mRNA_C-linearis_contig11.1157.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1157.1
Unique NamemRNA_C-linearis_contig11.1157.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:333571..335373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size441
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1157.1prot_C-linearis_contig11.1157.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 333573..335373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927425.1297147-CDS-C-linearis_contig11:333572..3335951622927425.1297147-CDS-C-linearis_contig11:333572..333595Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 333573..333595 -
1690879693.0502465-CDS-C-linearis_contig11:333572..3335951690879693.0502465-CDS-C-linearis_contig11:333572..333595Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 333573..333595 -
1622927425.1421008-CDS-C-linearis_contig11:333859..3338951622927425.1421008-CDS-C-linearis_contig11:333859..333895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 333860..333895 -
1690879693.0611773-CDS-C-linearis_contig11:333859..3338951690879693.0611773-CDS-C-linearis_contig11:333859..333895Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 333860..333895 -
1622927425.1521997-CDS-C-linearis_contig11:334223..3342771622927425.1521997-CDS-C-linearis_contig11:334223..334277Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 334224..334277 -
1690879693.071642-CDS-C-linearis_contig11:334223..3342771690879693.071642-CDS-C-linearis_contig11:334223..334277Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 334224..334277 -
1622927425.1611247-CDS-C-linearis_contig11:334518..3346371622927425.1611247-CDS-C-linearis_contig11:334518..334637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 334519..334637 -
1690879693.079556-CDS-C-linearis_contig11:334518..3346371690879693.079556-CDS-C-linearis_contig11:334518..334637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 334519..334637 -
1622927425.1719573-CDS-C-linearis_contig11:335167..3353731622927425.1719573-CDS-C-linearis_contig11:335167..335373Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 335168..335373 -
1690879693.0872898-CDS-C-linearis_contig11:335167..3353731690879693.0872898-CDS-C-linearis_contig11:335167..335373Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 335168..335373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1157.1

>prot_C-linearis_contig11.1157.1 ID=prot_C-linearis_contig11.1157.1|Name=mRNA_C-linearis_contig11.1157.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp
RGELGAVGTCNLGSARTPPSSRTLIRCSWFSVCRSMLPSPALVQVCVHRE
LRLTPTGSARIVCAVFLSSHGEDCRKGPGVFEDQAHASTTPEESEESRPT
RPRLREGMDSSPEQRPAQRRAKSEEQGRRQRQQRRRRGGAFHRRGC
back to top

mRNA from alignment at C-linearis_contig11:333571..335373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1157.1 ID=mRNA_C-linearis_contig11.1157.1|Name=mRNA_C-linearis_contig11.1157.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1803bp|location=Sequence derived from alignment at C-linearis_contig11:333571..335373- (Chordaria linearis ClinC8C monoicous)
AGAGGGGAGCTCGGCGCTGTAGGAACGTGCAATTTAGGTAGCGCACGCAC
ACCGCCTTCTTCTCGGACGCTAATTCGGTGCTCTTGGTTCTCTGTGTGTC
GTTCTATGCTCCCCTCCCCCGCCCTCGTGCAGGTGTGCGTTCACCGGGAG
CTCCGACTGACGCCAACGGGCAGCGCTCGCATCGTCTGTGCTGTTTTCCT
GTCGAGGTGAGCCCTTGCTATCCACCGTTCGAAAGAGGCCATTTCGGGCT
CACAAACGAGCCACGGTACGTACTAAGTTCGTCAGGAGGATTCACGCACA
GTTGTATCAGGCATCGCTTCCAGCTGCTTTCGTGTATGTGGAAAAGAGAG
ACAGAGACAGAGAGAGCGAGGGCACGCGATTGTCTGGAAACATGTAGAGT
GTGGAAGTGTCGAGTTTTAGTTTCCGATTGGGCAGCAACTAACAGATCGA
TCGGCCGGTAGAGGGAGCGGCTTCAACATACTTGAAGTTAACGTTATGAC
ATCGTTCTCATGATGGCTGCGTGTGTGTGTATGGTATGTCGCGGAAATGT
TTTATTGTTCTCCAGTATGTGTGTGCGTGCGTGCGCCCCCACCCCAATCC
AGATAGTCGGAAACTCGATCGGTGGCAATGCACCTCGCGTATGCAACAGT
CATGTCTTCGTTCCGTACTTGAAGTATGGCAACATCACTCACGCAAGACG
TTGTGCTCTACCCTGCGTACCGATAAAACACGACAGCCATGGCGAGGACT
GCCGGAAAGGACCCGGGGTTTTCGAAGACCAAGCACACGCCTCGACGACG
CCAGAGGAAAGCGAAGAGTCCCGACCGACTCGGCCAAGGCTCCGGGAAGG
AATGGGTGAGCGGCGTTGTGAGAGCATAGGCTTTTGTGATGCGTGAGTCG
TTGTCGATCAGTGAAAGAGACGAGGCTGTTCTTGGCAGCCTCGACGGGCT
CTTGTCCGAGCGGAAGAGAGTGGATTCTATGTAAGCCAGTTTCCGTGCGA
TTACACGGATGTCTCTGTCGGCAACTCTCGAGTATTCAATGCCTTTGATC
GATCATTGTCGCGCTTCCGCCGTCCTCGCTCCGTTGTCCCAACTAGACTC
CTCGCCCGAACAACGCCCAGCCCAACGGAGGGCGAAAAGCGAAGAACAGG
GTGAGAAACACATGGATGTTAGCTGGCTTATTCAAGTCTTTGGTTGGGTT
CATTTTGCCAGCCGCTGCTGCTGCTGTCGTCCGGTTCAACCTCCTACTCT
CCCTATTTTCGCGCAGTTGAAGGTAGAGATTCGACCATCGACCGATGCAA
GCTGCCTGGCGGCCGTTCTAGTCCTACGATGTCTAGCTTTCTATTTCCGT
TCCCCTTCCTCTTTGCCGGCTACGGATGATTTGAACATTTGCCGACGAAA
CTTTCGCTACCTCGTTCGATCCGATGTTCTCCCCGTTCTTTCTGTCCCGT
TCCCCGATATCGTTTTCCTCTTTTGGAGGCCGACGGCAGCGGCAGCAGCG
GCGGCGGCGCGGAGGTAAGATGTTCTCTGTGCCCGTTGCGGGAAAGGAGT
ACACACGGCTGTGCCCCCGACGGCTTTTGTTGGTTCGTGACCGCGGCGGT
TTGGTGTTTAGTCGGGGAGAAACTTCTTTTTCCTCTTGATTTCACCCCAA
TGTGGAATGCTTGCGAATTCGTCTGGCATCCCCGCCAAAAAAGACAAGAC
ATTTCATGTGCCACACCCGGCACTTTTCACCCGCATTGATCAGAACGTTA
AAACCCGCCCGGTATGATACACATGCAGGTGCCTTCCACCGACGAGGGTG
TCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig11:333571..335373-

>mRNA_C-linearis_contig11.1157.1 ID=mRNA_C-linearis_contig11.1157.1|Name=mRNA_C-linearis_contig11.1157.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig11:333571..335373- (Chordaria linearis ClinC8C monoicous)
AGAGGGGAGCTCGGCGCTGTAGGAACGTGCAATTTAGGTAGCGCACGCAC
ACCGCCTTCTTCTCGGACGCTAATTCGGTGCTCTTGGTTCTCTGTGTGTC
GTTCTATGCTCCCCTCCCCCGCCCTCGTGCAGGTGTGCGTTCACCGGGAG
CTCCGACTGACGCCAACGGGCAGCGCTCGCATCGTCTGTGCTGTTTTCCT
GTCGAGAGAGGGGAGCTCGGCGCTGTAGGAACGTGCAATTTAGGTAGCGC
ACGCACACCGCCTTCTTCTCGGACGCTAATTCGGTGCTCTTGGTTCTCTG
TGTGTCGTTCTATGCTCCCCTCCCCCGCCCTCGTGCAGGTGTGCGTTCAC
CGGGAGCTCCGACTGACGCCAACGGGCAGCGCTCGCATCGTCTGTGCTGT
TTTCCTGTCGAGCCATGGCGAGGACTGCCGGAAAGGACCCGGGGTTTTCG
AAGACCAAGCACACGCCTCGACGACGCCAGAGGAAAGCGAAGAGTCCCGA
CCGACTCGGCCAAGGCTCCGGGAAGGAATGGCCATGGCGAGGACTGCCGG
AAAGGACCCGGGGTTTTCGAAGACCAAGCACACGCCTCGACGACGCCAGA
GGAAAGCGAAGAGTCCCGACCGACTCGGCCAAGGCTCCGGGAAGGAATGG
ACTCCTCGCCCGAACAACGCCCAGCCCAACGGAGGGCGAAAAGCGAAGAA
CAGGACTCCTCGCCCGAACAACGCCCAGCCCAACGGAGGGCGAAAAGCGA
AGAACAGGGCCGACGGCAGCGGCAGCAGCGGCGGCGGCGCGGAGGCCGAC
GGCAGCGGCAGCAGCGGCGGCGGCGCGGAGGTGCCTTCCACCGACGAGGG
TGTGTGCCTTCCACCGACGAGGGTGT
back to top