mRNA_C-linearis_contig104.869.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 963 bits (2489), Expect = 0.000e+0 Identity = 648/991 (65.39%), Postives = 716/991 (72.25%), Query Frame = 1
Query: 1 MSSAGSFVHGSSAGGEDDRKKSKEEQDIANFLSSIDDMTSSSLGEVNLHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGMHGDVSELSAIADAFPADWLQGMEGLGM-VGDQSDSSAPPQAEQTQQLPXXXXXXXXXXXXXXXXXXXPRPVAKEHS--NNREPEILGEEPEILDDVEGGYDSGR-----LMSAGGRVASWATRTPASLVGAATAAFRGDARHTAGSPSATTAADAAATATTAGADEPPLDWPGTLDMLGMTQAEAEYGGNPTAAAAAAPASELPSMPPPAAREETFPDFVEIRDPRNVSQFPKPDNALVAKVAAGGRNGGDGQAGEXXXXXXXXXXXXXXXXXXXXQRQVLPAPLRTVEVYLRPDVTWESVADVYMAVMLSRGLVVRQQTEKTVTAEKSADAPGDWSTVKLTVGVTRDKLRTLVIQFYADSR--APMLSFAGTMARFSGRAGDELYTALRDALVERRMPLSFLATDAEGVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERSARLAATLLPQYQANGLEPPRPMRSKPLSAYPLTTRRPPVSSCGVEEAREVMERAREHAYVAGTAGTAGSTLQKRTDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSGSMVVAEGIRSLIRSTWEDVKDWCDEEAEARVRRKDAQVRDRLLAVERHREALVAVLRDGAGGPGASGTPVGRDFAARFRLMAKEAVLCYCKAVHAKRVGQLYLTCNHLCFHSSVLGFTSQRVLPLLTVASVSHAPSVLGMDLVTLVDRGREEHSFGIPAVEAGFPQRFRDLLNQCLVLCKADASRRAAEREGAAATDKKPDEEQILARVQRLAKAKQLREARGAXXXXXXXXXXXXXXXXPPVQPVLSPAAGVSVEKEGAVGPDQM------CGVSGGGEGIVEVGGGGAMGMGGEAAGRRNEGGRVGPXXXXXXXXXXXXA--NPGSMMAMGIQAFLEESQKR 2919
M+SAGSFVHG+ A E+ ++SKEEQDIA+F+SSIDD S ++ + + D AIADAFPADWL EG+G+ V ++DSSA Q + XXXXXXXXXXXXX ++ + NN E+LGEEP+ILD+V+ GY SG LMSAGGR+ SWA TPASLV AAT AFRGDA H + + +A A + ADE PLDW GTLDM+GM +AE + G T+A A AP SELPS+PPPAARE FPDFVEIRDPRNVSQFPKPDNALVAK AAGG GGDGQAG+ X QR VLPAPLRTVEVYLRPDVTWESV+DVYM VMLSRGLVVR QTEK VTAEKSADAPGDW+TVKLTVGVTRDKLRTLVIQFYAD+R AP+LS AGT+ARFSGR GD+LYTA+R+ LVER+MPLSFLATDAE VSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEER ARL ATLLPQY+A GL PPRP RSKPLSAYPLTTRRPPVS+CGVEEAREVMERAREH V G G + + XXXXXXXXXX GSGS VAEGIRSLIR+TWEDVK+WCDEEAEARVRRKDAQVRDRLLAVE HREAL+A LRDGAGG AS TP GR+FAARFR MAKEAVLC CKAVHAKRVGQLYLTCNH+CFHSSVLGFTSQRVLPLLTVA++SHA SVLGMDL+TLVDRG +EHSFGI AVEAGFP+RF DLL QCLVLCKADASRRAA+REGAAA++++PDEEQILARVQRLAKAKQLR XXXXXXXXXXXXXXXX ++P A + G P++ G S GG G+VE G GGAM XXXXXXXXXXXX GSMMAMGIQAFLEESQKR
Sbjct: 1 MASAGSFVHGTGAS-EERVRQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGK---AIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGSAAAASTDADELPLDWQGTLDMVGMAEAETDTKG--TSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGG--GGDGQAGQGAXESGEHAAAAGQERG---QRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREH--VRG----GGDSFPPQKGVDVDDENVFASGGXXXXXXXXXXDEGRGAKVGSGSS---VAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLLTLVDRGGQEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLRXXXXXXXXXXXXXXXXXXXXXXXXD--MAPPAASPHSRPGYPRPEESEFAERDTGASVGG-GVVEGGAGGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKR 968
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Match: A0A7S2F8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8A2_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 6.390e-5 Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 1942 LIRSTWEDVKDWCDEEAEARVRRKDAQVRDRLLAVERHREALVAVLRDGAGGPGASGTPVGRDFAARFRLMAKEAVLCYCKAVHAK-----RVGQLYLTCNHLCFHS--SVLGFTSQRVLPLLTVASVSHA 2313
++R+ W + C+EEA AR+ RK V RL A+E +R A+V+ L + + V R F RFR+ A EA+L C AV + R G++Y+T HL F +L +Q +P T+ + A
Sbjct: 69 VVRALWRLLGSKCEEEARARMARKQKVVTQRLQAIEGYRSAVVSKLANRSQQNRTELIGVERAFRGRFRV-ADEALLVDCAAVVTEADGKQRKGRVYVTMGHLWFDDPGGLLTSPTQTPIPFYTIHEIGKA 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.869.1 >prot_C-linearis_contig104.869.1 ID=prot_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=974bp MSSAGSFVHGSSAGGEDDRKKSKEEQDIANFLSSIDDMTSSSLGEVNLHGback to top mRNA from alignment at C-linearis_contig104:79265..84496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.869.1 ID=mRNA_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5232bp|location=Sequence derived from alignment at C-linearis_contig104:79265..84496- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:79265..84496- >mRNA_C-linearis_contig104.869.1 ID=mRNA_C-linearis_contig104.869.1|Name=mRNA_C-linearis_contig104.869.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5844bp|location=Sequence derived from alignment at C-linearis_contig104:79265..84496- (Chordaria linearis ClinC8C monoicous)back to top |