mRNA_C-linearis_contig104.900.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.900.1
Unique NamemRNA_C-linearis_contig104.900.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.980e-47
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:   43 MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTRFKTRGRMGGGARLSSARRAS--VSDNSYGVGAGPGPGQWG 438
            MTELRRSSRVRQSAKH+S+YY P +K+ SLF+TP VRPR W+ A+   GYFTV RW P+DQQHLTA LHGGLTDP EIAAAK++LRA+SK STRFK+R RMG GARLS+ RR+S  V DNS   GA  G   WG
Sbjct:    1 MTELRRSSRVRQSAKHASTYYIPDEKN-SLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWG 133
[Close]
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.430e-12
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:   43 MTELRRSSRVRQSAKHSSSYYEPSD-KSASLFATPDVRPRKWQMAEAPVGYFTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTR-FKTRGRMGG 351
            MTELRRS RVRQSA+  +  Y     + AS+ A  D+R R+WQ  E  +G F V +W PK QQHLTA+LH    D        + L+     S R  ++R  +GG
Sbjct:    4 MTELRRSVRVRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKADTGHRLKKSKRLKGRIPPSKRGLRSRHSLGG 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB3_ECTSI1.980e-4768.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBY9_9STRA5.430e-1241.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:391855..398045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size445
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.900.1prot_C-linearis_contig104.900.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 391897..398045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.594656-UTR-C-linearis_contig104:391854..3918961622927387.594656-UTR-C-linearis_contig104:391854..391896Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 391855..391896 +
1690879670.1437058-UTR-C-linearis_contig104:391854..3918961690879670.1437058-UTR-C-linearis_contig104:391854..391896Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 391855..391896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927387.6095226-CDS-C-linearis_contig104:391896..3919241622927387.6095226-CDS-C-linearis_contig104:391896..391924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 391897..391924 +
1690879670.1538796-CDS-C-linearis_contig104:391896..3919241690879670.1538796-CDS-C-linearis_contig104:391896..391924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 391897..391924 +
1622927387.620417-CDS-C-linearis_contig104:396832..3969331622927387.620417-CDS-C-linearis_contig104:396832..396933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 396833..396933 +
1690879670.1678996-CDS-C-linearis_contig104:396832..3969331690879670.1678996-CDS-C-linearis_contig104:396832..396933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 396833..396933 +
1622927387.6318073-CDS-C-linearis_contig104:397583..3977001622927387.6318073-CDS-C-linearis_contig104:397583..397700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 397584..397700 +
1690879670.1769028-CDS-C-linearis_contig104:397583..3977001690879670.1769028-CDS-C-linearis_contig104:397583..397700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 397584..397700 +
1622927387.6425037-CDS-C-linearis_contig104:397889..3980451622927387.6425037-CDS-C-linearis_contig104:397889..398045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 397890..398045 +
1690879670.1850855-CDS-C-linearis_contig104:397889..3980451690879670.1850855-CDS-C-linearis_contig104:397889..398045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 397890..398045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.900.1

>prot_C-linearis_contig104.900.1 ID=prot_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MTELRRSSRVRQSAKHSSSYYEPSDKSASLFATPDVRPRKWQMAEAPVGY
FTVNRWTPKDQQHLTADLHGGLTDPVEIAAAKRALRASSKVSTRFKTRGR
MGGGARLSSARRASVSDNSYGVGAGPGPGQWGSA
back to top

mRNA from alignment at C-linearis_contig104:391855..398045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.900.1 ID=mRNA_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6191bp|location=Sequence derived from alignment at C-linearis_contig104:391855..398045+ (Chordaria linearis ClinC8C monoicous)
TGAGCGCGGAGACAGGGCAGGCTGGCGGCGGCGTGGAGAGGGATGACAGA
GCTCAGGAGATCATCTCGAGGTGGGTATGTGCCGGTGTACGACTTGCTCG
TAGAATGCTTGCCTTGCTTCGTCGCGACCCCTAGAAGCGAAACTCTTGGG
AACCCTACAGTCAGAAAGTCTGCCTATTTAACGCCAAAACGAAGCCTCTT
TTTTTTTCAAAGCCTCATCACTGGTGTGGAAAAGATTGCCAACCCGGTTG
TGAGCAGTCCGCGACCCCAGTCCCCCTTACTGTGCTGGCACGTCCCCACC
GCAACCCTCACCGTTTCCGAAGCCCGTACCCTTTGCGGGCCAATATTAAT
ATTGATATTTGGCAGCTTTTTGTGCCCTTCGACACTTTGAGAGCTTTTAG
CGGAGACGAACAGGCCACAAAGTTTTAGTTTTTCTACCGGCCCATTGTTG
CTCCCCACGCCTCATCACCCCATCGGTTGCGCGCGACTGCCCGTCCCGTA
AATGCGCATGGACGCAGCTAGGACTACAGCTATCCTCGTGAGCGTAGGCA
TGATGAAAGCCGTTAGAATCTGCGACTCGCGCACACAACCCCCTCACGGC
GCCGCCCCCTCGTCGGTTGCATACCACCCCTGCAACAGCACGAGAACCCA
CGTCTTGGCTTTCGCACAGGTATCGGCCCCAGAAATAACGATACAGTATA
ACGGAACGGCGGTGTAGGTGTGCGCAATTTTTCGCCGCATCCAAGTAGAT
TCGCCGGGCATACCGCCGTCTTCAAATCGCTTTATATCTCGCCCCTGCCC
CCACTTTACACGAAGAATGCTCTGCGAAACGTGATTTGTACCTCACTCTG
TATTGAATTGTTAATCCACCACTTAGGTATTTGGTATTTGGGCAATTTTT
TACGGGCGGCGCCGCCGCGCCCGTGGAAAAAAAACAAAAAAAAGAAGAGA
AAAAAGTTTCAAGTCTTGCGGCCGCGTTTTAGGTTTGGGACGGCGGATCC
TACAAATGCGAGAATACACACAATTATCATGTTTTGTGCATATCCTTCGT
GCGCGCCGCCATTTCCTGATATCACCACACCAGAGCGGCTGCAGTTTTAA
CATCACTGTCAGAAGGGGACGTTGAGAAATGCACAGCAGTTTGTCAGACG
TTGGGGTGAAACATAATGTACCACACAGCTTTATGGTGGGTGGTTTCTCC
CCGATATATTTGCCGTTGACCCGGCAGAGTGTTGCAGGGAAGGTCTGTGA
CGCTTTTACAGTTTTAGGTAATTTTGTTCCCCACCTATCCCATATTGTTG
TTGTTGTTGTTGTCTTCACATTAAAAACCATCCCGGTCCCGTCTCTATCC
AGTACCTCCTTCTGTCTCAACCTCTCCGTACTAATCCATCACTTGACGCG
GCCGATTTCCGTGGTCACAAGCTAATTACGTCACTCGGTATTGAAATCTT
AATCCATCTTTTAGAGATCTGTCTCTCTGAGGGGAGGTTCTTTCTTTGAT
GCCGTTTTGATTTATACTAAAAAAATTAGAGGCAGACTTTCCACATGAAA
AGAGGCGTTTGGGCAGAAACGATGTGTCGACGCATTGAGCGCAACACAAG
ACGGCGGTTTGCTCTTGGCGTCGTTGCTCGATTTTCAAACTCTCTTTTGA
AGTATAGAAAGCAGGTATACACTATGGATTGAGTTTTTTGCAGCCGAAGA
AGTGCAAGAATATATGAACGAGAATACAACGCAAAATGTTTCTGGGTACT
GGACCAGTACCTACTGGTAGTCTATTGGCTGGCAGTATACTGGTACTGGT
TTTGGTGCCGCCAGTACTTTAGTGAAGCCAATTTTTTGCTCTAGTGAAGC
CAAATCGCGTAAAAAAGCGCCTCCGCCGGGGCCCCCTCGCCAGCCGGGGG
GGGGCGGTGGCCGCGGCTACGCCGCGTGCCCAAAGTACTGGTAGAGTACT
GGTGTACTGGAGCAGCAGCCAGTACAAAAGGTACTGGTGCGCAGCGGAAT
GTTCGATCTTCCACGTCACGAAGCACCCGAAAAAAGAAAAAAGTACCAGG
TATGACACAGCAGTGTGACGCACCCAGCAGGTGCAACTTGCTGGCACGAC
GGAAAGAGTTTGAGCTTAGCGACATGCCGTCCATACTCCCTGCCGCCGAG
AGATGATTGAAGCGTACTCCGTGTGTACCTCCCCGTGGTCAGCTACCCGT
GGAGGAATGGGGTTGCAAAACAGGAAATGTCTAATACGAGAACCACAAGA
GTCATACTATTTAGTAGGACCAGGGCTTGGTCCGACACGCTACTAAGCAC
ACACGTGTAGCAACAACACTCGCCAAAAAATAGCGACGAAAACAACAATC
GCCAAAGCCTCCGCCATTTTCAACTGTAGTCAACCTCCTCACAACACAGA
AGGAACATTATCAAAAGACGATTGAACACCAGAATCAGCAGAAGCAGCAG
CAGCAGCAGGATCACACGATAGATTCTTTACACTTATTTATACCATAGAC
TAGTTGGGTCACGAATGAAAGATCACCATAGACGCTACCCCACAGCACAG
AAGGAATCCCCGACCATGGCTTTCGAACAGCGCGACCCTACGCCATTCCT
ATTCCTATACCTCTTCGAAGCTACCGGAAATCGCTCCGATTCCCTCCCCG
TAGGTTCTATGCAATTGACCACTCAGTTGCCAAGGCAGCTGCAAAATTAT
CATCAGCGCCCCCTATGATCGACTGACGAAGAGCAAAGAAAGGTATTGAG
AGCCCATCGCTGGAATATGGGCGTTATCGGTTGGCGGCAGCGCGATTTCA
GCCCGATTCAAAAGAACGCCAGCAGCACCATTGCACACCACGTAGACGAA
GCCCAGCACAACAGCAGTCAGTCTTCGGCTTCTTCTTCTTGATGAACCAC
CGTTGATATCCCTGGCATGATACGAAAGTAAATCATTGAACCACAAACTT
AATAAGCAGAACACCTTCACTTGCAGGAGAGGGGGGCTGGGATCCACCAA
GTGGGCTCACCAGGATACAGTAACGATCTGGTTTGAGCACTTGTATTATT
TGGTATCAGATAGCCGGAGTCGCATAAAACAACAAGCGTTTGTACAAAAG
GTGACGTTGACCAATCAATGGTGCATGCTATGCAACTGTAGACGAGACAC
TTCTGTATGTGTGGCTATTAACGAACGAACGTGTGCCCGTATTTATTTCG
CAGGGAAAAAGTGCAAATCCCCCGAAACGTCTGCTGCTGATGCTGCTGTA
ACATGGTTACTCTTGGTTCCGATCACAACGTACATCGACCGCTGCTCCTG
CTGTTGCGGTCACACCGGATGCAAGCAAGATCCGGTTGTTCTCTGATTCT
ACAGAATGATCCACGCACACAGCTGGCAGTCGGCACTGTAAAATGGCTGC
TCGTCTTCCCGAAACTACGTCGACAGGTGCTGTTGTTTCGTTTTGTACAC
ACTGGGCACAAGAAAAGGCGGGGAATACGGTAGATGCAAGTTCATACTCA
AACGTATTCCCGAGAGAAGACGATGAGCAAACACGACACGGCTGCGGTCA
TGACGTGTGTTCGTGAGAGAACGGAAACGTTGCGATAGAGTACACACACC
CAGCAGCTCAACTGGTACAACGGGGAGGGAGAGCCAGTGCCCAACATACT
ACAGTAGTCTATGTACATCGTTCTCGAGCGTTTCTTGGGCCGCGAGGATG
TTCGCACCCCTTTGTTTTAATGGAGCGAATGAGGAGGAAGTGACGGGACT
TTGAACATCGGTCCACGGGTGTGTATACTTGTGTGGTACCACGGCATCTA
CTGGTTTGTCTGGATGTGTGGGCGCAAACTGAGAGAGAAGGGAAGACGGA
GCAACCAGCAGATACAGCAAGTACCGTGAAGCCGATGCAAATTTTCACAG
CAAGTACTCACATGTCGAAGGTTTCATCCCTCGTGTGGTTTGCATGTCCC
ACGGCTAGATGCTTCCACAAAGCTCTGCTGCTGCTCCTCTCGAAGCTCTC
CTTCGACAAGCTGCCCGCTCCCGTGCGCTCTCCTGCGCTCCTCTTGTACA
TGCTCAAGTTTCGACTCGCGCACCCCCTCGATTTTTTGACTGGTCGAGCC
CATGAGTTTGTATGGCCATCCACAACGAGCTGGTAGCGATGCATGTTGCT
CTCTCTCTCTCTCTACCACACACACGCGGTGCACAGCGCATGTGTGGGCG
GTGTGTGCGTGCAAATGCGATGTGGCAGAGAGAACCAAAAAGGAGAACCA
AAAAGTGGCACTAACCGACGGATAGTTTTTTTCTGTTGTATAACCAAGTG
CATAAAAAGTGGCGCTTACCGACGGCGGGGGCTCCACTGCTAAAAAATTG
CCTCTCCCGGGATTTGTCTGTTTGAGGGGAGGTTCTTTCTTTGGTGCCGT
TTTGATTTATAAAAAAAACAGGGGTATGAATCGGATCCGATTCATTGATT
TAATCGGACCGATTTGAATCGACATCAGAATCGGAAAACGAGACCATGGT
TCACCGATGTTTCACCGATGTTTGTGTTTGAGTGTGTAATGCCCGAACGA
AGAGGGTGGCGGTATCCCAGACTAGAGGGGGGGCTCCTTGTATACGTGTG
AGTCCATACGCGTCTCTATTTCCCCCCCCGGTACGATGATGATCGTTAGC
AAGCGAGAACAGGGAACAGCTCATCATCTACACACACGCAACCCCTTTTG
GGTACCTTTCCCATCAAATACATCCTGCGTGGACCTCGTGTGCCCTCAAG
TAGAGTCTAGCCAACAGCGGTTGGGCAGTGAAAGGTGGTTGAAGTGGTTG
AGGTCGGGCCCCCTCACCAGCCGGGGGGGGGCGATGGGGGCTCGCACGGC
GAGCTCACGGCGCCTTCGCGGCGCCGATATATCGATAATCGGCTGCGCCG
AAAACCGATGTTTTAAACATCGTGAAACCCAACCGATTAATACCCCTGAA
AAATCATGATTTGTGCATATGCCTGCAGTTCGTCAGTCGGCCAAGCACTC
CTCTAGCTACTACGAGCCCAGCGACAAGAGCGCCAGCCTCTTCGCCACTC
CGGACGTGCGACCAAGAAAATGGCAGATGGTGAGTGAGCCTCTTTCTATC
GTGGAGGGAACTAGAGGGTACCAAGGGTTTGCATGGAGAAGGAAAAAACG
GCATTTCCTGCCTTGCTTTTGTTCGCGGCGTGCGTGGTACTGGTAACTAT
TCTATTTTGCTCGGCGGACGTATGTATTGTAGCATGTCTGGGCACGCTTT
TGTCTACCGGAAACACGAAACACGCACCTCAATACTGTATACTCCGGAGT
ATATTTTTCTCATTTTTACGGCTGTTGTGCTGTACCGCACCAGTGCTGTG
CTGCCAGCATATTCTAGCTGGAGACCGGCCTCTGCAAATTTGGGCACTTC
TATGCTTGCTTGATGCGCACAGACAGCATTCGAGGATGCACGTATGTATG
TAGCCTAGAATAGTGCTCACTCCTTGGTTGGTTTTCGATAACTTTAACTT
TCCACGCGGATACATCCGTCCGTCATTTCATTTCCAGTACTGATCCGCGC
CAGATCAATATGTCGGCGATCTCCATCAAAATCAAACTTGTCTGCCAGCT
GCCAACACCCACGCCCCGCACCTACCTACACGTGCAAAACGTCTCACCTT
TCCTTCGGCTTTTCATGTCCATGTCTGTGCTCGAATCGGAATTTCCCCCC
GGTCTCTTGTGGCGGTCACTCACGTCTAGGCGGAAGCTCCAGTGGGATAT
TTCACTGTGAACAGATGGACGCCCAAGGACCAGCAGCATCTGACCGCGGA
CCTTCACGGAGGCTTGACCGACCCGGTGGAGATCGCGGCTGCGAAGGTGA
GACAAATAAGGCAGGCAGGAGCCGGGCACAGAATCTTAGACCTTGCGATC
GATCGATCAAGAAAGCCACACACACTCCGCACAAGTTGCTGCACACAAAG
TGGTGAAAGAAACGAAGAGTCTCTCTGCTGCTGTAGACCTCATTCCTGCC
CCCCCCCTCCTCTCTGTCCCTTCCGCGCCTCCCAGCGGGCGCTTCGAGCA
AGCAGCAAGGTCTCCACCAGGTTCAAAACCAGAGGCAGGATGGGCGGCGG
GGCACGGTTGTCGAGTGCAAGACGCGCGTCCGTTAGCGACAACAGCTATG
GCGTGGGAGCAGGGCCGGGGCCGGGGCAGTGGGGCAGTGCT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:391855..398045+

>mRNA_C-linearis_contig104.900.1 ID=mRNA_C-linearis_contig104.900.1|Name=mRNA_C-linearis_contig104.900.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig104:391855..398045+ (Chordaria linearis ClinC8C monoicous)
ATGACAGAGCTCAGGAGATCATCTCGAGATGACAGAGCTCAGGAGATCAT
CTCGAGTTCGTCAGTCGGCCAAGCACTCCTCTAGCTACTACGAGCCCAGC
GACAAGAGCGCCAGCCTCTTCGCCACTCCGGACGTGCGACCAAGAAAATG
GCAGATGTTCGTCAGTCGGCCAAGCACTCCTCTAGCTACTACGAGCCCAG
CGACAAGAGCGCCAGCCTCTTCGCCACTCCGGACGTGCGACCAAGAAAAT
GGCAGATGGCGGAAGCTCCAGTGGGATATTTCACTGTGAACAGATGGACG
CCCAAGGACCAGCAGCATCTGACCGCGGACCTTCACGGAGGCTTGACCGA
CCCGGTGGAGATCGCGGCTGCGAAGGCGGAAGCTCCAGTGGGATATTTCA
CTGTGAACAGATGGACGCCCAAGGACCAGCAGCATCTGACCGCGGACCTT
CACGGAGGCTTGACCGACCCGGTGGAGATCGCGGCTGCGAAGCGGGCGCT
TCGAGCAAGCAGCAAGGTCTCCACCAGGTTCAAAACCAGAGGCAGGATGG
GCGGCGGGGCACGGTTGTCGAGTGCAAGACGCGCGTCCGTTAGCGACAAC
AGCTATGGCGTGGGAGCAGGGCCGGGGCCGGGGCAGTGGGGCAGTGCTCG
GGCGCTTCGAGCAAGCAGCAAGGTCTCCACCAGGTTCAAAACCAGAGGCA
GGATGGGCGGCGGGGCACGGTTGTCGAGTGCAAGACGCGCGTCCGTTAGC
GACAACAGCTATGGCGTGGGAGCAGGGCCGGGGCCGGGGCAGTGGGGCAG
TGCT
back to top