mRNA_C-linearis_contig103.831.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig103.831.1
Unique NamemRNA_C-linearis_contig103.831.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig103.831.1 vs. uniprot
Match: A0A6H5K479_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K479_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.400e-6
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:  255 ISRHPVGLFSLAFFPRRFFPPPSRPV 332
            +SRH VGLFSLAFFPRRF PPPSRPV
Sbjct:    1 MSRHAVGLFSLAFFPRRFLPPPSRPV 26
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K479_9PHAE1.400e-688.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:228762..229096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927374.5144005-CDS-C-linearis_contig103:228761..2290941622927374.5144005-CDS-C-linearis_contig103:228761..229094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 228762..229094 +
1690879662.2022429-CDS-C-linearis_contig103:228761..2290941690879662.2022429-CDS-C-linearis_contig103:228761..229094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig103 228762..229094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.831.1prot_C-linearis_contig103.831.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig103 228762..229094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig103.831.1

>prot_C-linearis_contig103.831.1 ID=prot_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
VRSTQYKQLIQTACAWRHTDFAWVIAQFPTAAASKPSKLGVAGSQAAKRF
QPPETEQHLSRSSFSFFFLCDTIRPETTRWVQSVTYRATRSVSSRLLSSL
AVSFRPPPVPL
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mRNA from alignment at C-linearis_contig103:228762..229096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.831.1 ID=mRNA_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=335bp|location=Sequence derived from alignment at C-linearis_contig103:228762..229096+ (Chordaria linearis ClinC8C monoicous)
GTCCGTTCCACACAATACAAGCAATTGATTCAAACAGCGTGTGCTTGGCG
CCACACTGATTTTGCTTGGGTGATTGCCCAGTTTCCAACGGCAGCAGCAT
CAAAGCCAAGCAAGCTTGGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTC
CAACCTCCCGAAACAGAACAACACCTCTCTCGTTCCTCTTTCAGTTTTTT
TTTTTTGTGCGACACCATTCGACCAGAAACAACTAGATGGGTTCAATCCG
TCACATATCGCGCCACCCGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTC
GCCGTTTCTTTCCGCCCCCCTCCCGTCCCGTTGGT
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Coding sequence (CDS) from alignment at C-linearis_contig103:228762..229096+

>mRNA_C-linearis_contig103.831.1 ID=mRNA_C-linearis_contig103.831.1|Name=mRNA_C-linearis_contig103.831.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig103:228762..229096+ (Chordaria linearis ClinC8C monoicous)
GTCCGTTCCACACAATACAAGCAATTGATTCAAACAGCGTGTGCTTGGCG
CCACACTGATTTTGCTTGGGTGATTGCCCAGTTTCCAACGGCAGCAGCAT
CAAAGCCAAGCAAGCTTGGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTC
CAACCTCCCGAAACAGAACAACACCTCTCTCGTTCCTCTTTCAGTTTTTT
TTTTTTGTGCGACACCATTCGACCAGAAACAACTAGATGGGTTCAATCCG
TCACATATCGCGCCACCCGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTC
GCCGTTTCTTTCCGCCCCCCTCCCGTCCCGTTGGTCCGTTCCACACAATA
CAAGCAATTGATTCAAACAGCGTGTGCTTGGCGCCACACTGATTTTGCTT
GGGTGATTGCCCAGTTTCCAACGGCAGCAGCATCAAAGCCAAGCAAGCTT
GGAGTGGCAGGCAGCCAGGCAGCCAAGCGGTTCCAACCTCCCGAAACAGA
ACAACACCTCTCTCGTTCCTCTTTCAGTTTTTTTTTTTTGTGCGACACCA
TTCGACCAGAAACAACTAGATGGGTTCAATCCGTCACATATCGCGCCACC
CGGTCGGTCTCTTCTCGCTTGCTTTCTTCCCTCGCCGTTTCTTTCCGCCC
CCCTCCCGTCCCGTTG
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