mRNA_C-linearis_contig105.924.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.924.1
Unique NamemRNA_C-linearis_contig105.924.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 2.860e-106
Identity = 220/466 (47.21%), Postives = 259/466 (55.58%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGWRRQLTSPSYW*SDSRSFERTEEIFSRAARLRRNDPEGGRACT-FHDELWNG---GKRLLLGDDRALAKMDGHAPASPLQHGEVGL--QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRGVEVVGGGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLR 1380
            FMGPLGKGSWHEWED+HLVALL TLWYN SRSDSSCISWRR +NL+   KGV W+CKFIRPAETRWMV+ DAAALLEERWD                        +S  MLDDPL+RVHAKF VALRK VLSWAYNWIRGEGGYF++GTGGVAERLP G    R   +  +     +  ER++ +     RL         AC+ F++  W G   G    +G + A A +    P         G   Q   RE           +   G+ +  AA A     R   +E      H  + V                    V +V+ E                         + P   G  +     FPQLYEWACHA++FAPIHQQLVES  STYDT TQKHDSRE+DIVRLGQF SR SRRVER +++N E+R  GD+AI VA  LKK+ASHAVPNERQLR
Sbjct:    6 FMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISWRRVKNLVFRAKGVMWICKFIRPAETRWMVIRDAAALLEERWD------------------------ESTYMLDDPLIRVHAKFCVALRKAVLSWAYNWIRGEGGYFLEGTGGVAERLPPGM---RLAEAADFSLLLVKRLERSQRMSM--TRL---------ACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE----------NKLTLGMFSKLAASAE---FREE-LERYAASAHEKKKV--------------------VSDVDVEN------------------------QTPRVSGFDM--IWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLR 373          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 5.580e-103
Identity = 227/476 (47.69%), Postives = 277/476 (58.19%), Query Frame = 1
Query:   91 RSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGW--------------RRQLTSPSYW*SDSRSF-ERT---EEIFSRAAR-LRRNDPEGGRAC----------TFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQ-------HGE-VGLQFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRGVEVVGGGT-HVSRSVGG*PFGSNYHPGKR*ADTWHVF-EVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGL-----GL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1386
            RSDSSCISW RFQNL+ G KGV W CKFIRPAETRWMVVWDAAALLE+RWD VRWLH++WAA+KLLGTPFMDYW+KSLCMLDDPL+RVHAKF VALRKVVLSWAYNWIRGEGGY ++G GGVAERLP G                       P  +  D  ++ E+T   EE+ + AA+ L   DP     C           F +E  +G  R ++        M  H P S  +        G+  G +  +   VG      +   R  + A +            G E VG    H    +            ++   T+ +F ++      +G V E   + ARE+   +    + D+E       G      FP LYEWA HAI FAPIHQQLV+SV STYDTCTQKHDSREI IVRLGQFRS QSRRV+R +ATN E+R+AGD+ I VAR LKK+A+ A+PN+ QLRKR
Sbjct:  285 RSDSSCISWERFQNLVFGCKGVKWGCKFIRPAETRWMVVWDAAALLEDRWDEVRWLHLEWAAAKLLGTPFMDYWFKSLCMLDDPLIRVHAKFCVALRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSANAAQTLLLFDPVP--YCPMLQLAHFMRNFQNEK-SGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVG------QEYARASLLALWPE-------LNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEV-ERYSLSAREK---KEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKR 740          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.600e-64
Identity = 159/471 (33.76%), Postives = 227/471 (48.20%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGWRRQLTSPSYW*SDSRSFERTEEIFSRAA--RLRRNDPEGGRACTFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQHGEVGL-QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRG--RGVEVVGGGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEV---------ECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPN 1365
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS+ S  S++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L  T F +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL                     +  +  + +  A   R+R    +  R  +F  EL  G   +     R +  M  H    PL    +G   F  R  + G GG       P     F   A      G  R        T +++ +GG          ++   T  +F           E E +   G G+  +  +  +G +  A               + P LY   CH  YF PIHQQL+E+ FS YD+C +K D  E+D+VR+G ++S +SR +   +A + ++R AG + ++ A   K  +    PN
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLFPAMRLVEAADFSCLLLQKLETIRKDPQTYVAALLDRVRTTLSDPMRGESFRVELQRGQFFIAEFKKRWIKSMQRHQEL-PLSMARIGCPSFYARTGIMG-GGAVEQAVGPEFARAFPHVAWPGLYEGEPRTERERQYRTQLAKDLGG-----TTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEIDESAPKGTSALA------------RLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 2.290e-63
Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 2
Query:  659 MIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFP 1099
            MI RW  WMDMHQHLPYSMARLACSSF+E KW GSE+AFEHAVGQE+ARA LL LWPELYE AEW  W+EEH +LE+L  DL EA TT+ KD+LT GMFSKL+ASA FR E+E+YA SA EK+ +V+D   ENQ  RVSGF+MIW+FP
Sbjct:    1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFP 148          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 2.780e-63
Identity = 167/488 (34.22%), Postives = 233/488 (47.75%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGW-------RRQLTSPSYW*SDSRSF-----ERTEEIFSRAARLRRNDPEGGRACTFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQHGEVGL-QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRG---------VEVVG--GGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1386
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS+SS  +++R++ +++        W+ KF+RPAETRWMVV D A LL +RW+ V WL  ++AA  L  T F +YW +S  ML DPL+RVH  F+  L +++  WAYNWIRG+GG+F+KG G V  +L  G          R  L        D +++     ER +   S A            A  F                R +  M+ H    PL    +G   F  R  + G G        P     F   A +    G            ++V   GGT  +R      FG          D+      E E +   G G+  +     +G +  A               +FP LY+  CH  YF PIHQQL+E+ FS +D+C QK D  E+DIVR+G ++S +SR +  ++AT  ++R AG + +E AR  K  +    P E   RKR
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKLLCKRWEQVEWLFCEYAARNLNKTTFRNYWLQSAYMLRDPLVRVHVMFTARLGELLFDWAYNWIRGKGGFFLKGEG-VGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAM-----------AKLFMTNFSEDKGFFAEFKQRWIKWMERHQQL-PLSMARIGCPSFFARTGIMGEGA-VEQAVGPEFARAFLHVAWSALYEGEPRTEREREYRTQLVKDLGGTTDARRKDELTFGLFSR-----IDSDRSVRNELEQYANSGWGDKEVDQGAPKGTSALA------------RLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.870e-52
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 468
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS SS  +++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L  T F +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRL 162          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 9.250e-52
Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 477
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS SS   ++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L  T F +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL  G
Sbjct:    6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 165          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.630e-39
Identity = 89/224 (39.73%), Postives = 115/224 (51.34%), Query Frame = 1
Query:    1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKL------------------------------LG---------------------------------TPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 477
            FMGPLGKGSWHEWE  H+ +LLG +WYNTSRS+SS  +++R++ ++         W+ KFIRPAETRWMVV D A LL ERW+ V WL  ++AA  L                              LG                                 T + +YW +S CML DPL+RVH  F+  L +++  WAYNWI G+GG+F+KG G V  RL  G
Sbjct:    6 FMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQRWKRIVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAAKGSXCERWEQVEWLFCEYAAGNLNKTTYRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 228          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.430e-39
Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  683 MDMHQHLP-YSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVI--DVLGENQTARVSGFEMIWNFP 1099
            MD H   P     +++    YE KW G+++A EHAVG+EFARALL+ LWPE  E AEWR W+EEH  L +LEGDL EATT   KDKLT GM+++L+ SA FR+E+E YA+SAHEK+ V+  D+  +N   RVS F MIWNFP
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFP 142          
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KE81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE81_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.660e-33
Identity = 69/134 (51.49%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   73 LWYNTSRSDSSCISWRRFQNLI--EGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 468
            +WYNTSRS+SS  ++ R+Q L+  E      W  KFI+PAETRWMVV D A +L ERWD V WL  +WAA  +  T + +YW KS   L DPLM V   F+  L ++V  WAYNWIRG+GG+F+K   GV  RL
Sbjct:    2 VWYNTSRSNSSNTNFLRWQKLVADEFPAAKPWTKKFIKPAETRWMVVMDGAKILFERWDEVAWLFGEWAACNIGKTTYRNYWLKSAVALQDPLMLVQVMFAARLGELVFDWAYNWIRGKGGFFLK-CEGVGRRL 134          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JN38_9PHAE2.860e-10647.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE5.580e-10347.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI13_9PHAE1.600e-6433.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ3_9PHAE2.290e-6370.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI2.780e-6334.22Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KSR2_9PHAE2.870e-5255.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW26_9PHAE9.250e-5254.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KH75_9PHAE2.630e-3939.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ1_ECTSI5.430e-3955.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE81_9PHAE1.660e-3351.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:12911..14617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1386
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.924.1prot_C-linearis_contig105.924.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 12914..13429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.89716-UTR-C-linearis_contig105:12910..129131622927391.89716-UTR-C-linearis_contig105:12910..12913Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 12911..12913 +
1690879672.8703446-UTR-C-linearis_contig105:12910..129131690879672.8703446-UTR-C-linearis_contig105:12910..12913Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 12911..12913 +
1622927391.9167128-UTR-C-linearis_contig105:13429..135141622927391.9167128-UTR-C-linearis_contig105:13429..13514Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 13430..13514 +
1690879672.887215-UTR-C-linearis_contig105:13429..135141690879672.887215-UTR-C-linearis_contig105:13429..13514Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 13430..13514 +
1622927391.9262059-UTR-C-linearis_contig105:13835..146171622927391.9262059-UTR-C-linearis_contig105:13835..14617Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 13836..14617 +
1690879672.895618-UTR-C-linearis_contig105:13835..146171690879672.895618-UTR-C-linearis_contig105:13835..14617Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 13836..14617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927391.907093-CDS-C-linearis_contig105:12913..134291622927391.907093-CDS-C-linearis_contig105:12913..13429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 12914..13429 +
1690879672.8792274-CDS-C-linearis_contig105:12913..134291690879672.8792274-CDS-C-linearis_contig105:12913..13429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 12914..13429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.924.1

>prot_C-linearis_contig105.924.1 ID=prot_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKG
VTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFM
DYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGG
VAERLPQGCGWRRQLTSPSYW*
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mRNA from alignment at C-linearis_contig105:12911..14617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.924.1 ID=mRNA_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1707bp|location=Sequence derived from alignment at C-linearis_contig105:12911..14617+ (Chordaria linearis ClinC8C monoicous)
TTCATGGGCCCTCTTGGCAAAGGTTCCTGGCATGAGTGGGAGGACCACCA CCTCGTAGCTCTGCTGGGAACTCTTTGGTACAACACAAGCAGGTCTGATT CGTCTTGCATTTCCTGGCGCCGTTTTCAAAACCTCATCGAGGGCGTGAAG GGCGTAACCTGGGTGTGCAAGTTCATCAGACCCGCGGAAACACGCTGGAT GGTGGTTTGGGATGCGGCCGCCTTGCTTGAAGAGCGTTGGGATGCGGTTA GGTGGCTGCATATGGACTGGGCTGCGTCAAAGCTTCTTGGCACGCCCTTC ATGGATTACTGGTACAAGTCGCTCTGCATGTTGGACGACCCTCTCATGCG AGTACACGCGAAGTTCAGCGTAGCTCTCAGAAAAGTAGTGCTCAGCTGGG CGTACAACTGGATTCGCGGGGAAGGTGGCTACTTCGTCAAGGGTACGGGT GGCGTGGCGGAGCGTCTACCCCAGGGATGCGGTTGGCGGAGGCAGCTGAC TTCTCCCTCCTACTGGTGAAGCGACTCGAGGAGCTTCGAGCGCACCGAGG AAATATTTTCCAGAGCTGCTCGCCTTCGCCGAAACGACCCTGAAGGAGGC CGAGGTGGGTCAGGACAAAGCGTTTCTAGGTTGTAGGGTTGACGTGCACC CGCAGTAAAGGGTTGGTTGGACCCGGCGTGCACGAGCTGCTTCGTCCCTG CTGTCCTGAGCACTCGCAGTCGGCAAGCAGTGCCCGCCCTTTCGTTTGTC ACCCAATATTGCTGCCAAAAAAATAAACCGCCCGCGCTCTCTCTCTTCTT TCTGCTAAATGTTTTCCTGCTTTCTTTTGTGCGCTTCCCTGCCGCCCCCG ACGGGCAGCTAATAGCGCCGTCCAAACCTTACACCTTGCACCCGTCGACT CCCCCCCTACTGCCGTATGCTGCAGCTTGTACATTTCATGATGAACTTTG GAACGGGGGAAAGCGGCTTCTTTTGGGAGATGATCGAGCGCTGGCTAAAA TGGATGGACATGCACCAGCATCTCCCCTACAGCATGGCGAGGTTGGCTTG CAGTTCGTTCTACGAGAGCAAGTGGGTGGGTTCGGAGGAGGCTTTCGAAC ACGCTGTCGGCCAGGAGTTTGCGCGGGCTTTGCTGCTGGTGCTTTGGCCT GAGCTGTACGAGGACGCGGAGTGGAGGTCGTGGGAGGAGGAACACACGTT TCTCGAAGTGTTGGAGGGTGACCTTTTGGAAGCAACTACCACCCAGGCAA AAGATAAGCTGACACTTGGCATGTTTTCGAAGTTGAGTGCGAGTGCTGGG TTCAGGGAGGAGTTGGAGAAGTATGCCTCATCTGCGCACGAGAAGAGGGT TGTAATCGACGTGCTTGGCGAGAACCAGACAGCGAGGGTCTCGGGCTTTG AAATGATTTGGAATTTCCCCAGCTCTACGAATGGGCGTGCCATGCAATTT ATTTTGCCCCAATTCATCAGCAACTAGTCGAGAGCGTTTTCTCCACGTAC GATACATGCACACAGAAACATGATTCTAGGGAGATTGATATCGTTCGCCT TGGGCAGTTCCGCTCACGCCAGTCTAGGAGAGTAGAGCGATCGAATGCCA CCAACGCCGAAGTCCGGAAAGCAGGAGACGAGGCAATAGAAGTTGCGAGG GCGTTGAAAAAGACTGCCTCTCACGCGGTTCCGAATGAGAGGCAGCTTCG AAAACGA
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Coding sequence (CDS) from alignment at C-linearis_contig105:12911..14617+

>mRNA_C-linearis_contig105.924.1 ID=mRNA_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig105:12911..14617+ (Chordaria linearis ClinC8C monoicous)
ATGGGCCCTCTTGGCAAAGGTTCCTGGCATGAGTGGGAGGACCACCACCT
CGTAGCTCTGCTGGGAACTCTTTGGTACAACACAAGCAGGTCTGATTCGT
CTTGCATTTCCTGGCGCCGTTTTCAAAACCTCATCGAGGGCGTGAAGGGC
GTAACCTGGGTGTGCAAGTTCATCAGACCCGCGGAAACACGCTGGATGGT
GGTTTGGGATGCGGCCGCCTTGCTTGAAGAGCGTTGGGATGCGGTTAGGT
GGCTGCATATGGACTGGGCTGCGTCAAAGCTTCTTGGCACGCCCTTCATG
GATTACTGGTACAAGTCGCTCTGCATGTTGGACGACCCTCTCATGCGAGT
ACACGCGAAGTTCAGCGTAGCTCTCAGAAAAGTAGTGCTCAGCTGGGCGT
ACAACTGGATTCGCGGGGAAGGTGGCTACTTCGTCAAGGGTACGGGTGGC
GTGGCGGAGCGTCTACCCCAGGGATGCGGTTGGCGGAGGCAGCTGACTTC
TCCCTCCTACTGGTGAATGGGCCCTCTTGGCAAAGGTTCCTGGCATGAGT
GGGAGGACCACCACCTCGTAGCTCTGCTGGGAACTCTTTGGTACAACACA
AGCAGGTCTGATTCGTCTTGCATTTCCTGGCGCCGTTTTCAAAACCTCAT
CGAGGGCGTGAAGGGCGTAACCTGGGTGTGCAAGTTCATCAGACCCGCGG
AAACACGCTGGATGGTGGTTTGGGATGCGGCCGCCTTGCTTGAAGAGCGT
TGGGATGCGGTTAGGTGGCTGCATATGGACTGGGCTGCGTCAAAGCTTCT
TGGCACGCCCTTCATGGATTACTGGTACAAGTCGCTCTGCATGTTGGACG
ACCCTCTCATGCGAGTACACGCGAAGTTCAGCGTAGCTCTCAGAAAAGTA
GTGCTCAGCTGGGCGTACAACTGGATTCGCGGGGAAGGTGGCTACTTCGT
CAAGGGTACGGGTGGCGTGGCGGAGCGTCTACCCCAGGGATGCGGTTGGC
GGAGGCAGCTGACTTCTCCCTCCTACTGGTGA
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