S+F   +N          +G+G R+++VHAIT+ GAL   D + +
Sbjct:  237 LNDDRKARIRRFLVEMSAAL--TQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNF 327          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.400e-5
Identity = 29/93 (31.18%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   25 VTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGALVTNDGDGY 288
            + +DRKARIR +++++  A+    ++  + +IV+MD+S+ H  H    S+F   ++          +G+G R+++VHAIT+ GAL   D + +
Sbjct:  237 LNDDRKARIRRFLVEMSAAL--TQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNF 327          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A815RDU5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A815RDU5_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 4.260e-5
Identity = 26/81 (32.10%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
            +D++ RIR+++ID   A+K     +  ++I +MD+SY++  H +  +++ A +   N     TG+G R++I+HA+T+ G L
Sbjct:  208 QDKRPRIRQFIIDYANALKAEEHGN--NVIAYMDESYVNTRHALNGTWYDASQPIGNKLIRGTGKGARLIIIHAMTKYGLL 286          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A819LEY8_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819LEY8_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 4.460e-5
Identity = 26/81 (32.10%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
            +D++ RIR+++ID   A+K     +  ++I +MD+SY++  H +  +++ A +   N     TG+G R++I+HA+T+ G L
Sbjct:  304 QDKRPRIRQFIIDYANALKAEEHGN--NVIAYMDESYVNTRHALNGTWYDASQPIGNKLIRGTGKGARLIIIHAMTKYGLL 382          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: A0A817Y2J9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817Y2J9_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 4.600e-5
Identity = 28/81 (34.57%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   31 EDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGE---NYTPHATGRGKRIVIVHAITEDGAL 264
            +D+  RIR+++ID   A+K     +   IIV+MD+SY++  H +  +++ + +   N     TG+G R++I+HAIT+ G L
Sbjct:  208 QDKTPRIRQFIIDYANALKAETHGNS--IIVYMDESYVNTRHALNGTWYDSSQPIGNKLIRGTGKGARLIIIHAITKYGLL 286          
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 8.690e-5
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   34 DRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHLHHKVKKSFFKAGENYTPH-----ATGRGKRIVIVHAITEDGAL 264
            +R ARIR +++++  A K+A D  L  +IV+MD+S++H  H    S+F + EN          TG+G R+++VHAIT+ G L
Sbjct:  276 ERLARIRRFLVEMDMA-KRAEDAGLA-VIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S0CJ29_9STRA3.970e-1041.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6H5KZM0_9PHAE6.830e-632.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ25_ECTSI3.400e-531.18Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A815RDU5_9BILA4.260e-532.10Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A819LEY8_9BILA4.460e-532.10Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A817Y2J9_9BILA4.600e-534.57Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
D8LNM6_ECTSI8.690e-539.02DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:908696..908983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size289
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927437.226439-CDS-C-linearis_contig11:908695..9089831622927437.226439-CDS-C-linearis_contig11:908695..908983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 908696..908983 +
1690879699.4437156-CDS-C-linearis_contig11:908695..9089831690879699.4437156-CDS-C-linearis_contig11:908695..908983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 908696..908983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1199.1prot_C-linearis_contig11.1199.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 908696..908983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1199.1

>prot_C-linearis_contig11.1199.1 ID=prot_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
MEEKTGYQVTEDRKARIREYVIDLYKAIKKANDKSLKHIIVFMDKSYIHL
HHKVKKSFFKAGENYTPHATGRGKRIVIVHAITEDGALVTNDGDGY
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mRNA from alignment at C-linearis_contig11:908696..908983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1199.1 ID=mRNA_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at C-linearis_contig11:908696..908983+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGAAAAGACTGGCTACCAAGTGACTGAGGACCGGAAGGCGCGTAT CCGCGAGTACGTTATCGACCTCTACAAGGCCATAAAAAAGGCAAACGACA AATCGTTGAAGCACATTATTGTCTTCATGGATAAGTCGTACATCCACCTC CACCACAAGGTAAAAAAATCCTTCTTCAAAGCCGGCGAGAACTACACGCC GCACGCTACCGGCAGGGGCAAAAGAATCGTCATAGTCCATGCAATCACGG AAGATGGAGCGTTGGTCACCAACGACGGCGATGGCTAC
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Coding sequence (CDS) from alignment at C-linearis_contig11:908696..908983+

>mRNA_C-linearis_contig11.1199.1 ID=mRNA_C-linearis_contig11.1199.1|Name=mRNA_C-linearis_contig11.1199.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig11:908696..908983+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGAAAAGACTGGCTACCAAGTGACTGAGGACCGGAAGGCGCGTAT
CCGCGAGTACGTTATCGACCTCTACAAGGCCATAAAAAAGGCAAACGACA
AATCGTTGAAGCACATTATTGTCTTCATGGATAAGTCGTACATCCACCTC
CACCACAAGGTAAAAAAATCCTTCTTCAAAGCCGGCGAGAACTACACGCC
GCACGCTACCGGCAGGGGCAAAAGAATCGTCATAGTCCATGCAATCACGG
AAGATGGAGCGTTGGTCACCAACGACGGCGATGGCTACATGGAGGAAAAG
ACTGGCTACCAAGTGACTGAGGACCGGAAGGCGCGTATCCGCGAGTACGT
TATCGACCTCTACAAGGCCATAAAAAAGGCAAACGACAAATCGTTGAAGC
ACATTATTGTCTTCATGGATAAGTCGTACATCCACCTCCACCACAAGGTA
AAAAAATCCTTCTTCAAAGCCGGCGAGAACTACACGCCGCACGCTACCGG
CAGGGGCAAAAGAATCGTCATAGTCCATGCAATCACGGAAGATGGAGCGT
TGGTCACCAACGACGGCGATGGCTAC
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