mRNA_C-linearis_contig104.905.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.905.1
Unique NamemRNA_C-linearis_contig104.905.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:427151..427803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000040.1
Exons2
Model size226
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927381.2951047-CDS-C-linearis_contig104:427152..4273321622927381.2951047-CDS-C-linearis_contig104:427152..427332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 427153..427332 -
1690879666.817624-CDS-C-linearis_contig104:427152..4273321690879666.817624-CDS-C-linearis_contig104:427152..427332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 427153..427332 -
1622927381.3060584-CDS-C-linearis_contig104:427761..4278031622927381.3060584-CDS-C-linearis_contig104:427761..427803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 427762..427803 -
1690879666.8273442-CDS-C-linearis_contig104:427761..4278031690879666.8273442-CDS-C-linearis_contig104:427761..427803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 427762..427803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.905.1prot_C-linearis_contig104.905.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 427153..427803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.905.1

>prot_C-linearis_contig104.905.1 ID=prot_C-linearis_contig104.905.1|Name=mRNA_C-linearis_contig104.905.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
ITGRRAIDNAGDPLYFGGDDRVWREPAPNQAQADTNPTPRASAPGSPLSA
GAEYRGDTFNSSLGLKESWSLQAV
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mRNA from alignment at C-linearis_contig104:427151..427803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.905.1 ID=mRNA_C-linearis_contig104.905.1|Name=mRNA_C-linearis_contig104.905.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at C-linearis_contig104:427151..427803- (Chordaria linearis ClinC8C monoicous)
ATAACGGGTCGCCGTGCCATCGATAATGCCGGAGACCCACTGGTGATCCA
GTAGCACACGTCTAGTTGATCGGTAGTTTTGATTTTCAATGGCGGAATTA
ACACAGTAGTTGTATGGCCATGCAGTCTGGCTGTTAAATGTGTCGTGCTG
GCTTCTAGTGGTGTTAATACTTAAGACGTGGTATCTACGTCCGGTGTGTA
TGTGGATACCTGTGTGCGTTCACAATGGATACAGCAGACGTTGGCCCGTT
CGCCCTCTTTCTTCTCTCTCGTCCTTCTATACCTCGGTCTGTCTGTCTGT
CTGTTTGTATTCGTGTCCTAGTTCCTCAGTAGGTTCCATCTCCACGCTGT
TCTTAAGATGAATGTGTCGTTTCCGCTCTCATGTGCTCCGTATACTCAAT
TCAATTTTTCAGCTCATTGCTCATCGCCTTAATTTCCCGTGCTTCTCCGG
CTTGATCCGCCACGCTGACAGTACTTTGGCGGTGACGATCGAGTGTGGAG
GGAACCAGCCCCCAATCAAGCCCAGGCGGACACCAATCCGACCCCAAGAG
CGTCGGCACCAGGATCTCCCCTCTCAGCGGGCGCAGAATACCGAGGCGAT
ACCTTCAACAGCAGCCTCGGGCTGAAGGAATCGTGGTCCCTCCAGGCCGT
TAA
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Coding sequence (CDS) from alignment at C-linearis_contig104:427151..427803-

>mRNA_C-linearis_contig104.905.1 ID=mRNA_C-linearis_contig104.905.1|Name=mRNA_C-linearis_contig104.905.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig104:427151..427803- (Chordaria linearis ClinC8C monoicous)
ATAACGGGTCGCCGTGCCATCGATAATGCCGGAGACCCACTGATAACGGG
TCGCCGTGCCATCGATAATGCCGGAGACCCACTGTACTTTGGCGGTGACG
ATCGAGTGTGGAGGGAACCAGCCCCCAATCAAGCCCAGGCGGACACCAAT
CCGACCCCAAGAGCGTCGGCACCAGGATCTCCCCTCTCAGCGGGCGCAGA
ATACCGAGGCGATACCTTCAACAGCAGCCTCGGGCTGAAGGAATCGTGGT
CCCTCCAGGCCGTTTACTTTGGCGGTGACGATCGAGTGTGGAGGGAACCA
GCCCCCAATCAAGCCCAGGCGGACACCAATCCGACCCCAAGAGCGTCGGC
ACCAGGATCTCCCCTCTCAGCGGGCGCAGAATACCGAGGCGATACCTTCA
ACAGCAGCCTCGGGCTGAAGGAATCGTGGTCCCTCCAGGCCGTT
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