mRNA_C-linearis_contig102.809.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.809.1
Unique NamemRNA_C-linearis_contig102.809.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: D7FYM7_ECTSI (Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM7_ECTSI)

HSP 1 Score: 487 bits (1254), Expect = 3.080e-164
Identity = 240/252 (95.24%), Postives = 247/252 (98.02%), Query Frame = 3
Query:   96 MSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            MSQ P+PHSA PIWHSEGTK+++VLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTR+DEKP RSA +TVELVKEL VTAGERDIYTGDAVEIT+ISKDGTSTQMFPLKKD
Sbjct:    1 MSQRPSPHSA-PIWHSEGTKDLQVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A835ZC48_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC48_9STRA)

HSP 1 Score: 383 bits (984), Expect = 8.360e-124
Identity = 185/243 (76.13%), Postives = 210/243 (86.42%), Query Frame = 3
Query:  123 AAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            A  +W +EG  +V    S IDHGVTQNPFERRWSPYDFNGGTTLA+AG DYVV+ ADTRMSTGY IMSRDQTKLHQLTSKCVIASAGC++DVTTLWK LD  M MY HN+ K+M+TPA AQMLANTLYYRRFFPYYSFNVL GLD +GKG+VFSYDAIGS+ERV YSASGSGQ+YIIP++DNLV FKTR D KP R+A +TV+LVK++F+TAGERDIYTGDAVEI +I+  GT TQ+F LKKD
Sbjct:   15 ALAMWSTEGQSDVRP--SDIDHGVTQNPFERRWSPYDFNGGTTLAVAGEDYVVIGADTRMSTGYQIMSRDQTKLHQLTSKCVIASAGCRSDVTTLWKMLDHRMVMYKHNIGKDMSTPAAAQMLANTLYYRRFFPYYSFNVLAGLDAEGKGAVFSYDAIGSYERVEYSASGSGQSYIIPVMDNLVGFKTRLDPKPVRTAEETVDLVKDVFITAGERDIYTGDAVEICIITATGTQTQIFNLKKD 255          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2DDA1_9STRA (Proteasome subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDA1_9STRA)

HSP 1 Score: 352 bits (902), Expect = 4.990e-111
Identity = 168/243 (69.14%), Postives = 201/243 (82.72%), Query Frame = 3
Query:  129 PIWHSEGTKNVEV--LSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            PIWHSEG  +V +   +  IDHGVTQNP+ERR+SPYDFNGGTTLA+AG D+VVVA DTRMS+GY I+SR  +KLH LTSKC++A+AGCKTDV TL   L++ M MYDH+  KEM+T A AQML+NTLYYRRFFPYYSFNVL GLDE+G+G+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D  P  ++ + V +VK+ FVTAGERDIYTGD +EI+VI KDG  T  FPLKKD
Sbjct:   54 PIWHSEGQASVPLGPTADTIDHGVTQNPYERRFSPYDFNGGTTLAVAGKDFVVVAGDTRMSSGYEILSRKVSKLHPLTSKCILAAAGCKTDVDTLTNMLNIKMQMYDHDCGKEMSTTAAAQMLSNTLYYRRFFPYYSFNVLAGLDEEGRGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRTDVMPDFTSEEAVNIVKDAFVTAGERDIYTGDTLEISVIKKDGIETITFPLKKD 296          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2SKB7_9STRA (Proteasome subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKB7_9STRA)

HSP 1 Score: 340 bits (872), Expect = 3.360e-107
Identity = 163/247 (65.99%), Postives = 196/247 (79.35%), Query Frame = 3
Query:  111 APHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            AP     +W SEG   +    S  DHGVTQNP+ERR+SPYDFNGGTTLAIAG D+VVVAADTR+S+GY I+SR+ +KLH LT +CV+A+AGCKTDV TL   L   M MY+H+M K M TPAVAQML+NTLYYRRFFPYYSFNVL G+D  GKG+VFSYDAIGS+ERVPYS+SGSGQ Y++PL+DNLV FK RQD  P  +  + V +VK+ F+TAGERDIYTGDAVEI VI+  G ++++ PLKKD
Sbjct:   10 APPPTPIMWSSEGAVALPAEPSAFDHGVTQNPYERRFSPYDFNGGTTLAIAGKDFVVVAADTRLSSGYEILSRNVSKLHPLTGRCVLAAAGCKTDVDTLRNTLHARMQMYEHDMGKAMDTPAVAQMLSNTLYYRRFFPYYSFNVLAGIDSDGKGAVFSYDAIGSYERVPYSSSGSGQNYMVPLMDNLVCFKNRQDTPPELTMEEVVRIVKDAFITAGERDIYTGDAVEIKVITASGVASEIMPLKKD 256          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2FLM8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLM8_9STRA)

HSP 1 Score: 338 bits (866), Expect = 3.410e-106
Identity = 167/242 (69.01%), Postives = 195/242 (80.58%), Query Frame = 3
Query:  129 PIWHSEGTKNVEV-LSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            PIW SEG    E      IDHGVT+NP+ERR+SPYDFNGGTTLA++G D+VVVA DTRMS+GY I SR+  KLHQLTSK V+A+AGCKTDV TL   L   M MY+H+  KEM+T AVAQML+NTLY RRFFPYYSFNVL GLDE+GKG+VFSYDAIGS+ER P+SASGSGQ+Y+IPL+DNLV FKTR D  P  +  + V +VK+ FVTAGERDIYTGDAVEI VIS  G +T++FPLKKD
Sbjct:   23 PIWSSEGPSAGEFGKRDHIDHGVTENPYERRFSPYDFNGGTTLAVSGKDFVVVAGDTRMSSGYEIKSRNVPKLHQLTSKTVLAAAGCKTDVDTLTNLLRTRMQMYEHDCNKEMSTTAVAQMLSNTLYGRRFFPYYSFNVLAGLDEEGKGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRLDPVPDMTVEEIVSIVKDAFVTAGERDIYTGDAVEIKVISATGVTTELFPLKKD 264          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2XWL8_9STRA (Proteasome subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWL8_9STRA)

HSP 1 Score: 332 bits (851), Expect = 4.050e-104
Identity = 159/254 (62.60%), Postives = 198/254 (77.95%), Query Frame = 3
Query:  108 PAPHSAAPIWHSEGTKN------VEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            P   +  PIWHSE + +      + V  S   H V+  P + RW PY+FNGGTTLAIAG+++VVVAADTRMS GY+I+SR+++KLH+LT KC++A+AGC+TDVTTL   LD+ M MY HN+  EM T AVAQMLANTLYYRRFFPYYSFNVLCG+D++GKG V+SYDAIGSFE VPYSASGSGQ+YIIPL+D+ V FK R   KP  +  +TV++VK  FVTAGERDIYTGD VEI V++ +G  +++FPLKKD
Sbjct:    2 PTVQNGVPIWHSESSNSTVKPYQLPVNGSSQKHEVSGGPVQHRWGPYEFNGGTTLAIAGSNFVVVAADTRMSQGYNILSRNESKLHKLTEKCILAAAGCQTDVTTLRNVLDIRMQMYQHNVGHEMPTTAVAQMLANTLYYRRFFPYYSFNVLCGIDKEGKGVVYSYDAIGSFESVPYSASGSGQSYIIPLMDSTVAFKNRTQPKPNYTIEETVDIVKSAFVTAGERDIYTGDEVEIKVLTAEGCRSEIFPLKKD 255          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: K0S6G4_THAOC (Proteasome subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6G4_THAOC)

HSP 1 Score: 325 bits (834), Expect = 3.360e-101
Identity = 163/266 (61.28%), Postives = 202/266 (75.94%), Query Frame = 3
Query:   54 EGRPIFSALQEGSTMSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            EG    S   +GS +S   +PH A P     G+  ++   SGIDHGVTQ P+ERR+SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT +CV+ SAGCKTDV  L   LD+ M +Y HN  K MATP+VAQML NTLYY+RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++  K R DE+    A + VE+VK+ F+TAGERDIYTGDAV+I VI+KDG   Q F LK D
Sbjct:   26 EGGASISVHFDGSNLSVAQSPH-ADP-----GSSAID--GSGIDHGVTQAPYERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S3PW57_9STRA (Proteasome subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW57_9STRA)

HSP 1 Score: 316 bits (810), Expect = 7.990e-98
Identity = 154/255 (60.39%), Postives = 191/255 (74.90%), Query Frame = 3
Query:  123 AAPIWHSEGTKNVEVLSSG------------IDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            A P+  SEG   + V  +             IDHGVTQ P+ER +SPYDFNGGTTLAI+G DY +VAADTR+STGY I+SR+ TKLH+LTSKCV+ SAGCKTD+  L   LD++  +Y HN  KEM+TP+VAQML NTLYY+RFFPYYSFNVL G+D++GKG+V+SYDAIGSFER P +A+GSGQ+++IPLLDN+++   R DEK    A + VE+VK+ FVTAGERDIYTGD +EI VI   G +   FPLK D
Sbjct:   19 ALPVHSSEGGATIPVSFTQNNPNADGEDYNHIDHGVTQAPYERSFSPYDFNGGTTLAISGPDYAIVAADTRLSTGYQILSRNVTKLHELTSKCVLGSAGCKTDIDQLRSVLDINQKVYHHNHRKEMSTPSVAQMLGNTLYYKRFFPYYSFNVLAGVDKEGKGAVYSYDAIGSFERTPVTATGSGQSFLIPLLDNVIKHNNRNDEKRDLPAEEVVEIVKDAFVTAGERDIYTGDMLEIKVIRASGITNISFPLKAD 273          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: A0A7S2N0R8_9STRA (Proteasome subunit beta n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2N0R8_9STRA)

HSP 1 Score: 316 bits (809), Expect = 1.050e-97
Identity = 156/253 (61.66%), Postives = 192/253 (75.89%), Query Frame = 3
Query:  123 AAPIWHSEGTKNVEVLSS----------GIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            A PI  SEG   + V  S           IDHGVT+  +ER +SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SRD TKLH LT KCV+ SAGCKTDV  L   LD+ M +Y HN  K M+TP+VAQML+NTLYY+RFFPYY+FNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ+++IPL+DN++  K R DEK    + + VE+VK+ FVTAGERDIYTGDAVEI VI+K+G   ++F LK D
Sbjct:   19 ALPIHSSEGDVTIPVSFSHGNNPNPHADDIDHGVTRATYERGFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRDVTKLHALTEKCVLGSAGCKTDVDQLRSVLDIKMKIYAHNHRKPMSTPSVAQMLSNTLYYKRFFPYYAFNVLAGVDAEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVIAHKNRCDEKRDLPSEEVVEIVKDAFVTAGERDIYTGDAVEIMVITKEGIKKEIFKLKAD 271          
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Match: B8BSP9_THAPS (Proteasome subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSP9_THAPS)

HSP 1 Score: 314 bits (805), Expect = 5.480e-97
Identity = 147/231 (63.64%), Postives = 185/231 (80.09%), Query Frame = 3
Query:  159 VEVLSSGIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLKKD 851
            +++  S IDHG+TQ+P+ERR+SPY+FNGGTTLAI+G DY VVAADTR+S+GY I+SR+ +KLH LT KCV+ SAGCKTDV  L   LD+ M +Y HN  K MATP+VAQML NTLY +RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER P+SASGSGQ ++IPL+DN++  K R D+K    + + VE+VK+ F+TAGERDIYTGDAVEI VI+  G  ++ F LK D
Sbjct:   50 LDIDGSNIDHGITQSPWERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRLDQKRELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIESETFKLKAD 280          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYM7_ECTSI3.080e-16495.24Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC48_9STRA8.360e-12476.13Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DDA1_9STRA4.990e-11169.14Proteasome subunit beta n=1 Tax=Dictyocha speculum... [more]
A0A7S2SKB7_9STRA3.360e-10765.99Proteasome subunit beta n=1 Tax=Rhizochromulina ma... [more]
A0A7S2FLM8_9STRA3.410e-10669.01Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
A0A7S2XWL8_9STRA4.050e-10462.60Proteasome subunit beta n=1 Tax=Fibrocapsa japonic... [more]
K0S6G4_THAOC3.360e-10161.28Proteasome subunit beta n=1 Tax=Thalassiosira ocea... [more]
A0A7S3PW57_9STRA7.990e-9860.39Proteasome subunit beta n=1 Tax=Chaetoceros debili... [more]
A0A7S2N0R8_9STRA1.050e-9761.66Proteasome subunit beta n=2 Tax=Lithodesmiaceae Ta... [more]
B8BSP9_THAPS5.480e-9763.64Proteasome subunit beta n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:560604..565650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score487.6
Seed ortholog evalue3.4e-135
Seed eggNOG ortholog2880.D7FYM7
Preferred namePSMB1
KEGG koko:K02732
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019748,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0098542,GO:0098827,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0179@2759
Ec32 ortholog descriptionProteasome, subunit alpha/beta
Ec32 orthologEc-26_002800.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons4
Model size2678
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.809.1prot_C-linearis_contig102.809.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 560699..563826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927372.7899215-UTR-C-linearis_contig102:560603..5606981622927372.7899215-UTR-C-linearis_contig102:560603..560698Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 560604..560698 +
1690879661.088647-UTR-C-linearis_contig102:560603..5606981690879661.088647-UTR-C-linearis_contig102:560603..560698Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 560604..560698 +
1622927372.8655334-UTR-C-linearis_contig102:563826..5656501622927372.8655334-UTR-C-linearis_contig102:563826..565650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 563827..565650 +
1690879661.1402562-UTR-C-linearis_contig102:563826..5656501690879661.1402562-UTR-C-linearis_contig102:563826..565650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 563827..565650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927372.806149-CDS-C-linearis_contig102:560698..5607241622927372.806149-CDS-C-linearis_contig102:560698..560724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 560699..560724 +
1690879661.1013365-CDS-C-linearis_contig102:560698..5607241690879661.1013365-CDS-C-linearis_contig102:560698..560724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 560699..560724 +
1622927372.816225-CDS-C-linearis_contig102:561015..5611381622927372.816225-CDS-C-linearis_contig102:561015..561138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 561016..561138 +
1690879661.1137927-CDS-C-linearis_contig102:561015..5611381690879661.1137927-CDS-C-linearis_contig102:561015..561138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 561016..561138 +
1622927372.8369794-CDS-C-linearis_contig102:561798..5619901622927372.8369794-CDS-C-linearis_contig102:561798..561990Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 561799..561990 +
1690879661.1238325-CDS-C-linearis_contig102:561798..5619901690879661.1238325-CDS-C-linearis_contig102:561798..561990Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 561799..561990 +
1622927372.8538356-CDS-C-linearis_contig102:563408..5638261622927372.8538356-CDS-C-linearis_contig102:563408..563826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 563409..563826 +
1690879661.1318407-CDS-C-linearis_contig102:563408..5638261690879661.1318407-CDS-C-linearis_contig102:563408..563826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 563409..563826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.809.1

>prot_C-linearis_contig102.809.1 ID=prot_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp
MSQGPAPHSAAPIWHSEGTKNVEVLSSGIDHGVTQNPFERRWSPYDFNGG
TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTD
VTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVL
CGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRQD
EKPTRSAPDTVELVKELFVTAGERDIYTGDAVEITVISKDGTSTQMFPLK
KD*
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mRNA from alignment at C-linearis_contig102:560604..565650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.809.1 ID=mRNA_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5047bp|location=Sequence derived from alignment at C-linearis_contig102:560604..565650+ (Chordaria linearis ClinC8C monoicous)
AGCAAGATCATTTCATTGCTCTCTCCAACGCACCCTCTGTACTATCTCGT GGTGAAGGCAGGCCCATCTTCAGCGCGCTTCAGGAAGGAAGCACCATGTC CCAAGGACCTGCACCGCACAGGTAACATCCTTCAGACACTCCACCGAAGA TGCAGCTTGTGCTACTTGTTTGTGCGGCATCCATGGAATTCGGTGTAGAC GAGTAGTGTAGTCCGATGCCACCAACAGCCCCGCGTGTGTGTGGTGTGTG TGTGCACAAGTCGTATGTGCGTTGTTTGGATCGTAAAATTGGCTCTCAAG CTGACTCCACGGCTCTAGTCGTTCGTTGCGTTCGGGAGCTGTCGTGTGCC TGGTCCCCAAAAACCCTCCCTTTTTCTCCCTATCCCGTTTCGCTCTTTCT CATCATTCCTAGTGCGGCGCCTATATGGCATTCGGAGGGTACAAAGAATG TGGAGGTGCTTTCGTCAGGGATCGACCACGGGGTGACTCAAAATCCATTC GAGCGGAGATGGAGCCCGTATGACTTCAATGGCGGGTGAGGCGGAATTGA GAACAATCTCTTGCGCACATCGTCCGCTCCGTACTTCTAGATGAGTATTT GTAGCACCACCGGCAGGAGAACACACGACCTCCTGCACCCACCTGCTGGG TGGCCTGTGAATGTAGTCGTCTCGTTTGCTAAGGCTCCATGATTAATGTT TTTGTGCGAAATGCCTCTTGTGAAAACAGTTTGTGATTTTGTGTAACAAT TGTTCATTGTTTTCGGAACGAGCGAGCGAGGGTCTTTTGACCCTCTGACC CAACCTCCTTTCACGAAACTGCTGTCATCATGCGGACACCCTGTCCTACC CGGCCTTGGTGGACCATTCGTTGAACGCTGTTCACCTGTTATCTGACCTA GGTGCGTTGTTTCCATGTGGTACGCGACCCTCCAATGACTCAGCTAGCTT GAAATCGGTAGAGCATGGTACCCAACCAGTACAACCAGGTTGCCGTATGG TGCACTTCGGGTATTTTCGTATTTTCCCTCTCCTTTGATAGATGCCCATT GAAAAAATCCAAGCTTGGGGAATGAGCGAGTTCATGAAAGAAGGTATTGG TACAGAGGCAGGAACAGCAGTCCCACGTATCGTTGACCTGCTTGGTATAC ATTCTCTTGTCCTTTTCGTCTTTCGAAACGTTGTGCCACCTCCAGCACTA CCCTTGCTATCGCAGGGGCCGACTACGTGGTGGTTGCAGCCGACACCCGG ATGAGCACAGGATATTCCATTATGTCACGTGATCAGACCAAGCTGCATCA GCTCACATCCAAGTGCGTGATCGCTTCTGCTGGTTGCAAAACCGACGTTA CAACCCTTTGGAAGGAGCTGGACGTGAGCATGACCATGTAAGTGTGAACT GGCCACGATTGGTTGTGCGAGCATTATTTCCCTTTCTCTGGCATTCTCCC AACCTGATTTTTTTTTTCGCAGACTCGCAGCGCACAGGCCGCTCCAAACA GAGCACCTGTTTGTTCGTTCGTCTGAAGCGACTAGAATACGGTGTCATTC GTTGAGTTGAGACCGTAGAAGGCGACAGGGATACTTCTTAGGTGCAACTC AACTGTTCGATTCAAGCATCAGCAACCCTTGACAAGCTGCAGGATTGAGA ATATGACGACGCTTATATACCACCGAGTAGCCCTCTTTGCGGTCTTGATT CACACGATACCGTCGGGCAACGGTGCCACCCCTCTCGCCGAACTCATGAA CCCAAAGTTCCAGCTACCTGCTGTACATCTCTGGCGGAACGCCCACTTGT GACCGTCAAAATAACTAAACGCTGTTGCATAACGCGTGAAAATCCTGTCA CAGTCAGTCCGCTGCGTGTCGTCACCGCTTGCATAGCCTTGGGGGGACTG CTGTTCTGGATCATTGATCCGGCCGATTGAAACCAATATTGAAGGTTCTA GTTGCAGACTAGCCGCAGTTCTGCACCTCTGCAATACCAACTCTTTTTTC TCGAAACACCTCGCAACTGCGCACGTGTTGTTTGGTCAGCCCCCTCTTTA TTAGTAGACTGTGCCTCAAATTTGAACGGGTACCGATAAAATCTGCATCC ATGGCCGTTGGTTGGCCCACAGAATGGTCTAGTATTCAAGATCAGCATGT ACACATAGTGGGGGATGCATCATTTGCGAGTTTGATGCTTGTGGTATTTT GTTGCAGAAAAGGAGAGCCACCTACATTGTTTCGGGCGGAGATTGATCGT CCCAAGCAGTTTCTTGCGGTAGAGGCCAGATTTGCAAGCATGTACACAGC CAGTATCGTGGTAGTTGGCGTCGTTAAAGGATGTAATAGATTCACCGTTA CACACCATGTGATATGACATGGCACGGTTCGCCTTCGCTCTCCATCTTCT AGCACGTCCTCACACATAGCGGTTTGACTGGTAACTGTACTTACCGCCAA TGTGCGCGCGATGGCACGCCCCCAAGGCCGATTTTCGAAAGCAGATTGCT CTACAATGAGGAGCACGACGGCGTTATTTGGAAAGGTCTTCTTGAGTGCT ACCAGTGACGTATCTTTCCCCGTGGTTGTGGAGTAACCCATTCCCGAATT GAAAATTGGTCTTGGCGGGGTGCCATCACATACACAATTTCACGGCGCTG CCCCACGACTAAAAGCTCGAAACTTTGAAGTTGAAGTGCCTGCCTGGTGC ATGGTCGCGTGCCTATTTTTCCGTCCAGCCCTGCGATTTTCTTGGATTCC ACCTGAGAGCTTTTGCACGATCATGCTTGTTTGCACGCGCGTGCCTCACT TGCAGGTATGACCACAACATGGAAAAGGAGATGGCCACCCCAGCTGTGGC GCAGATGCTTGCGAACACCCTCTACTACCGGCGATTCTTCCCGTACTACT CGTTCAACGTCTTATGTGGCCTTGATGAGCAAGGGAAAGGATCTGTGTTT TCCTACGACGCTATCGGGTCGTTCGAACGAGTGCCGTACAGTGCGTCAGG CTCTGGCCAGACCTACATCATTCCGCTCCTTGACAACCTAGTAGAATTCA AAACACGGCAGGACGAGAAGCCTACCCGTTCTGCTCCTGATACGGTGGAG TTGGTCAAAGAGCTTTTCGTTACGGCAGGAGAACGCGATATCTACACCGG GGACGCGGTAGAGATCACAGTTATCTCAAAAGATGGCACATCGACACAGA TGTTTCCTCTGAAGAAGGACTAAGCGTGTTAAAGAGAGGGTTGTGGGGCA CTTGTGGGGTCTAGTGTTGGTATTTATATTTGACATGCTTTTCGAGCGCA CTAACACAGTGTTTTGTGCTTCTGACAATTCATGGTAACGTATCCAGCAG CGCAGGGCCCAATTGGGTGCCGTGGTGAGGCCAGTGGCGTGGCAAATGTT CGTGAGGATCTTTGGTCCTGTCTTTTGACTTGTACGATTTCTGACGGGTC ATGCCTCGCGTGTATTCCTTGTGGCAAAAGCGCGATCCGGTTCTGCACGA TGGTTGCAAACGCCGAATTACGGGCACAATCGAGGGTTTGCACTGGACCA GGACTCGATCCCAGCTATAGGCTGGGCACCTATGACACGTTGCACGCCCC GCCCCTCCTGAACGCCGTAGGAGTTGTGTTGTTTCGCCGTGACGATGCGC CATGCATGGTCACTCTAGACGTAAAACAGATTTGGCTCCGATTCACGAAA CCAACAAAACCATACACTCCAAAATGTTTTTCGACAATGGTGAGCTTGTC AAAAGTCCTTTAAACCAGGAGCCAATCCGCCATCCTTGGAATACTCACTC TGTCATGAGTTAAGTAAGGTACAGGTTCGCGAGGTAAGCGCTGGGAGAGC TACCTGTCTGATCCGTCATGACCAGTCTCTCGTCTCTTCTCAGCCAGGGA GAGCTTGGTGAGACGAGCGGATAGGGTCGATAGAATCATACGGAATAGCG GGATACGTTGGACAGAGTAAACAGGTGATACGTTCACGTGAAGGGGTCAG ACTTTGTTGTCGGGGTGTTGATCAGTTATCTCTGGGGCCGTTCGTTCAGC ACAAGTTCGTGTCGCAATGCATTTTTGGGTGTGACGAGAACTATAGGAAT TTCATTGTTCGCATGGCTGTGTTTGCCGTTTTCTCCGGGCGCTCCTATAA CCCCATCCATCCAAAGACTCACACCCATCCATGCGCTCTGATGAAGTCGC TGTTGGAGTAGACGAGTCCTGCTGACAGGTGAGGATGCGCGCAATAGCAC CATGTAGACGTCGGCCACCAACTTGGGTATGATTTGGACCTGGGCCATAG GACCTTGGGCCGGGGCCGTTGAGGATACGAGGATACACGCAGGGGATTCC GTCGTAAGAAAGGTACCCTGATATGAAACTGCGTCGCCCCTGGTGGAGAT TCATTCAGTAGAGTTTATACAGAATTTAGGTCGGGTGAACTTTTGGGGCC AGATTCGCGTTTTATGTATATTCGGGCTCCAAGCCCCCCCGATATAAAAC TCGATATTCAGGTAAATCTCGGTTCTTGAGGATAAAATCATGGGACTGAC TGTCGTCAGCTCGAGGGCAGGAGGGAAAAACAAAACTCGTTTTGTGGGGC GGGGTCCTCGTTGATTTCCTGAATGTTAAAAGATACCGTAGATGCGAGGG TGGGAGAAGAAGCTGTAAATTGGAGAGGAACGTAGTCGCCGACTGGCTGC TGTGGGTTTTGAGGTGTGGCGGCAGCTGACCCCTGCCCGAACTGCGGACT GGTATTGTTCAAGGGGGGAGTGTTCGAGCGGGGAGCAATATTCCATATTC CGCCAATTCCTCGGGAGAGAGCGGTTGTTGCGCCTGAGACGGCTCCTCCT GCGAAACACTCTCCTCGCCGCAACACTGGTGTGTTGGTGTGTGTATCGCA CGACCCCCACCCGCTGGGCGCTGAAAGTATGTGGCGCAACTTAGCTTTTG CCGCCGCGTCCGGACTGCTCTGAGTCTCTTGAGTGCTGTGCGGATTGTGC GCGGTTGGAAGAAGTGTGGGTGTGTCTCATTTTTCCCGGTCTGCGTG
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Coding sequence (CDS) from alignment at C-linearis_contig102:560604..565650+

>mRNA_C-linearis_contig102.809.1 ID=mRNA_C-linearis_contig102.809.1|Name=mRNA_C-linearis_contig102.809.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig102:560604..565650+ (Chordaria linearis ClinC8C monoicous)
ATGTCCCAAGGACCTGCACCGCACAGATGTCCCAAGGACCTGCACCGCAC
AGTGCGGCGCCTATATGGCATTCGGAGGGTACAAAGAATGTGGAGGTGCT
TTCGTCAGGGATCGACCACGGGGTGACTCAAAATCCATTCGAGCGGAGAT
GGAGCCCGTATGACTTCAATGGCGGTGCGGCGCCTATATGGCATTCGGAG
GGTACAAAGAATGTGGAGGTGCTTTCGTCAGGGATCGACCACGGGGTGAC
TCAAAATCCATTCGAGCGGAGATGGAGCCCGTATGACTTCAATGGCGGCA
CTACCCTTGCTATCGCAGGGGCCGACTACGTGGTGGTTGCAGCCGACACC
CGGATGAGCACAGGATATTCCATTATGTCACGTGATCAGACCAAGCTGCA
TCAGCTCACATCCAAGTGCGTGATCGCTTCTGCTGGTTGCAAAACCGACG
TTACAACCCTTTGGAAGGAGCTGGACGTGAGCATGACCATCACTACCCTT
GCTATCGCAGGGGCCGACTACGTGGTGGTTGCAGCCGACACCCGGATGAG
CACAGGATATTCCATTATGTCACGTGATCAGACCAAGCTGCATCAGCTCA
CATCCAAGTGCGTGATCGCTTCTGCTGGTTGCAAAACCGACGTTACAACC
CTTTGGAAGGAGCTGGACGTGAGCATGACCATGTATGACCACAACATGGA
AAAGGAGATGGCCACCCCAGCTGTGGCGCAGATGCTTGCGAACACCCTCT
ACTACCGGCGATTCTTCCCGTACTACTCGTTCAACGTCTTATGTGGCCTT
GATGAGCAAGGGAAAGGATCTGTGTTTTCCTACGACGCTATCGGGTCGTT
CGAACGAGTGCCGTACAGTGCGTCAGGCTCTGGCCAGACCTACATCATTC
CGCTCCTTGACAACCTAGTAGAATTCAAAACACGGCAGGACGAGAAGCCT
ACCCGTTCTGCTCCTGATACGGTGGAGTTGGTCAAAGAGCTTTTCGTTAC
GGCAGGAGAACGCGATATCTACACCGGGGACGCGGTAGAGATCACAGTTA
TCTCAAAAGATGGCACATCGACACAGATGTTTCCTCTGAAGAAGGACTAA
GTATGACCACAACATGGAAAAGGAGATGGCCACCCCAGCTGTGGCGCAGA
TGCTTGCGAACACCCTCTACTACCGGCGATTCTTCCCGTACTACTCGTTC
AACGTCTTATGTGGCCTTGATGAGCAAGGGAAAGGATCTGTGTTTTCCTA
CGACGCTATCGGGTCGTTCGAACGAGTGCCGTACAGTGCGTCAGGCTCTG
GCCAGACCTACATCATTCCGCTCCTTGACAACCTAGTAGAATTCAAAACA
CGGCAGGACGAGAAGCCTACCCGTTCTGCTCCTGATACGGTGGAGTTGGT
CAAAGAGCTTTTCGTTACGGCAGGAGAACGCGATATCTACACCGGGGACG
CGGTAGAGATCACAGTTATCTCAAAAGATGGCACATCGACACAGATGTTT
CCTCTGAAGAAGGACTAA
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