mRNA_C-linearis_contig107.1045.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 505 bits (1300), Expect = 2.350e-172 Identity = 258/353 (73.09%), Postives = 293/353 (83.00%), Query Frame = 2
Query: 2 EGTFGILK--------------REKCERVAEQLVLASEMEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYANLTELCGRAIRTYTDSIPTTSTVGDQSMFADLMRNVEDFVRKNRSGDTEQSSLQV 1018
EGTF +LK R KCE++A +L LAS M+ TK+TSLGKGYVE+DVKKS+EK+M+ Y EVGASKYA+EE+W+EMLASSAYDTS + EG S Q+L+ LATRS +SND+TN GHD G GDVCCQVPKEVFEE+EAPDTTMFGTTSLHSF +L+E VEIDC+VKVLYK K DRKVGHLV+VGPG FQLCTCLQLLRRGLQCRHVLAALVT+LKRSDEF G SIHPRWRSSVEPWSIA+V LGTF D + S+DGGFTGDW+ SGDF DLQG+NTS S+LSVLRGRA+ANLTELC RA+RTYTDS+ ST DQSMF DLMR+V DFV K RSGDTE+SS QV
Sbjct: 263 EGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEESSFQV 615
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 231 bits (588), Expect = 3.300e-63 Identity = 123/229 (53.71%), Postives = 165/229 (72.05%), Query Frame = 2
Query: 83 TKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEI---DCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWR-SSVEPWSIADVGLGTFGDDREESFDGGF 757
TK SL ++E DVKK+IE +M +Y + GAS YA+ E+ +EM+AS +YDT+ +V+G SK++L++LA + + ++DGNGDVCCQVP +VF+ ++ PDT+MFGTT L SFY+L+ V+I D VVKV+YK RKVGHLVV+GP FQLC CLQL+RRGLQCRHVLAALVT+L R+ EF G IHPRWR +SV+ WS+ V LG+F ++ S+ G F
Sbjct: 1140 TKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPS-----------NNDGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYK---RRKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRF 1354
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 198 bits (503), Expect = 4.290e-53 Identity = 130/302 (43.05%), Postives = 175/302 (57.95%), Query Frame = 2
Query: 2 EGTFGILKR-----EKCE--RVAEQL-------VLASEMEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYK-PKLDR--KVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYAN 856
EG F +LK+ +C RV +L LAS + TK SLG+ +++ V K+ E + + +VGAS YA E+ +EM AS+AYDT+ + + A + A GG +G C VP E FE PD TM+GTTSL SF +L+ V I+ VV+V YK P+ R KV H+VVVGP FQLCTCL+L+R GL C HV AALVT+L R+ +F G SIHPRWR SV WS+ +V LGTF D E+F GGFT D+ GDF D ++T ++ ++ R +AY +
Sbjct: 318 EGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAER-------GGRTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTF--DGHETFTGGFTEDFG-GGDF-DGDSQDTLNTSVAYTRKKAYVD 605
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 193 bits (491), Expect = 1.880e-50 Identity = 118/261 (45.21%), Postives = 158/261 (60.54%), Query Frame = 2
Query: 83 TKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYK-PKLDR--KVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRSSVEPWSIADVGLGTFGDDREESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYAN 856
TK SLG+ +++ V K+ E + + +VGAS YA E+ +EM AS+AYDT+ + + A + A GG +G C VP E FE PD TM+GTTSL SF +L+ V I+ VV+V YK P+ R KV H+VVVGP FQLCTCL+L+R GL C HV AALVT+L R+ +F G SIHPRWR SV WS+ +V LGTF D E+F GGFT D+ GDF D ++T ++ ++ R +AY +
Sbjct: 705 TKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAER-------GGRTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTF--DGHETFTGGFTEDFG-GGDF-DGDSQDTLNTSVAYTRKKAYVD 951
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 157 bits (397), Expect = 8.080e-43 Identity = 87/174 (50.00%), Postives = 109/174 (62.64%), Query Frame = 2
Query: 194 EVWSEMLASSAYDTSTIVEGHASKQYLKELATRSATESNDTTNGGGHDDGNGDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDEFAGLSIHPRWRS-SVEPWSIADVGL 712
E SEML Y +VEG S ++L++L + DGNGDVCC+VP+E F+ ++ P+T FG L SF++L+ V+ID VKV YK + V HLVV+GP RFQ+CTCLQ++RRG QCRHVLAALV R EFAG SIHPRWR S EPWS+ V L
Sbjct: 6 EFMSEMLTFLYYCPEVLVEGKGSMRFLEDLTAHPSNR-----------DGNGDVCCEVPREAFDGKDNPETK-FGAICLQSFFRLVANVKIDAGVKVSYKYR-SPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWRPRSAEPWSLERVAL 165
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 5.200e-17 Identity = 76/215 (35.35%), Postives = 98/215 (45.58%), Query Frame = 2
Query: 374 EVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRSSVE----PWSIADV------GLGTFGDD--REESFDGGFTGDWDQSGDFGDLQGENTSDSLLSVLRGRAYANLTELCGRAIRTYTDSIPTTSTVGDQSMFADLMR 955
+ + E A D TM+ SL +F LIE + I VV V Y +R HLVV GP F LC+CLQLLRRGL CRH A LV + R+ E F G +H RWR + PWSI+ + G+G G D R+ES+ G T D G G D S R R YA+L + S+P + Q + +R
Sbjct: 1135 DQLDGEAAVDNTMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRP-SHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLLSSSGHGVGWDGHDEGRDESY-WGPTCDEAVDGIHPTEPGGGAQDRSASDKR-RVYAHLMAKSKELVGDIMRSVPLHQALSVQDKVGEYLR 1346
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.500e-16 Identity = 54/119 (45.38%), Postives = 65/119 (54.62%), Query Frame = 2
Query: 389 EEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRS----SVEPWSIADV 706
E A D TM+ TSL +F LIE + I+ V V YK +R HLVV G F LC+CLQLLRRGL CRH A LV + R+ E F G +H RWR + PWSI+ V
Sbjct: 230 EAAVDNTMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRP-SHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSV 347
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.180e-15 Identity = 53/119 (44.54%), Postives = 65/119 (54.62%), Query Frame = 2
Query: 389 EEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKRSDE---------FAGLSIHPRWRSSVE----PWSIADV 706
E A D TM+ TSL +F LIE + I+ VV V YK +R HLVV GP F LC+CLQLLRR L CRH A LV + R+ E F G +H RWR + W+I+ V
Sbjct: 917 EAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRP-SHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSV 1034
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5L2H3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H3_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 5.670e-15 Identity = 70/205 (34.15%), Postives = 94/205 (45.85%), Query Frame = 2
Query: 167 VGASKYAQEEVWSEMLASSAYDTSTIVEGHASKQY----LKELATRSATESNDTTNGGGHDDGN----------GDVCCQVPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRHVLAALVTQLKR-------SDEFAGLSIHPRWRSSVE----PWSIADV 706
VGAS+Y Q E E+ S +YD I G A + L+ R E+ H D N ++ C++ E E D T++ TSL + L+ RV + V YK R GH+VVVGPG F LC+CL+ LR GL CRH A LV + + EF G S+H RWR S + PW+ + V
Sbjct: 184 VGASQYCQLEAKDELGGSQSYDVEVICVGAADDKGHPVPLEGGVLRQQLEA-------AHFDFNLYEEAPPDTDMEIDCKLGPEA---ESTEDNTVWARTSLEAPLDLVSRVPVHLAAAVRYKLTPSRP-GHVVVVGPGGFYLCSCLKFLRHGLPCRHYFAVLVRFIGGKYGGVLLNHEFDGNSVHTRWRQSPDGSDAPWTASRV 377
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.180e-14 Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 2
Query: 365 VPKEVFEEEEAPDTTMFGTTSLHSFYQLIERVEIDCVVKVLYKPKLDRKVGHLVVVGPGRFQLCTCLQLLRRGLQCRH---VLAALVTQLKRSDE------FAGLSIHPRWRSS----VEPWSIADV 706
+ ++ +E A D TM+ TSL +F +L+ I+ V V YK + HLV GP F L +CLQLLRRGL CRH VLA L+ + SDE F G +H RWR S V PWS++ V
Sbjct: 524 LERDSLADEPAEDNTMWACTSLLAFLELVAGFPIELVAAVRYKYSANNP-SHLVAFGPHNFHLRSCLQLLRRGLPCRHYFAVLANLIGRTGESDEWSFTHAFDGSCVHNRWRQSDDGKVLPWSVSFV 649 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig107.1045.1 >prot_C-linearis_contig107.1045.1 ID=prot_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=350bp MEVTKRTSLGKGYVEHDVKKSIEKIMSKYIEVGASKYAQEEVWSEMLASSback to top mRNA from alignment at C-linearis_contig107:388779..390458- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig107.1045.1 ID=mRNA_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1680bp|location=Sequence derived from alignment at C-linearis_contig107:388779..390458- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig107:388779..390458- >mRNA_C-linearis_contig107.1045.1 ID=mRNA_C-linearis_contig107.1045.1|Name=mRNA_C-linearis_contig107.1045.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2100bp|location=Sequence derived from alignment at C-linearis_contig107:388779..390458- (Chordaria linearis ClinC8C monoicous)back to top |