mRNA_C-linearis_contig11.1191.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A6H5L6K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K4_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 1.700e-138 Identity = 338/485 (69.69%), Postives = 367/485 (75.67%), Query Frame = 1
Query: 250 MSSLMTNIRKISL--QEGSSAIGRLLLQLGQAADSTLDAETLAELDKQAAVAACQALDAADGEGDGEEVGGEAPPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEEDSTATTVELSADASGHSDFGSSNSXXXXXXXPPQAGGDPTPNTTPANASSSLMHAXXXXXXXXXXXXXXXXXXXXXXXPRYHGAPSPLPRSARSSREASLVLPGGILSAPAAGAAARQPKEXXXXXXXAAGTDSSAEKPAAASEGPVTTVVLQGFDAE-EDEKVVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTV 1695
MS+LM+NIRK SL QE S+ +GRLLLQLGQAADS LDAETLAELDKQA+VAACQ L+ A XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX XXXXXXXXXXXXXXXXXXXXXXX + GAPSPLPRSARSSREASLV PGGILSAP XXXXXXX AA++GPV V+LQGF + +D+K+VVCESKALAHLFTRIRNR+TPP FRFYA+RMMRILAEEGIACLESSRQFITTPTAATFSS +V+ESNVC+VSILRAGDALAEAA+ACIPTAP GKILIQRDEES +KHPVLFY+KLP KIA MQVLLCDPMLATGGSALMA+RCL+EAGVKE+A+VF+TVVVCPEGI AVRAEFPEVTIVTGA+DDCLDE+RYILPGLGDFGDRFFGTV
Sbjct: 1 MSNLMSNIRKASLPLQESSAQLGRLLLQLGQAADSQLDAETLAELDKQASVAACQELEKA---AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGAPSPLPRSARSSREASLVFPGGILSAPVRKEQXXXXXXXXXXXXXXXXXXXXPAAKPAAADGPVK-VMLQGFALQADDDKLVVCESKALAHLFTRIRNRDTPPPVFRFYATRMMRILAEEGIACLESSRQFITTPTAATFSSPFVNESNVCIVSILRAGDALAEAARACIPTAPVGKILIQRDEESSDKHPVLFYKKLPSKIAKMQVLLCDPMLATGGSALMAIRCLVEAGVKEAAIVFITVVVCPEGIGAVRAEFPEVTIVTGAMDDCLDEKRYILPGLGDFGDRFFGTV 481
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: D8LGF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF2_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 3.700e-132 Identity = 231/300 (77.00%), Postives = 255/300 (85.00%), Query Frame = 1
Query: 823 GAPSPLPRSARSSREASLVLPGGILSAPAA-GAAARQPKEXXXXXXXAAGTDSSAEKPAAASEGPVTTVVLQGFDAE-EDEKVVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTVP*PERSV 1716
GAPSPLPRSARSSREASLV PGGILSAPA XXXXXXX + AA++GPV V+LQGF + +D+K+VVCESKALAHLFTRIRNR+TPP FRFYA+RMMRILAEEGIACLESSRQFITTPTAATFSS +V+ESNVC+VSILRAGDALAEAA+ACIPTAP GKILIQRDEES +KHPVLFY+KLP KI MQVLLCDPMLATGGSALMA+RCL+EAGVKE+A+VF+TVVVCPEGI AVRAEFPEVTIVTGA+DDCLDE+RYILPGLGDFGDR VP E +
Sbjct: 28 GAPSPLPRSARSSREASLVFPGGILSAPARKXXXXXXXXXXXXXXXXXXXXXXTPVAKLAAADGPVK-VMLQGFALQADDDKLVVCESKALAHLFTRIRNRDTPPPVFRFYATRMMRILAEEGIACLESSRQFITTPTAATFSSPFVNESNVCIVSILRAGDALAEAARACIPTAPVGKILIQRDEESSDKHPVLFYKKLPSKIGKMQVLLCDPMLATGGSALMAIRCLVEAGVKEAAIVFITVVVCPEGIGAVRAEFPEVTIVTGAMDDCLDEKRYILPGLGDFGDRLSCLVPDMESLI 326
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A836CLB7_9STRA (Uracil phosphoribosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB7_9STRA) HSP 1 Score: 212 bits (539), Expect = 1.900e-59 Identity = 111/212 (52.36%), Postives = 146/212 (68.87%), Query Frame = 1
Query: 1060 KVVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATF-SSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGT 1692
+V VC+ A+ HL T IR+ T F +YASR+M +LAEE +A L + + ITTPT AT +V ++ S VC VSI+RAGD+L EA + P GKILIQRDE S +KHPV++Y K P IA M V+LCDPMLATGGS +MA+ L++AG + +++F V+ PEGI AV + P V IVT ID L++ +YI+PGLGDFGDRF+GT
Sbjct: 6 QVTVCKHSAIPHLLTPIRDVTTSSVQFAYYASRLMALLAEEAMAMLPAQQVSITTPTGATLPDAVRINTSKVCAVSIIRAGDSLLEAVRKIAPDVHVGKILIQRDESSADKHPVMYYHKFPLGIARMPVILCDPMLATGGSVIMAVNTLLDAGCRAESIIFANVIAAPEGIEAVSSAHPAVRIVTCVIDASLNDNKYIMPGLGDFGDRFYGT 217
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A7S2LGL4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL4_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.700e-59 Identity = 110/212 (51.89%), Postives = 146/212 (68.87%), Query Frame = 1
Query: 1063 VVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSV-YVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTV 1695
+++ ESKA LFT++R+ +T P F F+A R+MRILAE+ IA L ITTP + + N+CVVSI+RAGD+L EA +AC+P GKILIQR+EE+ K P L+Y KLPP+I M VLLCDPMLATGGSA AL L + GV S ++FV V+ CPEG+ + + P+V +VT +D+CL+E +YI+PGLGD+GDRFF T
Sbjct: 9 LILSESKAYDALFTKMRDVKTKPSEFEFFAKRVMRILAEDAIAQLPHKTIKITTPCSPNIEGKELMSVDNICVVSIVRAGDSLMEAVRACLPGVSIGKILIQRNEETTEKLPTLYYSKLPPRIKDMNVLLCDPMLATGGSAKAALDVLTKHGVLLSNIIFVNVICCPEGLQRLAEDVPDVKVVTACVDECLNENKYIVPGLGDYGDRFFNTT 220
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A8K1CII0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CII0_PYTOL) HSP 1 Score: 208 bits (530), Expect = 4.410e-58 Identity = 107/210 (50.95%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 1069 VCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQ-VLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTV 1695
V + KAL+ L ++R+ TP F+ YA R+MRILAEEG+A + + + TPT F+ + V ++++C VSI+RAGD+L +A C PT GKILIQRDE S +KHP+LFY KLPP+IA+ VL+ DPMLAT GS L+A++ L++AGV E +VF+ V+ CPEGI + +P V +VT A+D L+E +YI+PGLGD+GDR+F TV
Sbjct: 19 VLKHKALSQLLIKLRDESTPHVEFKHYADRVMRILAEEGLATCATVSETVKTPTGDAFTGL-VPQAHICAVSIIRAGDSLLDAVMKCDPTVSVGKILIQRDESSHDKHPMLFYSKLPPQIASYDHVLVVDPMLATAGSVLLAIKTLIDAGVAEEKIVFLNVISCPEGIHTLFKAYPNVKVVTAAVDRGLNEHKYIVPGLGDYGDRYFNTV 227
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A7S2S9S7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9S7_9STRA) HSP 1 Score: 209 bits (532), Expect = 6.940e-58 Identity = 112/212 (52.83%), Postives = 145/212 (68.40%), Query Frame = 1
Query: 1060 KVVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACL-ESSRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGT 1692
+V+ +S+AL HLFT +R+ T F FY+SR+MRILAEEGIA L + R + T A F V NVC VSI+RAGD+L EA +AC P GKILIQRDE + K P LFY KLPP + M VLL DPMLATGGS+ MA++ L++ GV+E ++F+ V+ CPEG+ AV FP V I+T ID +++ +YI+PGLGD+GDRFF T
Sbjct: 50 EVLTVQSRALDHLFTHMRDETTGSADFAFYSSRLMRILAEEGIALLPKEQRNIVCRGTKAAFQGEVVPLDNVCAVSIVRAGDSLLEAVRACSPGMKVGKILIQRDESTAEKLPKLFYCKLPPGVEHMHVLLVDPMLATGGSSKMAIQSLVDRGVREEHIIFLNVISCPEGLKAVHDTFPGVKILTTCIDQGMNDHKYIVPGLGDYGDRFFNT 261
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A7S3V2X3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2X3_9STRA) HSP 1 Score: 208 bits (529), Expect = 7.120e-58 Identity = 112/224 (50.00%), Postives = 153/224 (68.30%), Query Frame = 1
Query: 1027 VLQGFDAEEDEKVVVCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLES-SRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTV 1695
V + + + + +V+ +S+A+ LFT++R++ T + YA R+MRILAEEG+A + S S + + TP + + +C VSI+R+GD L EA + P GKILIQRDE K P LFY KLPP +A +VLLCDPMLATGGSA+ A+ L++AGVK +VF+ V CPEGISA A+FP+V IVT AIDDCL++ +YI+PGLGDFGDR+FGT+
Sbjct: 11 VDEEYSTKTSDNLVLVQSRAITALFTQVRDKNTDQTGYVHYADRLMRILAEEGLAHMNSVSEKTVHTP-CGPYKGLETTRK-ICAVSIMRSGDILLEAVRRVDPRVTVGKILIQRDEADPEKRPKLFYSKLPPDVAECEVLLCDPMLATGGSAICAVSVLIKAGVKPENLVFLNTVCCPEGISAFHAKFPQVKIVTLAIDDCLNDDKYIVPGLGDFGDRYFGTL 232
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A8J5XPD7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPD7_DIALT) HSP 1 Score: 203 bits (516), Expect = 2.420e-56 Identity = 109/205 (53.17%), Postives = 143/205 (69.76%), Query Frame = 1
Query: 1075 ESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFG 1689
ES+A+ HL T +R+ TP AF +A R+MR+LAEEGIACL +R +TTP + S VC VSI+RAGD+L E +A P GK+LIQRDE++ P LFY KLP IA M VLLCDPMLATGGSA+MA+ L++ GV+ + ++F+ V+ CPEGI+ V A P V I+T A D+ L+ER++I+PGLGDFGDRF+G
Sbjct: 9 ESRAITHLMTVMRDASTPHEAFAAHARRLMRLLAEEGIACLPHTRIEVTTPCGTFVGEKLLVASAVCAVSIMRAGDSLVEEVRAAWPGVRVGKLLIQRDEQTAI--PRLFYEKLPADIARMHVLLCDPMLATGGSAMMAIDALLKRGVRAAFIIFLNVLSCPEGIARVHAAHPAVQIITCATDERLNERKFIVPGLGDFGDRFYG 211
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: A0A7S2UE47_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE47_9STRA) HSP 1 Score: 202 bits (513), Expect = 4.300e-56 Identity = 102/200 (51.00%), Postives = 142/200 (71.00%), Query Frame = 1
Query: 1099 FTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFS-SVYVDESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLM-EAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGT 1692
FT++R+ +T P F FYA R MR+LAE+ IA L++S I TP F + VD++ +C VSI+RAGD+L EA + C+P P GKILIQRDEES K LFY K+PP + M ++LCDPMLATGGSA+ A+ L+ E GV S ++F ++ CPEG+ ++ +P++ IVT ID+CL++++YI+PGLGD+GDRFF T
Sbjct: 1 FTKMRDVKTTPEDFAFYAKRAMRLLAEDAIAELQTSPITIQTPCVDQFEGTAVVDKNQICAVSIVRAGDSLLEAVRECLPGVPVGKILIQRDEESPGKEAKLFYAKMPPGVKDMTIILCDPMLATGGSAMKAIETLVSEFGVSPSNILFANMICCPEGLLSMATAYPQIKIVTACIDECLNDQKYIVPGLGDYGDRFFNT 200
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Match: E4YJX6_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4YJX6_OIKDI) HSP 1 Score: 200 bits (508), Expect = 6.840e-55 Identity = 100/210 (47.62%), Postives = 144/210 (68.57%), Query Frame = 1
Query: 1069 VCESKALAHLFTRIRNRETPPHAFRFYASRMMRILAEEGIACLESSRQFITTPTAATFSSVYVD-ESNVCVVSILRAGDALAEAAQACIPTAPFGKILIQRDEESRNKHPVLFYRKLPPKIATMQVLLCDPMLATGGSALMALRCLMEAGVKESAVVFVTVVVCPEGISAVRAEFPEVTIVTGAIDDCLDERRYILPGLGDFGDRFFGTV 1695
+C SK L +LF++IR+ +T P F FY+ R+M+++AE+ +A + I TP T+ V D ES VSI+RAGD++ +A + +P P KILIQRDE ++ K PVL+Y+K P +A L+CDPMLATGGS +MA++ L+E G+ E ++FV V+ CPEG++ + E+P V IVTG +D L+ R+I+PGLGD+GDRFFGTV
Sbjct: 28 LCTSKNLPYLFSKIRHVDTAPKEFEFYSLRLMKLIAEDALALMADKEVDIPTP-CGTWRGVAADPESEAFAVSIVRAGDSMLQAVRELVPGIPVAKILIQRDETTKEKTPVLYYKKWPKNVANKTALICDPMLATGGSVIMAIKSLLEIGIPEEKMIFVNVISCPEGLNRLGREYPSVKIVTGMVDPMLNSERFIVPGLGDYGDRFFGTV 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig11.1191.1 >prot_C-linearis_contig11.1191.1 ID=prot_C-linearis_contig11.1191.1|Name=mRNA_C-linearis_contig11.1191.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=484bp MSSLMTNIRKISLQEGSSAIGRLLLQLGQAADSTLDAETLAELDKQAAVAback to top mRNA from alignment at C-linearis_contig11:788028..794602+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig11.1191.1 ID=mRNA_C-linearis_contig11.1191.1|Name=mRNA_C-linearis_contig11.1191.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6575bp|location=Sequence derived from alignment at C-linearis_contig11:788028..794602+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig11:788028..794602+ >mRNA_C-linearis_contig11.1191.1 ID=mRNA_C-linearis_contig11.1191.1|Name=mRNA_C-linearis_contig11.1191.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2904bp|location=Sequence derived from alignment at C-linearis_contig11:788028..794602+ (Chordaria linearis ClinC8C monoicous)back to top |