mRNA_C-linearis_contig104.868.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.868.1
Unique NamemRNA_C-linearis_contig104.868.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6H5JAJ0_9PHAE (OHCU_decarbox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAJ0_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 5.030e-93
Identity = 145/171 (84.80%), Postives = 160/171 (93.57%), Query Frame = 3 
Query:   39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEIAPP 551
            M+AL+ +PR  LR+ELLRCCH + WADAVLGRMPFKSE+EA+AA+DDCWAKL+PADYLEAVAAHPAIGDKQALRDKFAPSRSGWED EQAAAAGASEAV +ELS+LN EYR+KNGFVFLVCASG+PADAILALLKARLPNDRDTEI+NAVEEQR ITQLRF RLL EI+PP
Sbjct:    1 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEAQAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEEYRQKNGFVFLVCASGMPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLMEISPP 171
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A2W4HVW3_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4HVW3_9BACT)

HSP 1 Score: 137 bits (345), Expect = 6.560e-34
Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = 3 
Query:   39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
            ++ L         E+L RCC    W + +L R PF+S  E  +A DD W KL P D+LEA A HP IG D +ALR KFA S + W ++EQ   + A+E V   LSKLN EY +K G++F+VCA+G  A  +L +LK+RL ND+D E+K A  EQ  IT++R  +L+
Sbjct:    9 LETLNAKSASEAAEDLERCCGSRVWVEKMLSRRPFQSVDELFSAADDIWFKLAPEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQKGVSQATEDVLHALSKLNDEYFEKYGYIFIVCATGKSARQMLDILKSRLLNDKDNELKVAAGEQAKITKIRLEKLI 173
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: UPI00199ADACE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199ADACE)

HSP 1 Score: 135 bits (341), Expect = 2.020e-33
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 3 
Query:   39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLE 536
            ++AL  +  P  RE L RCC  S W D +L   PF ++     A D  WA    +D+LEA   +P IGD+ + R KFA S + W   EQ+ A+ A+EAV   LS  N  Y  K GF+F+VCA+G  AD +LALL+ARLPNDR TE++ A  EQ  IT LR  + L+
Sbjct:    4 VEALTGLTEPAWREMLTRCCGASHWVDGMLVLRPFSTDTALMKAADQVWAGTGESDWLEAFTHYPKIGDRDSRRQKFA-STAEWASHEQSGASAANEAVLTALSDGNLNYEAKFGFIFIVCATGKSADEMLALLQARLPNDRATELQIAAGEQHKITLLRLEKWLQ 168
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6L3EM52_9PROT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L3EM52_9PROT)

HSP 1 Score: 135 bits (340), Expect = 2.610e-33
Identity = 71/165 (43.03%), Postives = 98/165 (59.39%), Query Frame = 3 
Query:   39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
            +D+  R+P  ++R  L  CC  + W D +L R PF+   +   A  D W +++  D+LEA AAHP IGD  +LR+K+A +R      EQAA  GA      E+ +LN EY  + GF+F+V ASG  A  +L LLKAR+ N RD E++NA  EQ  IT LR  RL+
Sbjct:    3 VDSFNRLPEHQVRARLTDCCAAARWVDLMLARRPFRDAGDVARAARDAWMQMSTRDWLEAFAAHPRIGDIDSLREKYASTRE-MAGGEQAAVGGADVDTLREIGRLNREYENRFGFIFIVFASGKSAVEMLELLKARIDNTRDQELRNAAAEQLKITLLRLDRLV 166
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A836Q8N7_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q8N7_9BACT)

HSP 1 Score: 134 bits (338), Expect = 6.060e-33
Identity = 71/153 (46.41%), Postives = 100/153 (65.36%), Query Frame = 3 
Query:   78 EELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
            E+L RCC    W + +L R PF S  E  +A DD W KL   D+LEA A HP IG D +ALR KFA S + W ++EQ   + A+E V  +L+KLN +Y +K G++F+VCA+G  A+ +L +LK RLPND++ E+K A  EQ  IT++R  +L+
Sbjct:   22 EDLERCCGSHAWVEKMLTRRPFHSVDELFSAADDIWFKLAAEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQRGVSQATEDVLHQLAKLNDDYFEKYGYIFIVCATGKSAEEMLEILKGRLPNDKEKELKVAAGEQAKITKIRLEKLI 173
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A6L7U330_9CHLR (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=2 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6L7U330_9CHLR)

HSP 1 Score: 133 bits (334), Expect = 2.220e-32
Identity = 73/170 (42.94%), Postives = 102/170 (60.00%), Query Frame = 3 
Query:   36 AMDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEIA 545
            A  AL R+P  R  E L RCC    W  +++ R+PF   +  R+  D+ W  L   D+LEA A HP IGD  +LR +FA +R+ W + EQ+   GASE V   L+  N  Y ++ G++F+VCA+G  A+A+L LL+ RL N  D E+  A E+QR I QLR  +L EE+A
Sbjct:    5 ATVALNRLPAARQAELLERCCGSERWVQSMVQRIPFADWQALRSEADEIWLGLDRDDWLEAFAHHPRIGDIDSLRARFATTRN-WSEGEQSGVDGASEEVLAGLAAGNRRYEQRFGYIFIVCATGKSAEAMLELLQERLGNSPDDELPIAAEQQRQIMQLRLDKLREELA 173
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A848LKZ2_9DELT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=3 Tax=Pyxidicoccus TaxID=224458 RepID=A0A848LKZ2_9DELT)

HSP 1 Score: 132 bits (331), Expect = 4.810e-32
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 3 
Query:   39 MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLL 533
            ++ L +M     R ELLRCC  S WAD ++   PF+  +   A     W +  P D+ EA+  HP IGD   LR KFA S + W   EQ    GA EAV + L+  N EY ++ GF+FLVCA+G  A  +LALL+ RL N  D E++ A EEQ  IT++R  +LL
Sbjct:    4 LERLNKMMSSEARAELLRCCGSSRWADGMVRSRPFRDAEHLLAEAAWLWKQTGPEDWREAITHHPRIGDVSQLRAKFA-STATWSSQEQGGVVGADEAVLQGLADGNAEYERRFGFIFLVCATGKSAAEMLALLRERLDNSPDEELRIAAEEQAKITRIRLEKLL 167
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A4Q5NTB6_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5NTB6_9BACT)

HSP 1 Score: 132 bits (331), Expect = 5.260e-32
Identity = 69/153 (45.10%), Postives = 99/153 (64.71%), Query Frame = 3 
Query:   78 EELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLE 536
            +ELLRCC  S+W   V+   PF + +      ++   KL   D+LEA A HP IGD  +LR KFA + S W  +EQA    ASEA  + L++ N +Y  K GF+F++CA+G  AD +LA+L+ RL ND++TE++NA E+Q+ IT+LR  +LLE
Sbjct:   20 DELLRCCGASKWVLIVMNGRPFANVETLYTRSEEALNKLDHTDWLEAFAHHPKIGDIDSLRSKFATT-STWAGNEQAGTNAASEATLQALAQGNTDYEDKFGFIFIICATGKSADEMLAVLQTRLNNDKETELQNAAEQQKQITRLRLGKLLE 171
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: UPI00098774F1 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Pseudocolwellia agarivorans TaxID=1911682 RepID=UPI00098774F1)

HSP 1 Score: 132 bits (331), Expect = 6.440e-32
Identity = 68/169 (40.24%), Postives = 103/169 (60.95%), Query Frame = 3 
Query:   36 AMDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRLLEEI 542
            A+D L  +P        ++CC  S+W + +L  +P   + +     ++ W  LT  DYLEA   HP IGD  +LR K+A +++     EQ+A   A+E V  +L+K N +Y +K GF+F+VCA+G  A+ +L LL+ RLPN+R TE+ NAVEEQR I Q+R  ++LE +
Sbjct:    6 AIDTLNALPENDALHVFMQCCTSSKWVERMLNSLPVADKAQLVNLANEHWKNLTEKDYLEAFEGHPKIGDVNSLRAKYANTKA-LASGEQSAVDNANETVLTQLAKGNDDYLQKFGFIFIVCATGKSAEEMLTLLQQRLPNNRQTELVNAVEEQRKIFQIRIDKMLEHL 173
[Close]
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Match: A0A7S3XGY5_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XGY5_OXYMA)

HSP 1 Score: 129 bits (325), Expect = 2.320e-31
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 3 
Query:   75 REELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVFEELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAVEEQRDITQLRFTRL 530
            R++ L  CH S+WA  ++ R PF+ +        + W  L   D+LEA   HP IGD ++LR K+  +       EQ+  +GASE V + L+K N +Y +KNGF+F+VCASG  A  +L +L++RLPN RD E++NA  EQ  IT LR  +L
Sbjct:    1 RDKFLETCHSSKWAAGMVARRPFEDDAALLKGAQEVWDSLGEEDWLEAFRGHPKIGDAESLRKKYHGNSGALSSVEQSGVSGASEEVIQALAKGNQDYEEKNGFIFIVCASGKSASEMLEILQSRLPNGRDQELQNAAAEQAKITALRLQKL 152
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAJ0_9PHAE5.030e-9384.80OHCU_decarbox domain-containing protein n=2 Tax=Ec... [more]
A0A2W4HVW3_9BACT6.560e-3445.182-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI00199ADACE2.020e-3345.182-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A6L3EM52_9PROT2.610e-3343.032-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A836Q8N7_9BACT6.060e-3346.412-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A6L7U330_9CHLR2.220e-3242.942-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A848LKZ2_9DELT4.810e-3243.032-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A4Q5NTB6_9BACT5.260e-3245.102-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI00098774F16.440e-3240.242-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A7S3XGY5_OXYMA2.320e-3142.11Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:73491..78385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue5.8e-77
Seed eggNOG ortholog2880.D7FIQ6
KEGG rclassRC01551,RC03393
KEGG koko:K07127,ko:K13484
KEGG TC9.B.35.1.2,9.B.35.1.3,9.B.35.2
KEGG ReactionR06601,R06604
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000255,GO:0001558,GO:0001560,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009605,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009898,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016043,GO:0016787,GO:0016810,GO:0016812,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0018130,GO:0019428,GO:0019897,GO:0019898,GO:0022607,GO:0023052,GO:0031234,GO:0031668,GO:0032870,GO:0033971,GO:0033993,GO:0034641,GO:0040008,GO:0042221,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046483,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0051997,GO:0055086,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0098552,GO:0098562,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.thyroid hormone binding
EggNOG OGsCOG2351@1,KOG3006@2759
EC3.5.2.17,4.1.1.97
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons6
Model size1981
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.868.1prot_C-linearis_contig104.868.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 73529..77048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.3539417-UTR-C-linearis_contig104:73490..735281622927382.3539417-UTR-C-linearis_contig104:73490..73528Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 73491..73528 +
1690879667.2803388-UTR-C-linearis_contig104:73490..735281690879667.2803388-UTR-C-linearis_contig104:73490..73528Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 73491..73528 +
1622927382.4654913-UTR-C-linearis_contig104:77048..783851622927382.4654913-UTR-C-linearis_contig104:77048..78385Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 77049..78385 +
1690879667.357946-UTR-C-linearis_contig104:77048..783851690879667.357946-UTR-C-linearis_contig104:77048..78385Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 77049..78385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927382.3944638-CDS-C-linearis_contig104:73528..735811622927382.3944638-CDS-C-linearis_contig104:73528..73581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 73529..73581 +
1690879667.2917762-CDS-C-linearis_contig104:73528..735811690879667.2917762-CDS-C-linearis_contig104:73528..73581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 73529..73581 +
1622927382.4063034-CDS-C-linearis_contig104:74727..748401622927382.4063034-CDS-C-linearis_contig104:74727..74840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 74728..74840 +
1690879667.3012984-CDS-C-linearis_contig104:74727..748401690879667.3012984-CDS-C-linearis_contig104:74727..74840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 74728..74840 +
1622927382.4218209-CDS-C-linearis_contig104:75295..754201622927382.4218209-CDS-C-linearis_contig104:75295..75420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 75296..75420 +
1690879667.3127568-CDS-C-linearis_contig104:75295..754201690879667.3127568-CDS-C-linearis_contig104:75295..75420Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 75296..75420 +
1622927382.4341109-CDS-C-linearis_contig104:75706..758501622927382.4341109-CDS-C-linearis_contig104:75706..75850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 75707..75850 +
1690879667.3236752-CDS-C-linearis_contig104:75706..758501690879667.3236752-CDS-C-linearis_contig104:75706..75850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 75707..75850 +
1622927382.444741-CDS-C-linearis_contig104:76271..763861622927382.444741-CDS-C-linearis_contig104:76271..76386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 76272..76386 +
1690879667.3335736-CDS-C-linearis_contig104:76271..763861690879667.3335736-CDS-C-linearis_contig104:76271..76386Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 76272..76386 +
1622927382.4569035-CDS-C-linearis_contig104:76992..770481622927382.4569035-CDS-C-linearis_contig104:76992..77048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 76993..77048 +
1690879667.3453898-CDS-C-linearis_contig104:76992..770481690879667.3453898-CDS-C-linearis_contig104:76992..77048Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 76993..77048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.868.1

>prot_C-linearis_contig104.868.1 ID=prot_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=202bp
MDALRRMPRPRLREELLRCCHCSEWADAVLGRMPFKSEKEARAALDDCWA
KLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDDEQAAAAGASEAVF
EELSKLNGEYRKKNGFVFLVCASGLPADAILALLKARLPNDRDTEIKNAV
EEQRDITQLRFTRLLEEIAPPTAAARSGGGGGKDKVLTVSSPTTAMVVRD
K*
back to top

mRNA from alignment at C-linearis_contig104:73491..78385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.868.1 ID=mRNA_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4895bp|location=Sequence derived from alignment at C-linearis_contig104:73491..78385+ (Chordaria linearis ClinC8C monoicous)
CCCCACTCTCTCCACTCCTCCCCCACTGCGCGTAAGCCATGGACGCTTTG
CGGAGGATGCCACGTCCCAGATTGAGGGAAGAGCTCCTCAGGTAACCCAA
GTTGCTTTGTTGTCGGTGTGTCCATTGCAAGCGTGCTAGATGTTGTTGTT
GTTGTTGTTGTCTTCACATTAAAAACCATCCCGGTCCCGTCTCTATCCAG
TACCTCCTTCTGTCTCAACTTCTCCGTACTAATCCATCACTTGACGCGGC
CAATTTCCGTGGTCACAAGCTAACCTACCTAAAAAGGTATACTGAAAAAT
AAAACGGACCGCAAGGGTCAACAGAGCGATAAAATACGAGAAAAATAAAA
GAATCAGGAAACAATTAGTCTGGAGCCCTCCGCTCCCCTCTACACGCTGT
GTGAGGCAAAAATAAAAATAAAACAATAGTGGAGCGCCAGCATCACCAAC
CAGGGGTGTAACCTCCCGATTCTATCTTGCTACCCCTACGAAGCCGGGGT
GTTCCGTCCCAGTTCCCCCGGCAAGGCAGATACATAGTCGGATCCCTCTC
CACCGACAAAGGTGCATATATATACCGGTATGTTTTAAGGGAAGCAGACA
AGGAGACATGTCGACAAAATAAAACATCCAACACGCAGAGGGACAGTCAC
ACCCGGAAAGATATAATCTAAACACGACATCATTCCCCGGGGGGGTAGTG
TAATGGTGCAGCGAAAAAGTGCCATCCCTCATTTTTTCGCTTTTGCTTTG
GTTTTGGGTCTCCACATGCATCCGACAAAGCATGATGACATCGGGACTCA
CGCACTTCTTCAAACTTGTGTATGTGCTGAGTTCCACACGGGCAGGTTTG
ATGTAGTACATCATTGCCCTCTTTTGGAACCAGCATGTGGGTTTTGGTCA
CATATTTGCGATTTTTGACGACCTGTAGATACTAAACATGCATCCCCTGG
ATGGGTGTCCTCCTGGTGCCTACACAGCGTCTACCGCGTGGGTGGTGCAT
TGGGAAGGCTTTCGTTGGACTGCTGTGTTGTGAAAACAATCGATGGCCGG
TAGATGGAGAGACGCGAAATGAATAACTCCAGTGTTGACTACTGTGCTGT
TTCGGTACTGTATTGCAGACACATCGTGAGTGCGCCCAAAATGCGGCGAT
GGCCGAGGAGCGTGAAGAACAGAACATGAGCTTCTTGTGTGGCACCCCCT
TACAATAGTCTATGGCTGTACCAAACCTAACCCTCAGGTGTTGCCACTGC
AGTGAATGGGCGGACGCGGTGTTGGGCCGGATGCCTTTCAAGTCCGAGAA
GGAAGCTCGAGCGGCGCTGGACGACTGCTGGGCCAAGCTCACACCCGCCG
GTACGTAGCTACAATACCGGCCGTGTCCCGGGAATTACATTCCGGGTATC
GCTCCCACGGCGTAGGTTAGATTAACCCCACCCTGATGTTTGTGATGAAC
GGCATGGTGTCTATGTGAGCAAATGAACGTCGAAGCTCACGAGCTGTGCA
GCATTGGTAGACGTTTTCCCCGTCAGCTGGCCTAGATCCTTGGCAGCCAA
GTCTAGAGGGGGCGGGGTGGGATGACTTGCCTGGCGAATGACTGAGCGAC
TCCTGAGAGGTTCAACAAGCGCAAACCGTTCGCGGTTCTCTAGATATATT
TTAGATGGCAGTTTTCCCTTGAAGCTCACGCCATCAGTTGCAACCCACTA
GGTGTTTCGCTCTTCCCTCTTACCTGTTGCCTCCTGCCTTGACTCACTTG
CGTTGAAAACCATCGCAACAATCGTGCGAATCGAAACCCCGTTGCGTGTC
TACAGACTACCTTGAGGCCGTTGCAGCACATCCGGCGATCGGCGACAAGC
AGGCGTTACGAGATAAGTTCGCCCCTTCGAGGTCGGGTTGGGAAGACGAC
GAACAGGCGGCGGCGGCAGGGGCGAGCGAGGTCAGTGACAGACGACGATG
CGCAGCCGCCAGAGTGCCGCTTTTTTCCCATGTTTTTCAGGGATAGGTGG
GAAGCCCAACCGCGGCAACGGGGGTGTCATTTCTGCAAGCTGTGCCTTTT
TTTTTTCTGCACCGGGATGCTGTTTGTCTTGGTGCTCGTTTTCGGAGGGC
TTGGTTGCCAGCAATGGCCTACTAGACACGCGGGAAAATAAAGAATAAAA
ATATGTTTTCCCCCCCGCCGTGCTCCGATTTATTTTTGCGGAACCCCCAC
GGTTTTTGGGCTTCAGGCTGTGTTCGAAGAGCTGTCCAAGCTGAACGGAG
AATACAGAAAGAAGAACGGTTTCGTTTTCCTCGTTTGCGCCTCGGGTCTA
CCCGCCGACGCGATACTAGCCTTGCTCAAGGCGCGCTTGCCCAATGACAG
AGATACTGAGGTGAGGTTTAGGTTTGAGTCGGGTGGATCGTTCGGGCGGC
TACCTTGTTTTCGCCGTTCCGGCTGGAGGCTGGTTTGCAGAGGCCGCGAT
TTTTTCGGATGGCGCGGGCGGTGGTGGGCAGGGCAGGAAAGGAGTTGGTT
CGCATGAAGCAGGGGGGGTAGGGGGGGCTAAGGATGTAGGGGCATCTTGG
AGCTTGCAGTGGTTTTCGGCGTTGATTGCGGTCGTGCCGCGCTTTGCTGG
CTGCTGCTGTTACTCTGCGCCAGCCGGCGCTTTTTCTCGAGTATCCCTAA
CGCTGGGTGCGGTTGTTGTTGTTGTCGTCGTTTACGACATACAAATGTTG
CCATGCACGAGAGCAGTCGTTTCATCCCTCGACTCGTGTCGTTTGGCGCT
TGCGCTTTTTGTGCGTTGCGTTTCGCAACAGATCAAGAACGCAGTGGAGG
AGCAACGGGACATCACTCAGCTTCGATTCACGCGGCTCCTGGAGGAAATT
GCGCCACCCACTGCTGCCGCGAGAAGTGGCGGCGGCGGCGGTAAGGGTAC
GAAGCAGCGGTCTCTCCTTTCGCGTATGTAGTTTCCTGGCTCCTCTTTTG
TGTCGGCCAACGACAAATGTATACTTGAAGCGACTGCTGTTGTCCTCTCT
CTCGATCCCGTTGCGAAAATTACCCGGGTTGGGTGACGAATTCACCCATT
TTTGTTCACAAAATACCTGACATACACAGATATTTTGGGGTTGTTAAGTT
GTCGTGCGCGTGTTTCGGCGCGTTCGAGCGCCCAGTCAGTTTTTTGTATT
TGTTAGCTTGTCGAGAAACTCATTTGGGCTTTTCGCAAGCGTGATGCAGT
GTTTTGTGATTCATCGGCTTTACCGCGCGGTTTGGGTTTGGGATTGTTAC
AAAGTTTTTTTGTTTACTGTTTGGGGCTTTTCAACGAGGCGATCGCTCCG
CCGTGGGTAGAATGTTGGGACGATAGTGCGGCGTCAAAGACCGCCGCACC
TGTAACGACTTTTAACGTAAATAGTCAGGCTTTTGTTTGGGAGCGTTCCA
CGGCGGGTCGAGTCTTCGTTGCAGTTTTTAGCTCATGAATCTGCCATATG
CACATTGGAGACGACCACCGCACCGTACCGCACCGCCGCTGTCTCGTCGC
AGATAAGGTGTTGACAGTGTCGTCACCAACGACGGCCATGGTTGTTCGAG
ATAAATAGAGTGCCGCCGGGGCTGCTCATGTTGGGCGGGTGGTGGTCTGG
TTCAATTTTTCATCTCCAGCGGAAGGCTCGAGAGAGAGAGAGGGAGAGGG
AGAGCTTTACCGTTTGCCGGCGGCAATTATTGTTTTGTGGGCTTGTTTGT
GTGTTTTTGTGTGCGTTCGTGTTTGTGTACTGGCGACGGCTACGCCAATA
TACTTCGTGTAGTTTCATGGTATACGGGTTGGTTACCACGTGTCCGAGAG
TTGATGAGGCGGCCTCTTGGAAGTGGCCCTGTCGAGGCGCCGTTTTATGC
CTTTTCCTCGTCTTTCGCTGGACGTTTTTGGTCGTCGAATTGTTTCTTTG
GTCTCGTGTTTCCCACAAGGATGAAGCAGCCAATCGCTCACTGCTGTTTG
TTTCCATGTGAGGACAGGGGCTACCGTGAGGACAGCGGCCCTGGTCGTAG
TTGGCGGCTTTTCACCCGCTACCAGGCGGAGTCGGTCGTCTTGGTGAGGT
TGGCAAGGGGGAAGGTCGAAGGTCGAAAACACGGCGTGCTGGGGAGGGGC
GCTTATCAGCAAGTTACGTGTGAGGTGGTGTTCTGCTCGTTTCTGGTTGT
CTTGGTGGCCAAAACGACCAAGGCGGCCAGAGAAAAGTGACAGCCTCTTC
ACACGCAGCTTGACGAGAGGAAAAGCACGGCTCGGCAAGACACTCCCGAC
AAAGCACCGCGTACTGGAGTGCTTTGGGTTGCGGTTCTTTGGTGCTTTTT
TCTGCGCGTGTGTGATGTCGATCCTAGCCGTTGTGCCCCCGCTGTTTCGT
CTGGTAGAGGGGAATAGTTTGGTGCGTGGCCATATGAAGCATGTTAGCAC
CGCGTATTGCACCAGCATGAATTAGCAAGTTCCAGAGAGATTTTGAAGTT
TTGGAACTCCAAAATTTTGATGGACGGTGTTGGCTTTCCGATAATGTACA
ACGTACGTCGCCTGGCCTTTCGACACCTCAAGTGAAGGGTTTGACCTGGA
ACAAGGCCAGCTTTTGCAAACGCAGGAAAGATTTCGCGGGAGCTACCCTT
GCTTCTCGATGAACCCCTTCGCTTGAGATGTGTAGAAAATGGCTAGGCAG
CTAACGGGTGTTTGGTTTGGACAACGCCGCAACATCGCCTCAACATCGCC
TGTTGAAAAAGACGTGCGCTGCCTACGCGCGGACACTTTTCCATCAATTT
CAGGAGTTCCTTGCTAGGGGTCTTCTGGTCTTCTTGATGGTGCATACTTC
GAAGTATAATTTACGGGAAAACGGGCGGCGTTCTCGATCGATGACGAAAT
CGAATCGACGAAAAGTTGTGACAGGGCCGTTGAGTTGTGTGGTGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:73491..78385+

>mRNA_C-linearis_contig104.868.1 ID=mRNA_C-linearis_contig104.868.1|Name=mRNA_C-linearis_contig104.868.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at C-linearis_contig104:73491..78385+ (Chordaria linearis ClinC8C monoicous)
ATGGACGCTTTGCGGAGGATGCCACGTCCCAGATTGAGGGAAGAGCTCCT
CAGATGGACGCTTTGCGGAGGATGCCACGTCCCAGATTGAGGGAAGAGCT
CCTCAGGTGTTGCCACTGCAGTGAATGGGCGGACGCGGTGTTGGGCCGGA
TGCCTTTCAAGTCCGAGAAGGAAGCTCGAGCGGCGCTGGACGACTGCTGG
GCCAAGCTCACACCCGCCGGTGTTGCCACTGCAGTGAATGGGCGGACGCG
GTGTTGGGCCGGATGCCTTTCAAGTCCGAGAAGGAAGCTCGAGCGGCGCT
GGACGACTGCTGGGCCAAGCTCACACCCGCCGACTACCTTGAGGCCGTTG
CAGCACATCCGGCGATCGGCGACAAGCAGGCGTTACGAGATAAGTTCGCC
CCTTCGAGGTCGGGTTGGGAAGACGACGAACAGGCGGCGGCGGCAGGGGC
GAGCGAGACTACCTTGAGGCCGTTGCAGCACATCCGGCGATCGGCGACAA
GCAGGCGTTACGAGATAAGTTCGCCCCTTCGAGGTCGGGTTGGGAAGACG
ACGAACAGGCGGCGGCGGCAGGGGCGAGCGAGGCTGTGTTCGAAGAGCTG
TCCAAGCTGAACGGAGAATACAGAAAGAAGAACGGTTTCGTTTTCCTCGT
TTGCGCCTCGGGTCTACCCGCCGACGCGATACTAGCCTTGCTCAAGGCGC
GCTTGCCCAATGACAGAGATACTGAGGCTGTGTTCGAAGAGCTGTCCAAG
CTGAACGGAGAATACAGAAAGAAGAACGGTTTCGTTTTCCTCGTTTGCGC
CTCGGGTCTACCCGCCGACGCGATACTAGCCTTGCTCAAGGCGCGCTTGC
CCAATGACAGAGATACTGAGATCAAGAACGCAGTGGAGGAGCAACGGGAC
ATCACTCAGCTTCGATTCACGCGGCTCCTGGAGGAAATTGCGCCACCCAC
TGCTGCCGCGAGAAGTGGCGGCGGCGGCGGTAAGGATCAAGAACGCAGTG
GAGGAGCAACGGGACATCACTCAGCTTCGATTCACGCGGCTCCTGGAGGA
AATTGCGCCACCCACTGCTGCCGCGAGAAGTGGCGGCGGCGGCGGTAAGG
ATAAGGTGTTGACAGTGTCGTCACCAACGACGGCCATGGTTGTTCGAGAT
AAATAGATAAGGTGTTGACAGTGTCGTCACCAACGACGGCCATGGTTGTT
CGAGATAAATAG
back to top