mRNA_C-linearis_contig11.1269.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1269.1
Unique NamemRNA_C-linearis_contig11.1269.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2088995..2089543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.6305623-CDS-C-linearis_contig11:2088994..20894891622927428.6305623-CDS-C-linearis_contig11:2088994..2089489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2088995..2089489 +
1690879694.5895007-CDS-C-linearis_contig11:2088994..20894891690879694.5895007-CDS-C-linearis_contig11:2088994..2089489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2088995..2089489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.6409895-UTR-C-linearis_contig11:2089489..20895431622927428.6409895-UTR-C-linearis_contig11:2089489..2089543Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2089490..2089543 +
1690879694.6032286-UTR-C-linearis_contig11:2089489..20895431690879694.6032286-UTR-C-linearis_contig11:2089489..2089543Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2089490..2089543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1269.1prot_C-linearis_contig11.1269.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2088995..2089489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1269.1

>prot_C-linearis_contig11.1269.1 ID=prot_C-linearis_contig11.1269.1|Name=mRNA_C-linearis_contig11.1269.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=165bp
LRVTNNKRAPREREDCTQQQQSTCVPRATRSSPRIPRRPRLLDPGQVRGD
HTGPVDSCRNHTAAADTTVVTFDMLSDCGGLPPQCIWASGRKECRGSTPC
NWLFIKALLLLLLLSVLMRVTKSMWYVVFAAAGPSLHAEAGSMFLEQTIR
WVSPHCSLPVVYSF*
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mRNA from alignment at C-linearis_contig11:2088995..2089543+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1269.1 ID=mRNA_C-linearis_contig11.1269.1|Name=mRNA_C-linearis_contig11.1269.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at C-linearis_contig11:2088995..2089543+ (Chordaria linearis ClinC8C monoicous)
CTGCGAGTGACAAACAACAAGAGAGCGCCGAGAGAGAGAGAGGACTGCAC
ACAGCAACAGCAATCAACATGTGTTCCCAGGGCGACGAGGAGTTCTCCAC
GCATCCCACGGCGGCCCCGACTGCTCGATCCGGGCCAGGTGAGGGGCGAC
CACACTGGCCCTGTGGATTCCTGTCGCAACCATACGGCAGCAGCGGATAC
AACAGTAGTGACGTTCGACATGTTGTCGGACTGCGGGGGGCTTCCTCCCC
AATGCATTTGGGCATCAGGCCGGAAGGAATGCAGGGGGTCAACCCCGTGC
AACTGGCTTTTCATCAAGGCGCTGCTTCTGCTGCTGCTGCTGTCTGTGCT
TATGCGTGTGACTAAATCTATGTGGTATGTGGTGTTTGCGGCCGCGGGAC
CGTCGTTGCATGCTGAAGCTGGAAGTATGTTCTTGGAACAAACCATACGG
TGGGTCTCTCCCCATTGTAGTCTACCGGTAGTCTATTCATTTTAGTGTTG
CGTATCGTATCGAACTTTTCGATATATCGTATCGACATATCGTATCGTT
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Coding sequence (CDS) from alignment at C-linearis_contig11:2088995..2089543+

>mRNA_C-linearis_contig11.1269.1 ID=mRNA_C-linearis_contig11.1269.1|Name=mRNA_C-linearis_contig11.1269.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at C-linearis_contig11:2088995..2089543+ (Chordaria linearis ClinC8C monoicous)
CTGCGAGTGACAAACAACAAGAGAGCGCCGAGAGAGAGAGAGGACTGCAC
ACAGCAACAGCAATCAACATGTGTTCCCAGGGCGACGAGGAGTTCTCCAC
GCATCCCACGGCGGCCCCGACTGCTCGATCCGGGCCAGGTGAGGGGCGAC
CACACTGGCCCTGTGGATTCCTGTCGCAACCATACGGCAGCAGCGGATAC
AACAGTAGTGACGTTCGACATGTTGTCGGACTGCGGGGGGCTTCCTCCCC
AATGCATTTGGGCATCAGGCCGGAAGGAATGCAGGGGGTCAACCCCGTGC
AACTGGCTTTTCATCAAGGCGCTGCTTCTGCTGCTGCTGCTGTCTGTGCT
TATGCGTGTGACTAAATCTATGTGGTATGTGGTGTTTGCGGCCGCGGGAC
CGTCGTTGCATGCTGAAGCTGGAAGTATGTTCTTGGAACAAACCATACGG
TGGGTCTCTCCCCATTGTAGTCTACCGGTAGTCTATTCATTTTAGCTGCG
AGTGACAAACAACAAGAGAGCGCCGAGAGAGAGAGAGGACTGCACACAGC
AACAGCAATCAACATGTGTTCCCAGGGCGACGAGGAGTTCTCCACGCATC
CCACGGCGGCCCCGACTGCTCGATCCGGGCCAGGTGAGGGGCGACCACAC
TGGCCCTGTGGATTCCTGTCGCAACCATACGGCAGCAGCGGATACAACAG
TAGTGACGTTCGACATGTTGTCGGACTGCGGGGGGCTTCCTCCCCAATGC
ATTTGGGCATCAGGCCGGAAGGAATGCAGGGGGTCAACCCCGTGCAACTG
GCTTTTCATCAAGGCGCTGCTTCTGCTGCTGCTGCTGTCTGTGCTTATGC
GTGTGACTAAATCTATGTGGTATGTGGTGTTTGCGGCCGCGGGACCGTCG
TTGCATGCTGAAGCTGGAAGTATGTTCTTGGAACAAACCATACGGTGGGT
CTCTCCCCATTGTAGTCTACCGGTAGTCTATTCATTTTAG
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