mRNA_C-linearis_contig107.1027.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig107.1027.1
Unique NamemRNA_C-linearis_contig107.1027.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig107.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig107contigC-linearis_contig107:169420..170353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size803
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig107.1027.1prot_C-linearis_contig107.1027.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig107 169695..170347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.7894518-UTR-C-linearis_contig107:169419..1696941622927402.7894518-UTR-C-linearis_contig107:169419..169694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 169420..169694 -
1690879680.5348885-UTR-C-linearis_contig107:169419..1696941690879680.5348885-UTR-C-linearis_contig107:169419..169694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 169420..169694 -
1622927402.825069-UTR-C-linearis_contig107:170347..1703531622927402.825069-UTR-C-linearis_contig107:170347..170353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 170348..170353 -
1690879680.561291-UTR-C-linearis_contig107:170347..1703531690879680.561291-UTR-C-linearis_contig107:170347..170353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig107 170348..170353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927402.8025298-CDS-C-linearis_contig107:169694..1698831622927402.8025298-CDS-C-linearis_contig107:169694..169883Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 169695..169883 -
1690879680.5445638-CDS-C-linearis_contig107:169694..1698831690879680.5445638-CDS-C-linearis_contig107:169694..169883Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 169695..169883 -
1622927402.8141437-CDS-C-linearis_contig107:170014..1703471622927402.8141437-CDS-C-linearis_contig107:170014..170347Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 170015..170347 -
1690879680.5529866-CDS-C-linearis_contig107:170014..1703471690879680.5529866-CDS-C-linearis_contig107:170014..170347Chordaria linearis ClinC8C monoicousCDSC-linearis_contig107 170015..170347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig107.1027.1

>prot_C-linearis_contig107.1027.1 ID=prot_C-linearis_contig107.1027.1|Name=mRNA_C-linearis_contig107.1027.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
MQLLAKQKTEHEEEGTAIKHRGHLAECEVYLTSSDRDSKKPPQHNKVFLN
AFLLRVKEREHDTQGNKEHVGGVVGRVVGEMVHKQEGDEGGAKGGAKGGA
NGGAVIEAKKEDDDDAKAVSPSKLFLLSDPGVGADNMMYMAGEEDRRGGL
GVHDEAPRPKRRRCFTGEPSITW*
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mRNA from alignment at C-linearis_contig107:169420..170353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig107.1027.1 ID=mRNA_C-linearis_contig107.1027.1|Name=mRNA_C-linearis_contig107.1027.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=934bp|location=Sequence derived from alignment at C-linearis_contig107:169420..170353- (Chordaria linearis ClinC8C monoicous)
GTGGAGATGCAGCTTTTGGCGAAGCAGAAAACTGAACACGAGGAAGAGGG
GACGGCGATCAAGCACCGGGGACATCTTGCAGAGTGTGAAGTGTATCTTA
CCTCCTCGGACCGAGACTCCAAGAAGCCGCCGCAGCACAACAAGGTCTTT
CTCAACGCATTCCTGCTGCGGGTGAAAGAGCGAGAACACGACACACAGGG
TAACAAGGAACATGTGGGAGGAGTCGTGGGACGAGTCGTGGGAGAGATGG
TGCACAAGCAAGAGGGCGACGAAGGAGGAGCCAAGGGAGGAGCCAAGGGA
GGAGCCAATGGAGGAGCCGTGATAGAGGCGAAAAAAGAGGTGAGCATAGA
CATGTTTTTTTTTAAACACGATTGACCAAGCGATCACATCACGTGTTCTA
CTGAAAGATAGATTACACCTTTAACTAACGCCCACATTTATCATTTTTCA
ATTTTTTGCAAATCAATCAGGACGACGACGACGCTAAGGCAGTGTCACCC
TCAAAACTATTCCTTCTGTCCGACCCCGGTGTTGGCGCGGATAATATGAT
GTATATGGCGGGCGAAGAAGACCGCCGGGGAGGGTTGGGCGTTCACGACG
AGGCTCCCCGCCCGAAGCGCCGTCGCTGTTTCACCGGAGAGCCAAGCATT
ACTTGGTGAATCGCGCGAAGAACGAAGAATGATACCAACCATATAGGTAT
CCTATCCTAGATAGGCCACGTATTTTTAGCATACATACACACACACACAC
ACACACAACAGGCCCAAGGGCTAGACTTTCGCCGTGCGAAGAGCGGTCGT
TTGCTTCTTGTGCAAAATAGCAGGAGCCATGTTCGTTCACCTGTCATTCA
TAGTATTGGTGTAGGGAGGAAGCAGGGCGGGACATGGGTAAAGGCAAGGT
GAGGTGAGGAGAGGAGAGGAGAAGTGCATAAGGG
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Coding sequence (CDS) from alignment at C-linearis_contig107:169420..170353-

>mRNA_C-linearis_contig107.1027.1 ID=mRNA_C-linearis_contig107.1027.1|Name=mRNA_C-linearis_contig107.1027.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig107:169420..170353- (Chordaria linearis ClinC8C monoicous)
ATGCAGCTTTTGGCGAAGCAGAAAACTGAACACGAGGAAGAGGGGACGGC
GATCAAGCACCGGGGACATCTTGCAGAGTGTGAAGTGTATCTTACCTCCT
CGGACCGAGACTCCAAGAAGCCGCCGCAGCACAACAAGGTCTTTCTCAAC
GCATTCCTGCTGCGGGTGAAAGAGCGAGAACACGACACACAGGGTAACAA
GGAACATGTGGGAGGAGTCGTGGGACGAGTCGTGGGAGAGATGGTGCACA
AGCAAGAGGGCGACGAAGGAGGAGCCAAGGGAGGAGCCAAGGGAGGAGCC
AATGGAGGAGCCGTGATAGAGGCGAAAAAAGAGATGCAGCTTTTGGCGAA
GCAGAAAACTGAACACGAGGAAGAGGGGACGGCGATCAAGCACCGGGGAC
ATCTTGCAGAGTGTGAAGTGTATCTTACCTCCTCGGACCGAGACTCCAAG
AAGCCGCCGCAGCACAACAAGGTCTTTCTCAACGCATTCCTGCTGCGGGT
GAAAGAGCGAGAACACGACACACAGGGTAACAAGGAACATGTGGGAGGAG
TCGTGGGACGAGTCGTGGGAGAGATGGTGCACAAGCAAGAGGGCGACGAA
GGAGGAGCCAAGGGAGGAGCCAAGGGAGGAGCCAATGGAGGAGCCGTGAT
AGAGGCGAAAAAAGAGGACGACGACGACGCTAAGGCAGTGTCACCCTCAA
AACTATTCCTTCTGTCCGACCCCGGTGTTGGCGCGGATAATATGATGTAT
ATGGCGGGCGAAGAAGACCGCCGGGGAGGGTTGGGCGTTCACGACGAGGC
TCCCCGCCCGAAGCGCCGTCGCTGTTTCACCGGAGAGCCAAGCATTACTT
GGTGAGACGACGACGACGCTAAGGCAGTGTCACCCTCAAAACTATTCCTT
CTGTCCGACCCCGGTGTTGGCGCGGATAATATGATGTATATGGCGGGCGA
AGAAGACCGCCGGGGAGGGTTGGGCGTTCACGACGAGGCTCCCCGCCCGA
AGCGCCGTCGCTGTTTCACCGGAGAGCCAAGCATTACTTGGTGA
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