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Homology
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 296 bits (758), Expect = 3.520e-91 Identity = 167/217 (76.96%), Postives = 175/217 (80.65%), Query Frame = 1
Query: 16 MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGTAPMSTSPSPA---PAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDLCWAPDGRSLLSASFDQV 657
MK KNSSSSSES+FRAQYES CKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAG+AP S S +PA P ++ G+V PPSR VFDPRVGLATAHLD+L LM G A GRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYP+SQVACLEGHRQLISDLCWAPDGRSLLSASFDQ
Sbjct: 1 MKGKNSSSSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLAPAAARPGASTGGNVTG------PPSREVFDPRVGLATAHLDALGLMNGGGIGVGSSGSGF------AAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQT 205
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match: D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 9.250e-41 Identity = 96/147 (65.31%), Postives = 103/147 (70.07%), Query Frame = 1
Query: 16 MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGTAPMSTS---PSPAPAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKL 447
MKSKNSSSSSES+FRAQYES CKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAG+AP S S A+ G+V PPSR VFDPRVG+ATAHLDSL LM G + GR+LVAEAKL
Sbjct: 1 MKSKNSSSSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLXXXXXXXXAATGGNVTG------PPSRKVFDPRVGIATAHLDSLGLMNGGGIRVGSNGIR------IPAGRILVAEAKL 135
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.000e-21 Identity = 71/161 (44.10%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 121 ERDIDELKKSVYELSYMLSMQGSAGTAPMSTSPSPAPAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISD 603
ER+ +ELKKSVYELSY+LS Q S G A S ++ PPSR P +AH S A R L KL GHTAAVY FSP +LVAS GFDRT+RLWEG YP SQVACL HRQL+SD
Sbjct: 2 ERENEELKKSVYELSYVLSTQTSTGAAAKVFS------------LDGADRAPPPPSRPGHPPSPFKVSAHAHGAS---------------------AAPDRRLNPAGKLVGHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSD 129
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match: A0A1V8SS61_9PEZI (Uncharacterized protein n=4 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SS61_9PEZI) HSP 1 Score: 61.2 bits (147), Expect = 1.190e-6 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 442 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDLCWAPDGRSLLSASFDQV*GFLTARLCTGEQSRAG*SRAEQSRCCLVMDR 753
+++GH+A ++ A+FSP + +ASAG DR + LW + + L GH+ + DL W+ D + + SAS D + + TGE+ R E C V R
Sbjct: 55 EMTGHSAEIFAARFSPSGAHIASAGADRDILLWHSSGDCANYGTLVGHKSAVLDLHWSRDSQVIYSASADMH--IASWNVETGERIRRHVGHEEVINCIDVSKR 156
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL) HSP 1 Score: 52.8 bits (125), Expect = 8.370e-5 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 466 VYVAKFSPRDSLVASAGFDRTLRLWEGAY-PFSQVACLEGHRQLISDLCWAPDGRSLLSASFD 651
+Y A FSP SL+A G+D + LW GA + L GH +S L +APDGR+LLSAS D
Sbjct: 2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGD 64
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 85.1 |
| Seed ortholog evalue | 4.3e-14 |
| Seed eggNOG ortholog | 4787.PITG_02135T0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | mRNA splicing, via spliceosome |
| EggNOG OGs | KOG0282@1,KOG0282@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 1264 |
| Cds size | 645 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927388.5392337-UTR-C-linearis_contig104:448975..448990 | 1622927388.5392337-UTR-C-linearis_contig104:448975..448990 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 448976..448990 + |
| 1690879670.8607657-UTR-C-linearis_contig104:448975..448990 | 1690879670.8607657-UTR-C-linearis_contig104:448975..448990 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 448976..448990 + |
| 1622927388.6072693-UTR-C-linearis_contig104:452004..452608 | 1622927388.6072693-UTR-C-linearis_contig104:452004..452608 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 452005..452608 + |
| 1690879670.9314811-UTR-C-linearis_contig104:452004..452608 | 1690879670.9314811-UTR-C-linearis_contig104:452004..452608 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig104 452005..452608 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927388.550304-CDS-C-linearis_contig104:448990..449064 | 1622927388.550304-CDS-C-linearis_contig104:448990..449064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 448991..449064 + |
| 1690879670.872212-CDS-C-linearis_contig104:448990..449064 | 1690879670.872212-CDS-C-linearis_contig104:448990..449064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 448991..449064 + |
| 1622927388.5591464-CDS-C-linearis_contig104:450047..450141 | 1622927388.5591464-CDS-C-linearis_contig104:450047..450141 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450048..450141 + |
| 1690879670.8820896-CDS-C-linearis_contig104:450047..450141 | 1690879670.8820896-CDS-C-linearis_contig104:450047..450141 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450048..450141 + |
| 1622927388.5707881-CDS-C-linearis_contig104:450675..450745 | 1622927388.5707881-CDS-C-linearis_contig104:450675..450745 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450676..450745 + |
| 1690879670.9009569-CDS-C-linearis_contig104:450675..450745 | 1690879670.9009569-CDS-C-linearis_contig104:450675..450745 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450676..450745 + |
| 1622927388.5832322-CDS-C-linearis_contig104:450987..451181 | 1622927388.5832322-CDS-C-linearis_contig104:450987..451181 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450988..451181 + |
| 1690879670.9100204-CDS-C-linearis_contig104:450987..451181 | 1690879670.9100204-CDS-C-linearis_contig104:450987..451181 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 450988..451181 + |
| 1622927388.595297-CDS-C-linearis_contig104:451791..452004 | 1622927388.595297-CDS-C-linearis_contig104:451791..452004 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 451792..452004 + |
| 1690879670.92053-CDS-C-linearis_contig104:451791..452004 | 1690879670.92053-CDS-C-linearis_contig104:451791..452004 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 451792..452004 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.908.1 >prot_C-linearis_contig104.908.1 ID=prot_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp
MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELS YMLSMQGSAGTAPMSTSPSPAPAVASSGHVNEMKSEVRPPSRAVFDPRVG LATAHLDSLSLMGGGGMGVGVGVVGGGGGGGVATGRVLVAEAKLSGHTAA VYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDLCWA PDGRSLLSASFDQV* back to topmRNA from alignment at C-linearis_contig104:448976..452608+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.908.1 ID=mRNA_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3633bp|location=Sequence derived from alignment at C-linearis_contig104:448976..452608+ (Chordaria linearis ClinC8C monoicous) GCTATCTAGGCCTCAATGAAGAGCAAGAACAGCTCTTCCTCCTCTGAGAG
CTATTTCAGGGCTCAGTACGAGAGTGCGTGCAAGGAGAGGTGAGCTCGAT
TCAAAGGGTGATGGATGTGGGTGTTGGGGTACACACGTTTGTGTGACGAT
ATATATATCCAGCGCGCAATGATCCGCGTTTTATGTTGATACATAGATCG
AGAGGCCTACTTTGCTGGAGACAATGGTGGCGCCTGTATGATTGTGTGGT
AGAAAGGGAGGAGGAACGTGTGTGAAAAACGCTTCTGCTGCAGGGTGCGT
GTTGGGTTAGCTGCTTAGACCACAGACGCCTCTTCGTGTTTGATTCTGGT
GGAGGTAGTAATTCTTCTGTAATCCTTCGGATTGCCTTCGTATTGCAATG
GTTGAGAGCTCTTCCTCGGGCTGCGGTCGATGTACGATGTGCACACAACA
TGTGCAGCAGGGCCATGAATCTTTGGTCAGGACATCTGGCCGAAGGAGAG
CTCTGGGCCATTGGTGTTCTTGCATTCTCCAATGTGACCGGCGGCCAATA
GCTACTTTCCATTCAGTGCTGCTGCTGCTGCCTGTGATGTTCAAAACAAC
CCTAGTAGGTGGAAACGTAAATGTACCGCTCGCCGGCATGCCACGATTTG
TGTTTGATACCAGACCGTGGGCTATTATCATGTTGGGAAATTGAGTGGCA
TGATGCACATTTCACTGACGATGGACACGATATGCAATACAGACGCTGTC
GGTGGCCCGGGGCCACTGCTGGTGCCGCAAGGAAATGTCTTGTGTGTAGC
ACATGTGCACCCAAACTTCTACAGGTTAGATCTAGTCTTGAATAACTCGA
TCTCGAGAGAAAAAAAGAGGAAGCAAGCAGCAGGGCTGTTCTCGACAGTT
GACTTCACTTTCAGGTGACCAAACAATGTGGGCGACTACATTCTCGCATG
AACTGCGGCAGCTGTTTCCATCGTCCATTTCTCGGAGCCCCCCCCCCGTC
TATCTGTCCTCGTCCACACGTCCTACGCTGCTGCTGATATACACCACTGC
TGCTGTATGATGCGTTGCACAGGGATGCGCTTCAGGGCACAATCGAGGCG
CAGGAACGAGACATCGACGAGCTCAAGAAGAGCGTCTATGAGCTGTCCTA
CATGCTCTCCATGCAGGTCAGTCTAGGTGTAGACTACCGGTACATACTAA
GTACAACAGCTGCTTGATTGTTTGGTGGTGGACTTTCTCTGGGTGTCATC
CCATCACTCATCTTTCACATTGCCCCGCCCATTACAAGTAGAGACTAAAG
AGGGCGGGCCGAAAGCATGGTCGCCGGGTGCCACTAAATTCGGGATGCTA
AACCCGGACTGCTGTAGGGTGCGGATTGGAAGGAGCACACGCACACATGC
CTTCCTCGCTGCAAACAAACGTGTTTCCCGTGTTTTTGTCTGGTGTGGCT
CTGATTTTGACATTTTGACGCGCACCATCATGGTCAGAAAACAGATGACG
ATGCCGACTATTTACTGCTGTAGGTGAGCCGCAAAAGCTCTACAACGACA
ACGAGGACCCTCTGCTGCTGTGTCTGACCGTGTTTGGACCGTGCCGTCTC
CCTCCGATATTCAACACGCGCCCTGGGCGCAATCGACAACACAATCACCA
CCAACAACAACAACAACTACCACGAAACCGATGAAACCGATGAAAAAAAG
GGGAGCGCGGGCACGGCCCCGATGTCGACGTCGCCAAGCCCTGCCCCGGC
GGTAGCAAGTTCGGGACACGGTGAGTAGGAGTAGGAGTAGGAGTTTGAGA
ATGAGGGCTAGGAGCGTGCATATACCCGAACACGGTTGCTTCATCTGTCG
CTGCTGCAGGGGGCCCCGCGAACAAGCAGAACAAGACAACAAACCTCCCC
GTCACCGCCGCTCGAAATTCCCCAGCCCCCCCCCACCCCTTCCCGAAAAT
AAATCTCATGAGGGCACACCACTCAACTATACTACACCACGTTTTACGTT
TTCTCATCACAGTAAATGAAATGAAATCAGAGGTGCGGCCGCCAAGCCGT
GCGGTGTTCGACCCCCGGGTCGGCCTGGCGACGGCCCACCTCGACTCGCT
GAGCCTCATGGGCGGCGGCGGCATGGGCGTGGGCGTGGGCGTCGTCGGCG
GCGGCGGCGGGGGCGGCGTGGCGACCGGCCGCGTCCTCGTCGCGGAGGCC
AAGCTGGTGAGCGCAAGGCAAAGGAAAGGAAGAAGCACGTAGAAGTGAAC
ATGACTGCTGACTACGTGATTCGTGTAGTGTCACCCTGTGGTCGACCCGC
TGCTAGTGTGGCGTTATCAGACGGCCACCCACGACCCACGCCCTGGCCGG
CCGGGGCATTACAGATGGAGCCAGCAGCTATTGACAGCGGCATCAAAGTC
TGGAGCGTGTTTTTGCTGGGACGTGTGTAGGTCACCGTCGTTTCCCCTTC
GTCGAGAAGGCTCAGGCCAGGTTTGGTTCGGAAGCGCGTGTTTTTGTTGT
TCCTGGTTGACGCAACCACACTGGCGCTGGCTGCCCTCTGCGAAAGGAGC
TACCACCGCGGGCCCGGCCCAACCCTTGACCCCCCGTCTTTATAGCTCTC
AAAAAAGCTCAACGCTTAAATGGCTTTGCCGTGAGTTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTGTTCGCCGCCAGCATCGGCACCCGCTA
TACGTTGTTCATCCCTCCTCGCCCCACCTCACGCGCACACATTTATCGAT
GGTTGTATGTGCACCACCTCCTCTCCGCCGCCGCCCCGCCTTTCCCGTTT
GCCTTGCCTAACCCAGTCGGGGCACACGGCGGCCGTGTACGTGGCCAAGT
TTTCCCCGCGAGACAGCCTCGTGGCCTCCGCGGGGTTTGATCGCACCCTC
AGGCTGTGGGAGGGCGCCTACCCTTTCAGCCAGGTGGCGTGCCTGGAGGG
CCACCGGCAGCTGATCAGCGACCTCTGCTGGGCCCCCGATGGGAGATCGT
TGCTGAGCGCCTCCTTTGACCAGGTTTAGGGTTTCTTGACTGCTCGTTTG
TGCACAGGAGAGCAGAGCAGAGCAGGGTAGAGCAGAGCAGAGCAGAGCCG
GTGTTGCCTTGTTATGGACAGGGTCTTCTGTGTCGGAGGTGGACACACAC
GATTGCTGAGCTTTGCTCCGGCGCTGTTGGCTACCGTTGATGGCCTTTTT
TGTGTGACTGCTTTCGCGAGCACGACCACCGCCGTGGCTGCTCTGGAAAC
CAAGCTTTTTGTCGAGACGACGAAACACGCGCGGCTCCCTTCGCCTCCCC
TCACCCACCGCGCATCCTTCCTTGTACATGCCACATCTTCTGCGGAGTAG
TACTCCGTATAAAACAAAAAAGAAAAGCAGAAAAAAAAAAGAAAAAAAAA
CGCATTCGGTGTTTTGGACGAAACGGACAAAGTATCACCAACACTTTTGC
TCAGCAAGCTGTAGAAGACACACCTAAAACCATCCCCATTCTTGATGCCT
TGTCAAAAAACCATACCCGCATCTACCACCGCACCTACCATCGCACCGCA
CCTACCACATCCCATCCCATCCCAGACCGTCGCGAAGTGGGACACCGAAA
CGGGGCAAAGGGTGGGCAACATGCTCTCCCTCG back to topCoding sequence (CDS) from alignment at C-linearis_contig104:448976..452608+ >mRNA_C-linearis_contig104.908.1 ID=mRNA_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig104:448976..452608+ (Chordaria linearis ClinC8C monoicous) ATGAAGAGCAAGAACAGCTCTTCCTCCTCTGAGAGCTATTTCAGGGCTCA GTACGAGAGTGCGTGCAAGGAGAGATGAAGAGCAAGAACAGCTCTTCCTC CTCTGAGAGCTATTTCAGGGCTCAGTACGAGAGTGCGTGCAAGGAGAGGG ATGCGCTTCAGGGCACAATCGAGGCGCAGGAACGAGACATCGACGAGCTC AAGAAGAGCGTCTATGAGCTGTCCTACATGCTCTCCATGCAGGGATGCGC TTCAGGGCACAATCGAGGCGCAGGAACGAGACATCGACGAGCTCAAGAAG AGCGTCTATGAGCTGTCCTACATGCTCTCCATGCAGGGGAGCGCGGGCAC GGCCCCGATGTCGACGTCGCCAAGCCCTGCCCCGGCGGTAGCAAGTTCGG GACACGGGGAGCGCGGGCACGGCCCCGATGTCGACGTCGCCAAGCCCTGC CCCGGCGGTAGCAAGTTCGGGACACGTAAATGAAATGAAATCAGAGGTGC GGCCGCCAAGCCGTGCGGTGTTCGACCCCCGGGTCGGCCTGGCGACGGCC CACCTCGACTCGCTGAGCCTCATGGGCGGCGGCGGCATGGGCGTGGGCGT GGGCGTCGTCGGCGGCGGCGGCGGGGGCGGCGTGGCGACCGGCCGCGTCC TCGTCGCGGAGGCCAAGCTGTAAATGAAATGAAATCAGAGGTGCGGCCGC CAAGCCGTGCGGTGTTCGACCCCCGGGTCGGCCTGGCGACGGCCCACCTC GACTCGCTGAGCCTCATGGGCGGCGGCGGCATGGGCGTGGGCGTGGGCGT CGTCGGCGGCGGCGGCGGGGGCGGCGTGGCGACCGGCCGCGTCCTCGTCG CGGAGGCCAAGCTGTCGGGGCACACGGCGGCCGTGTACGTGGCCAAGTTT TCCCCGCGAGACAGCCTCGTGGCCTCCGCGGGGTTTGATCGCACCCTCAG GCTGTGGGAGGGCGCCTACCCTTTCAGCCAGGTGGCGTGCCTGGAGGGCC ACCGGCAGCTGATCAGCGACCTCTGCTGGGCCCCCGATGGGAGATCGTTG CTGAGCGCCTCCTTTGACCAGGTTTAGTCGGGGCACACGGCGGCCGTGTA CGTGGCCAAGTTTTCCCCGCGAGACAGCCTCGTGGCCTCCGCGGGGTTTG ATCGCACCCTCAGGCTGTGGGAGGGCGCCTACCCTTTCAGCCAGGTGGCG TGCCTGGAGGGCCACCGGCAGCTGATCAGCGACCTCTGCTGGGCCCCCGA TGGGAGATCGTTGCTGAGCGCCTCCTTTGACCAGGTTTAG back to top
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