mRNA_C-linearis_contig11.1236.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1236.1
Unique NamemRNA_C-linearis_contig11.1236.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:1446476..1446925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1236.1prot_C-linearis_contig11.1236.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 1446561..1446908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.5085154-UTR-C-linearis_contig11:1446475..14465601622927428.5085154-UTR-C-linearis_contig11:1446475..1446560Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1446476..1446560 +
1690879694.546528-UTR-C-linearis_contig11:1446475..14465601690879694.546528-UTR-C-linearis_contig11:1446475..1446560Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1446476..1446560 +
1622927428.5296519-UTR-C-linearis_contig11:1446908..14469251622927428.5296519-UTR-C-linearis_contig11:1446908..1446925Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1446909..1446925 +
1690879694.5694966-UTR-C-linearis_contig11:1446908..14469251690879694.5694966-UTR-C-linearis_contig11:1446908..1446925Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 1446909..1446925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927428.519385-CDS-C-linearis_contig11:1446560..14469081622927428.519385-CDS-C-linearis_contig11:1446560..1446908Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1446561..1446908 +
1690879694.5582778-CDS-C-linearis_contig11:1446560..14469081690879694.5582778-CDS-C-linearis_contig11:1446560..1446908Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 1446561..1446908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1236.1

>prot_C-linearis_contig11.1236.1 ID=prot_C-linearis_contig11.1236.1|Name=mRNA_C-linearis_contig11.1236.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MVGRFKCLSVACSLPGRANLISARVVSCLEANFSSLALFSPLCLYLSVPL
ASNPALSHTLHVFSRGCHGPCLLPHRLPGLDVHLPCFGTAFIFRCCRWGG
SQSGITEGEIVIPDE*
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mRNA from alignment at C-linearis_contig11:1446476..1446925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1236.1 ID=mRNA_C-linearis_contig11.1236.1|Name=mRNA_C-linearis_contig11.1236.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=450bp|location=Sequence derived from alignment at C-linearis_contig11:1446476..1446925+ (Chordaria linearis ClinC8C monoicous)
CTTCGCTTTCGGGTTGCGTTTGTTGGGTGTTGTATTTCGAGGTAGTCTGC
AAGGCAGACGACCGCAGTGAGAGGACCTAGCTCGAATGGTGGGTCGATTC
AAGTGTCTTTCCGTGGCTTGCTCTCTCCCGGGGCGAGCAAACTTGATTTC
CGCACGCGTCGTTTCTTGTCTCGAAGCAAACTTTTCATCCCTAGCTCTGT
TCTCACCCCTGTGCCTCTACCTCTCCGTCCCTCTCGCCTCGAACCCCGCT
CTCTCCCATACTTTGCATGTTTTTTCACGTGGCTGCCATGGTCCCTGTTT
GCTGCCGCACCGGCTCCCTGGACTGGACGTACATCTACCGTGTTTCGGGA
CTGCTTTTATCTTTCGCTGTTGTCGTTGGGGTGGGTCGCAGAGCGGCATC
ACCGAGGGAGAGATCGTCATCCCGGACGAGTAGAGTAAAACTCCGTTGCC
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Coding sequence (CDS) from alignment at C-linearis_contig11:1446476..1446925+

>mRNA_C-linearis_contig11.1236.1 ID=mRNA_C-linearis_contig11.1236.1|Name=mRNA_C-linearis_contig11.1236.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig11:1446476..1446925+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGGTCGATTCAAGTGTCTTTCCGTGGCTTGCTCTCTCCCGGGGCG
AGCAAACTTGATTTCCGCACGCGTCGTTTCTTGTCTCGAAGCAAACTTTT
CATCCCTAGCTCTGTTCTCACCCCTGTGCCTCTACCTCTCCGTCCCTCTC
GCCTCGAACCCCGCTCTCTCCCATACTTTGCATGTTTTTTCACGTGGCTG
CCATGGTCCCTGTTTGCTGCCGCACCGGCTCCCTGGACTGGACGTACATC
TACCGTGTTTCGGGACTGCTTTTATCTTTCGCTGTTGTCGTTGGGGTGGG
TCGCAGAGCGGCATCACCGAGGGAGAGATCGTCATCCCGGACGAGTAGAT
GGTGGGTCGATTCAAGTGTCTTTCCGTGGCTTGCTCTCTCCCGGGGCGAG
CAAACTTGATTTCCGCACGCGTCGTTTCTTGTCTCGAAGCAAACTTTTCA
TCCCTAGCTCTGTTCTCACCCCTGTGCCTCTACCTCTCCGTCCCTCTCGC
CTCGAACCCCGCTCTCTCCCATACTTTGCATGTTTTTTCACGTGGCTGCC
ATGGTCCCTGTTTGCTGCCGCACCGGCTCCCTGGACTGGACGTACATCTA
CCGTGTTTCGGGACTGCTTTTATCTTTCGCTGTTGTCGTTGGGGTGGGTC
GCAGAGCGGCATCACCGAGGGAGAGATCGTCATCCCGGACGAGTAG
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