mRNA_C-linearis_contig106.1007.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig106.1007.1
Unique NamemRNA_C-linearis_contig106.1007.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig106contigC-linearis_contig106:445108..446958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig106.1007.1prot_C-linearis_contig106.1007.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig106 445135..445681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.2102141-UTR-C-linearis_contig106:445107..4451341622927398.2102141-UTR-C-linearis_contig106:445107..445134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445108..445134 -
1690879677.004998-UTR-C-linearis_contig106:445107..4451341690879677.004998-UTR-C-linearis_contig106:445107..445134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445108..445134 -
1622927398.2363877-UTR-C-linearis_contig106:445681..4457011622927398.2363877-UTR-C-linearis_contig106:445681..445701Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445682..445701 -
1690879677.0352378-UTR-C-linearis_contig106:445681..4457011690879677.0352378-UTR-C-linearis_contig106:445681..445701Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 445682..445701 -
1622927398.2476258-UTR-C-linearis_contig106:446824..4469581622927398.2476258-UTR-C-linearis_contig106:446824..446958Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 446825..446958 -
1690879677.0443695-UTR-C-linearis_contig106:446824..4469581690879677.0443695-UTR-C-linearis_contig106:446824..446958Chordaria linearis ClinC8C monoicousUTRC-linearis_contig106 446825..446958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.2187936-CDS-C-linearis_contig106:445134..4451571622927398.2187936-CDS-C-linearis_contig106:445134..445157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 445135..445157 -
1690879677.0145693-CDS-C-linearis_contig106:445134..4451571690879677.0145693-CDS-C-linearis_contig106:445134..445157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 445135..445157 -
1622927398.2272336-CDS-C-linearis_contig106:445437..4456811622927398.2272336-CDS-C-linearis_contig106:445437..445681Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 445438..445681 -
1690879677.0258644-CDS-C-linearis_contig106:445437..4456811690879677.0258644-CDS-C-linearis_contig106:445437..445681Chordaria linearis ClinC8C monoicousCDSC-linearis_contig106 445438..445681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig106.1007.1

>prot_C-linearis_contig106.1007.1 ID=prot_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MPFGSDDVAAFMLLASMMFLCDDEDEFLLEALQMADYNESGDFLEGSTRT
GKPKPHDERWWEEKSARHLSSAQFRSFFLGAGSLRSKS*
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mRNA from alignment at C-linearis_contig106:445108..446958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig106.1007.1 ID=mRNA_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1851bp|location=Sequence derived from alignment at C-linearis_contig106:445108..446958- (Chordaria linearis ClinC8C monoicous)
CAGCCTCCAAAGCGCGACAGGGGCTCTCTCCCATCTCCTCCTACCAACAC
GCGAGTGTCTGTGGTCTTGCCCCAGTGAAGAGGGTCTCAGGACGCATAAT
CGGGAGGAGCCGTCATAAATAATACACGCACCAGGTGGGGCCGAAGAAGA
TTCCACACCCATGTTTACTTTGCGTCCCGCGGTCAAGTCTGAGCCGCTTT
CCAGGGCCGTAGGAGCGCGCGGTTTGAGCGAGACGCCTGCCCCTTTAGGA
AACAGCAGTCGAGACAGGCACACGCCGGTTTTCCAGTAAACTTTACGCTC
TGCACCAAGAATGGGCGGCGCGACAGCCCACATTTCGTGTTCGGAGCCTC
TTCGGAGCACACCACCTGGAGCACACAAAAAGCAAAAAAGCAGCACCTCC
CACAGTCCCGTGAACACGCGCCGCCGCCTAGCGCTGTCGGGGTTCTTCTT
GGCTCCTGTATAGTACCTGGTACAGTAGTATATATCTAAAGTATATGCAC
TCTTTCTATAGATGGCACCTGAAGGGTTATCTTGAAGCGGAGCTGCAGAT
GTAGGGTTAAATGCACCTGCCAGGTCTGCTGGTCTAGATTTCAGTATACT
GCTGGAGAGCAGCTCGTCTAGACTCCTACTTTACTAGTGTAATAGTCTCT
ACTCTGTCTCTGCGGTGTAGGCCCCCGGGACTATGGGTGTACTGTTGTAG
TGTTTTATGTACACGGACTAGTTTTACCAGACGACCGGCTGGGCGTGAGC
ATCGGCTGCATCTGGGTTACTCTCTCTTGCCTCGCACATAATTGCTGCTG
CGGCACGTACTTGCTGCTGCGCACGTAGCTGCTGCTGCGCGCGGTGCAGG
TACGGCGGGCCGGTACTGTTGTAGACTGTAAATATCTGCCACGCCGACGA
TGTGGAAACAATTCCTAGCCCTATTCGTGTGCACTTTTTCCGAACTCCAC
GCAAGTACCATGATAGGGTTGGGAGTGCCTTCTGGCGGAACCTCCGAGGG
CCCATCAATATAGCTGCCCTCAATTTTACGTGCGTGCTAATCCACTTTCG
TAAATCTCGTTGTTGTACATAGCGTGCGAAAGCTCAAGCATTGCGTGATC
AATCGACGAACGGTACAAATTAAAACTCCTGTTGTGTCACGAGAAGGTGC
GTGTGCCACAAAGGACTGCATGGGTGTAAAGCCCGTGCGAAATCCTGACC
TTGACGCTTATCGCTCCTTCTTGTCGGCCCGTTCCCCGCGTCTCTGTCTT
CCCACAGAGAGCATCTGCTGCTCAGCCATGCCTTTCGGATCGGATGACGT
CGCGGCCTTTATGTTGCTTGCGAGCATGATGTTCCTATGCGACGATGAAG
ACGAGTTCCTACTGGAAGCTCTGCAGATGGCCGACTACAACGAATCGGGC
GACTTCCTGGAGGGCTCGACGAGAACGGGGAAGCCCAAACCGCATGACGA
GCGGTGGTGGGAGGAGAAATCGGCGAGACACCTGAGCAGCGCTCAGTTCA
GGTCCTTTTTTTTAGGTGCAGGTGCGAACAGTTTATTATTTTACTTTCAG
TGCAAAGGCGGGTTGCCGTATCGCCTAATACATGAGGTTGTCGCAGCACC
GTACCCCGTCCCTCCTCCCGAGTGCCACCTATGCGCTAGATGTGGTACCG
TTGAGCATGCCAATACTTGCAGATCAAACAAGGAAATGATGACCGCCTCC
AGGCACCCCCACAGCCTCGTGGCCTTACCTTAAAATCAGGCAGGCATGCT
TACATCGTTCTCGCTCTGCCTGTCAAACATGTCCACCTCCCAACTTGACA
GGAAGCCTACGTTCAAAGAGCTAGTGAAGAGGCTGTATGGCACGACGGAC
T
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Coding sequence (CDS) from alignment at C-linearis_contig106:445108..446958-

>mRNA_C-linearis_contig106.1007.1 ID=mRNA_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig106:445108..446958- (Chordaria linearis ClinC8C monoicous)
ATGCCTTTCGGATCGGATGACGTCGCGGCCTTTATGTTGCTTGCGAGCAT
GATGTTCCTATGCGACGATGAAGACGAGTTCCTACTGGAAGCTCTGCAGA
TGGCCGACTACAACGAATCGGGCGACTTCCTGGAGGGCTCGACGAGAACG
GGGAAGCCCAAACCGCATGACGAGCGGTGGTGGGAGGAGAAATCGGCGAG
ACACCTGAGCAGCGCTCAGTTCAGGTCCTTTTTTTTAGGTGCAGATGCCT
TTCGGATCGGATGACGTCGCGGCCTTTATGTTGCTTGCGAGCATGATGTT
CCTATGCGACGATGAAGACGAGTTCCTACTGGAAGCTCTGCAGATGGCCG
ACTACAACGAATCGGGCGACTTCCTGGAGGGCTCGACGAGAACGGGGAAG
CCCAAACCGCATGACGAGCGGTGGTGGGAGGAGAAATCGGCGAGACACCT
GAGCAGCGCTCAGTTCAGGTCCTTTTTTTTAGGTGCAGGAAGCCTACGTT
CAAAGAGCTAGGAAGCCTACGTTCAAAGAGCTAG
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