mRNA_C-linearis_contig11.1361.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1361.1
Unique NamemRNA_C-linearis_contig11.1361.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:3117216..3117905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1361.1prot_C-linearis_contig11.1361.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 3117273..3117734 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.0316443-UTR-C-linearis_contig11:3117215..31172721622927429.0316443-UTR-C-linearis_contig11:3117215..3117272Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3117216..3117272 +
1690879694.763492-UTR-C-linearis_contig11:3117215..31172721690879694.763492-UTR-C-linearis_contig11:3117215..3117272Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3117216..3117272 +
1622927429.0585608-UTR-C-linearis_contig11:3117734..31179051622927429.0585608-UTR-C-linearis_contig11:3117734..3117905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3117735..3117905 +
1690879694.7856977-UTR-C-linearis_contig11:3117734..31179051690879694.7856977-UTR-C-linearis_contig11:3117734..3117905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 3117735..3117905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.0442836-CDS-C-linearis_contig11:3117272..31177341622927429.0442836-CDS-C-linearis_contig11:3117272..3117734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3117273..3117734 +
1690879694.774646-CDS-C-linearis_contig11:3117272..31177341690879694.774646-CDS-C-linearis_contig11:3117272..3117734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 3117273..3117734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1361.1

>prot_C-linearis_contig11.1361.1 ID=prot_C-linearis_contig11.1361.1|Name=mRNA_C-linearis_contig11.1361.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
MRESGSESGGWVYLRFPARHAFCAGCGLVRNGHAGFRSTAVRGIIATGTA
KHKTIARRTSFFWWPAGETTSRRAPTFCSESGTPALCQETTRFIATTKSC
CEQHRVDETSQIPRKQAPNPNKEKCTALSRWVRHNVPARPEPSKQNFRDS
SAL*
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mRNA from alignment at C-linearis_contig11:3117216..3117905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1361.1 ID=mRNA_C-linearis_contig11.1361.1|Name=mRNA_C-linearis_contig11.1361.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at C-linearis_contig11:3117216..3117905+ (Chordaria linearis ClinC8C monoicous)
CTCTGTGGTGATGGGGTGGTTACGTGGAAACAAGAGCAGCGAGGGGTGGG
CCGGGGGATGCGTGAAAGCGGAAGCGAGTCCGGTGGTTGGGTTTATTTAC
GGTTTCCGGCCCGCCACGCGTTTTGTGCCGGGTGTGGTCTTGTAAGAAAT
GGCCATGCGGGCTTTCGAAGCACAGCGGTACGAGGCATTATAGCAACTGG
GACGGCAAAACACAAAACGATTGCCCGCCGCACCTCGTTTTTTTGGTGGC
CCGCAGGGGAAACCACATCAAGGAGGGCACCTACCTTTTGTAGCGAGAGC
GGAACCCCCGCTCTGTGCCAAGAAACGACAAGGTTTATTGCAACGACAAA
ATCTTGCTGCGAACAACATCGTGTAGACGAGACCTCTCAGATTCCCCGTA
AACAAGCGCCCAACCCGAACAAGGAAAAATGTACGGCGCTCAGTCGGTGG
GTTCGGCACAACGTGCCAGCGCGTCCAGAACCCTCCAAGCAAAACTTCCG
CGACAGTAGTGCCCTCTGACGCTCCACACTTCCCACCACTTCAGAGAGAG
AGAGAGAGAGAAAAAAAAAGAGATCGCCGCAAAAACACTTAACGTGCCGC
CAGGCCCCCACAACACGCACCGCACACACAGGAAAACAATCGTAATCTTC
CACACGTACGTGCGTACGCACCTCATCGTCAACAAACTCC
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Coding sequence (CDS) from alignment at C-linearis_contig11:3117216..3117905+

>mRNA_C-linearis_contig11.1361.1 ID=mRNA_C-linearis_contig11.1361.1|Name=mRNA_C-linearis_contig11.1361.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at C-linearis_contig11:3117216..3117905+ (Chordaria linearis ClinC8C monoicous)
ATGCGTGAAAGCGGAAGCGAGTCCGGTGGTTGGGTTTATTTACGGTTTCC
GGCCCGCCACGCGTTTTGTGCCGGGTGTGGTCTTGTAAGAAATGGCCATG
CGGGCTTTCGAAGCACAGCGGTACGAGGCATTATAGCAACTGGGACGGCA
AAACACAAAACGATTGCCCGCCGCACCTCGTTTTTTTGGTGGCCCGCAGG
GGAAACCACATCAAGGAGGGCACCTACCTTTTGTAGCGAGAGCGGAACCC
CCGCTCTGTGCCAAGAAACGACAAGGTTTATTGCAACGACAAAATCTTGC
TGCGAACAACATCGTGTAGACGAGACCTCTCAGATTCCCCGTAAACAAGC
GCCCAACCCGAACAAGGAAAAATGTACGGCGCTCAGTCGGTGGGTTCGGC
ACAACGTGCCAGCGCGTCCAGAACCCTCCAAGCAAAACTTCCGCGACAGT
AGTGCCCTCTGAATGCGTGAAAGCGGAAGCGAGTCCGGTGGTTGGGTTTA
TTTACGGTTTCCGGCCCGCCACGCGTTTTGTGCCGGGTGTGGTCTTGTAA
GAAATGGCCATGCGGGCTTTCGAAGCACAGCGGTACGAGGCATTATAGCA
ACTGGGACGGCAAAACACAAAACGATTGCCCGCCGCACCTCGTTTTTTTG
GTGGCCCGCAGGGGAAACCACATCAAGGAGGGCACCTACCTTTTGTAGCG
AGAGCGGAACCCCCGCTCTGTGCCAAGAAACGACAAGGTTTATTGCAACG
ACAAAATCTTGCTGCGAACAACATCGTGTAGACGAGACCTCTCAGATTCC
CCGTAAACAAGCGCCCAACCCGAACAAGGAAAAATGTACGGCGCTCAGTC
GGTGGGTTCGGCACAACGTGCCAGCGCGTCCAGAACCCTCCAAGCAAAAC
TTCCGCGACAGTAGTGCCCTCTGA
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