mRNA_C-linearis_contig102.781.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.781.1
Unique NamemRNA_C-linearis_contig102.781.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A6H5JAV1_9PHAE (Plastocyanin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV1_9PHAE)

HSP 1 Score: 555 bits (1429), Expect = 4.600e-182
Identity = 311/569 (54.66%), Postives = 354/569 (62.21%), Query Frame = 1 
Query: 1570 MSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKMPLYGKGEGG---------------DGSKSDMLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTK-----EPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYL-SAPRLQGGGDGRVVLAPGSRADLAVRCDGPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFNAAEKVSHLGQTYTWYGINGIQY-NASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEIFEKL 3210
            MSGAI+VEDPEGSLPPE+EAMREVVMVLQETNIESG LRNYKAASEI+GS MPLYG G G                +  +S++LHF TVNGQYQP+V+AQPGEA R+R++HGGNNDHMHVSLVP  AA             + G++E   AE    GG  +       + C LLTLARDGVYL  APRLQ GG G VV+APGSRADLAV C+  G YRL SSKGG        ++ +++SIM+YLG+ TDVFEGTLAF+DVGGD +DMELP KSP A G +RLLQDL+ +PDNEVSRFVFEFNAA+KVSHLG TYTWYG+NG+QY N+S ++RRVPLGSVEEWV+VNQRKGRGE                                                                    G Q                          G  V C+R  PGEVT DGHPFHLH NHFQ                      VV SSWGD+GPDW+VGDWRDTISIP PGNVTIRW ADDFTGEAVAHCHIFGHSDTGMMMNFEIF+ +
Sbjct:    1 MSGAIVVEDPEGSLPPEIEAMREVVMVLQETNIESGTLRNYKAASEIAGSNMPLYGGGGGSSRAESKDEKGETAQDEEGESEVLHFATVNGQYQPIVQAQPGEAFRVRLIHGGNNDHMHVSLVPTDAAXXXXXXXXXXXXXQGGRREDGPAEDHSGGGKAS-------SGCTLLTLARDGVYLRQAPRLQSGG-GHVVIAPGSRADLAVLCEEAGVYRLASSKGG-------NDEEEQDSIMSYLGQETDVFEGTLAFVDVGGDALDMELPEKSPAAAGSDRLLQDLRDIPDNEVSRFVFEFNAADKVSHLGNTYTWYGVNGVQYTNSSHIMRRVPLGSVEEWVVVNQRKGRGE--------------------------------------------------------------------GEQ--------------------------GLPVGCDRGGPGEVTADGHPFHLHVNHFQ----------------------VVGSSWGDDGPDWSVGDWRDTISIPTPGNVTIRWRADDFTGEAVAHCHIFGHSDTGMMMNFEIFDSI 438
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: D7FH25_ECTSI (Multicopper oxidase, type 1 is implicated in celullar iron transport n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH25_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 2.710e-154
Identity = 269/485 (55.46%), Postives = 307/485 (63.30%), Query Frame = 1 
Query: 1762 KSDMLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLS-APRLQGGGDGRVVLAPGSRADLAVRCDGPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFNAAEKVSHLGQTYTWYGINGIQY-NASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEIFEKL 3210
            +S++LHF TVNGQYQP+V+AQPGEA R+R++HGGNNDHMHVSL+PA A             + +E + A    G   AS       C LLTLARDGVYL   PRLQGGG G VV+APGSRADLAVRCD  G YRL SSKGG      G+++G+E SI +YLG+ TDVFEGTLAF+DVGGD +DM+LP +SP A G +RLLQDL+ +PD+EVSRFVFEFNAA+KV HLG  YTWYG+NG+QY NAS V+RRVPLGSVEEWVIVNQRKGRGE  + C P                      EPID+    G S +G D                                     GGAV      G      V C R  PGEVT DGHPFHLH NHFQ                      VV SSWG +GPDW+VGDWRDTISIP PGNVTIRW ADDFTGEAVAHCHIFGHSDTGMMMNFEIF+ +
Sbjct:   35 ESEVLHFATVNGQYQPIVQAQPGEAFRVRLIHGGNNDHMHVSLIPADAXXXXXXXXXXXXXERREYSTAEDHSGGGKAS-----GGCTLLTLARDGVYLRPVPRLQGGG-GHVVIAPGSRADLAVRCDEAGVYRLASSKGG------GDDEGEEGSIRSYLGQATDVFEGTLAFVDVGGDALDMDLPEESPAAAGSDRLLQDLRDIPDDEVSRFVFEFNAADKVPHLGNMYTWYGVNGVQYTNASHVMRRVPLGSVEEWVIVNQRKGRGEGEQGCRPPP---------LPTPPRPNAKEEPIDAG--TGGSQNGDD------------------------------------EGGAVXXXXXXGR---VPVGCGRGGPGEVTADGHPFHLHVNHFQ----------------------VVGSSWGGDGPDWSVGDWRDTISIPTPGNVTIRWRADDFTGEAVAHCHIFGHSDTGMMMNFEIFDSI 435
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A835ZAK4_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK4_9STRA)

HSP 1 Score: 346 bits (888), Expect = 1.140e-102
Identity = 238/711 (33.47%), Postives = 311/711 (43.74%), Query Frame = 1 
Query: 1066 TAFSRDLTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKMPLYGKGEGGDGSKSDMLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDGPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFNAAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEI 3198
            T +S  L  PE R+S  G L TTL V   + + GP+  SL  R+Y+  VPGPTL ++PGD + + L N L          G G     D  ID A      +   N TNIH HGLHVSP+G+ DNIYR+  PG+ L+Y Y +PP   PG F+YHPH +GSS+VQ L GM+G IIV D   ++P E+ AMRE+V V+QE ++   A         I+  K  +     G        L F  VNGQ+QP++  + GEA+RLRVVH G                                             ++ D   C L  +ARDG Y   PR   G    V+++PGSRADL + C   G +RL S+            D   E +  YLG  + V  GTLAF+   G ++  E     P  +    L  DL         R++FEFN   KV   G+ YTWYG+NG  Y+A  V R VPLG+ E+W IVN   G    +                                 GDVG+                                                                       T D HPFHLH NH+Q +                    +V ++     PDW +GDWRDTI++PAPGNVT+RW A DF G++VAHCH+F HSDTGM  NFE+
Sbjct:    6 TEYSAPLRQPEKRYSAGGVLNTTLTVQSTIVELGPV--SLIGRSYDGQVPGPTLIIRPGDTVNLELHNRL----------GVGPAQGADAFIDNA------QGHDNYTNIHTHGLHVSPAGIADNIYRKCAPGETLRYRYSIPPSQPPGTFFYHPHLEGSSAVQMLSGMAGVIIVADDPVTVPAELAAMRELVAVVQEVDVPRMAT--------IALDKRVIRNAAPGA------ALQFFAVNGQFQPLIEVETGEAVRLRVVHAGE-------------------------------------------WTNADSAVCALHVIARDGAYHREPRTLPG----VLMSPGSRADLVITCRSSGTFRLHSA------------DLPNEDVDRYLGGKSRVRVGTLAFVTARGPRVRREEVMPLPPTLPARAL--DLITADVPAERRWIFEFNQGAKVLRAGRNYTWYGVNGQAYDARVVQRSVPLGATEQWTIVNAVYGEKGLLG--------------------------------GDVGA---------------------------------------------------------------------PPTRDNHPFHLHVNHYQAS-----------------RACIVDAAPSIYSPDWQIGDWRDTITVPAPGNVTVRWVAADFKGKSVAHCHLFSHSDTGMTANFEV 505
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: D7FH26_ECTSI (To be related with Esi0104_0074 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH26_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 1.110e-100
Identity = 171/263 (65.02%), Postives = 194/263 (73.76%), Query Frame = 1 
Query:  898 IRAKGKTAVTLTLAIAA---LWGLSTLVVFDVRSNTSAGGGAIEPAGWQDRQPLDGEALTAFSRDLTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESG 1677
            IRAK +TAV +TLA AA   L GL+ + VF   S+ +A        GWQ+RQPL G  LTAFS +L SPENR+SKDGELRTTLR+AP V +AGPLAP LNVRAYE SVPGPTLRVKPGDRL                                    GKVEAWPNVTN+HVHGLHVSPSGV DNIYRRA PGD+L+Y+Y+LPPDHYPG FYYHPHF+GSSS+QTLGGMSGA++VEDPEG+LPP++EAMREVVMVLQETNIESG
Sbjct:   32 IRAKPRTAVAVTLATAAVATLSGLALVQVFGAGSDVAAAAAGSASTGWQERQPLAGPTLTAFSENLKSPENRFSKDGELRTTLRIAPTVAKAGPLAPPLNVRAYEGSVPGPTLRVKPGDRLV-----------------------------------GKVEAWPNVTNLHVHGLHVSPSGVSDNIYRRANPGDSLEYVYDLPPDHYPGTFYYHPHFEGSSSMQTLGGMSGALVVEDPEGTLPPDIEAMREVVMVLQETNIESG 259
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A2D4BR45_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR45_PYTIN)

HSP 1 Score: 249 bits (635), Expect = 6.380e-68
Identity = 206/736 (27.99%), Postives = 287/736 (38.99%), Query Frame = 1 
Query: 1132 TLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKM---PLYG---------------------------------KGEGGDGSKSDMLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDGPGA-------YRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFNAA-EKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEIFEK 3207
            TLRVA      GP+A     R YE S+P P L ++PGD L V  VN+L          G  E G         +        PN TNIHVHG+HV P+G+ DN+ R   PG+ +     +P +H  G+ YYHPH+ GS ++Q  GGM+GAI+VED E +LP E + MR  V++LQE   + G   + +  +E S S++   P Y                                  K   G   +     F   NGQ+ P +  QP E + LR+V+ GN   + +++               PG                          C +  +A+DG+YL APRL       ++L+ G+RAD+ +RC  P +        R + SK              + ++ ++LG  TDVFEG +AF+ V G   DM    ++P            + LP +    F FEF+ +  K    G  Y  Y IN + +N + + R + LG V+EWVIVN R+                                                                                                              + G V    HPFH+H N FQ                      +V+ S G  G D+ VGDWRD I++P PGNVTIR    DF G  VAHCHI GHSD GM+   +IFEK
Sbjct:    2 TLRVAATRFSNGPIA--FWTRTYEHSIPAPVLSLRPGDTLHVEQVNEL----------GPNEPG---------TWSPNTYHDPNSTNIHVHGMHVDPTGISDNVLRTLAPGETMVSRIRIPENHPRGVSYYHPHYHGSVNIQIAGGMAGAIVVEDDEDTLPDEYKHMRRHVVMLQEFRFDGGPGSDLRQIAEXSRSRLDMRPEYTPKVLLDEQVRTLFPYVARTPQTTVEGVGISAALKAHRGHRGRPSXSRFFVANGQFLPKLEVQPNENVLLRLVNAGNGATLELAI---------------PG--------------------------CTMHVIAQDGIYLRAPRLSK----LLLLSSGARADVVLRCLPPDSNDPHRESLRPLFSK-------------KDVTVXSFLGAGTDVFEGIVAFVHVSGPSRDMRAVERAPPVPALYA-----RDLPASAKDPFRFEFSMSMTKQKKDGFMYKQYFINHVPFNLTSM-RNLTLGVVDEWVIVNDRE--------------------------------------------------------------------------------------------------------------EDGSVATKNHPFHIHTNAFQ----------------------IVAMSHG-AGVDYEVGDWRDVIAVPTPGNVTIRLKPMDFAGRIVAHCHITGHSDMGMVALVDIFEK 519
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A8J6C9A0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9A0_DIALT)

HSP 1 Score: 256 bits (653), Expect = 3.230e-67
Identity = 261/839 (31.11%), Postives = 350/839 (41.72%), Query Frame = 1 
Query: 1042 QPLDGEALTAFSRD--LTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRAS-----------------LEGKVEAW------PNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGS----LPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKMPLYGKGEGGDGSKSDMLHF----VTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRD----DTK--------------EPGQKEKEA-------AEAGGAGGAPAAS-------SDIDM------------NSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDGP-----------GAYRLVS----------SKGGAAGRGGGEED--GDEES--IMAYLGKNTDVFEG---TLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFNAAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVE--LAEDEGEGGGARVACE------RTD-------PGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEI 3198
            +P  G  + A +R   L  PE R S+DG LRTTL VAP        A  + VRAYE SVPGPTL V+PGD L + + N L     + + A             RAS                  +G V         PN T++HVHG+HVSP    D+IY   GP     Y YE+P  H  GIFYYHPH  GSS VQ  GGM+GAI+V +P  +    +PP+       ++V+Q  N+ +G +RN   AS  +GS +PL G      G   D  H     VTVNGQ +P    + GE  RLR+VH G+ND + V++VP  + G        D +              EPG     A       A A  AG  P A+       +++D               C LL LARDGV L  PR Q     RV+ +PGSRA+L VRC G            G Y L +          + G   G G G+E   G+ E+  + A++G  +D+      TL  +   G + D       P + G  R                     A +  S +   Y+   + G+          VPL   +  + V+  +G    +    P +                T            G +    + A  + A G  Q  S W   G+  +   G  +     G   E  L  +   G   R+         RTD        G      HPFHLH NHFQ                        +++      D+ VGDWRDTI++P PG+VT+RW ADDFTG ++AHCHIFGHSDTGM M+FEI
Sbjct:   75 EPWPGTRVRARARGEALVQPEVRRSRDGVLRTTLNVAPFHFAVPGFA--VTVRAYEGSVPGPTLLVRPGDVLAIEVDNALGTEAAEDADAARARSAPHARSRARASSQRSSASAPGHEYAQPGADGAVPRAFNSLHRPNSTSLHVHGMHVSPRPGADDIYTVVGPRSVRTYTYEIPRSHPVGIFYYHPHLHGSSGVQAHGGMAGAIVVAEPGDANSTDVPPDASLN---LLVVQTFNVAAGTVRNLAWASRAAGSWLPL-GLRTALVGGAGDADHVEGVAVTVNGQLEPRAALRAGEWTRLRLVHAGHNDLLLVTVVPVHSGGAASPRAPTDARPARVGRGPLAAGPAEPGADSAPADADADLAAAARAAGAFPLAAEREAALLAELDTIEAAGGLAAAPPRGCALLVLARDGVRLREPRTQS----RVLFSPGSRAELLVRCAGDAEGSGGEHGAYGEYELRADALPQQPPRHTAGAPNGAGAGKEATIGEAEAAILRAHVGSGSDMASARLLTLVAIPRHGTRGDAP-----PASAGRARXXXXXXXXXXXXXXXDTAAVRALD--SPIAPLYSRLDLRGVT---------VPL---DAHLDVHMLQGAAPIIRPTPPDAPPPVTRNSSAAVSTTATIATGWAQGGAKEGPAGKSEEHAHRSGAAGVPQPYS-WY--GMADREYDGSIMRRVALGAVEEWTLRNERALGAAVRLPLALPAEGARTDGLAALLAAGAPADTNHPFHLHVNHFQIIAIHAPAQPDGADALQADRAAAAAAA-----VDYEVGDWRDTITVPTPGSVTVRWRADDFTGVSMAHCHIFGHSDTGMSMDFEI 876
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A8K1CHK1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHK1_PYTOL)

HSP 1 Score: 242 bits (617), Expect = 3.960e-64
Identity = 208/752 (27.66%), Postives = 296/752 (39.36%), Query Frame = 1 
Query: 1060 ALTAFSRDLTSP---ENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKMPL---------------------YGKGEGGD--------GSKSDMLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDG--PGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFV-----FEFNAAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMMMNFEI 3198
            AL     DL +    E R S  GEL TT+ V     Q GP+  S   R+YE S+PGP L ++PGD L ++LVN+L+      +V G                       PN TN+HVHG+HV P+G+ DN+ R   PG +L     +P +H  G+F+YHPH+ GS  +Q  GGM G ++VED   +LP +  AM+  V+ LQE   + G   + + A+E S SK+ +                     +   E  +          +  +  F  VNG Y P +  QP E +RLR ++ G +  + ++ VPA                                        C    +A DG YLS PR        + L+PG+RAD+ + C+   P      S +   A +        +  +  +LG ++DVF+G LAF+ V G   +M   T  P        + DL+ L D++ ++       FEF    KV   G  Y  Y IN   ++   V+R +PLG V+EWVI+NQ+                                                                                                               + G+ T   HPFHLH N FQ                      +V  S G EG D+ +GDWRD I++P PGNVTIR+   DF G  VAHCHI GHSD GM+   +I
Sbjct:  121 ALNTLIEDLPALPELEVRRSVRGELNTTIHVREHQFQFGPI--SFWTRSYEGSIPGPMLSIQPGDTLNLHLVNELEQ-----NVPG--------------EWAPNTYHHPNTTNLHVHGMHVDPTGIADNVLRVVEPGKSLFTQIHVPANHPRGLFHYHPHYHGSVFLQMSGGMMGPLLVEDDAETLPKDYRAMKTHVLALQEFRFDGGIAADLRKAAEASRSKLDMNLAYTHHAVLDTHVRTLFPHVHRPSEAIEEIPMATSLAERPALSRFFVVNGAYLPRIDVQPNENVRLRFLNAGGSSTLQLA-VPA----------------------------------------CSFHLIANDGNYLSQPRPVK----LLFLSPGARADVVINCEANDPSDPHRESLRPLQAVQ--------DVGVNDFLGASSDVFQGVLAFVHVSGPSREMGPVTSVPPPPALYAGV-DLRTLSDDDRAKMDANPLHFEFTMGGKVKKDGFKYKNYFINHALFSLDNVLREMPLGVVQEWVIINQQD--------------------------------------------------------------------------------------------------------------ESGKATNKNHPFHLHTNAFQ----------------------IVDMSHG-EGVDYKIGDWRDVIAVPTPGNVTIRFRPVDFKGPVVAHCHILGHSDAGMVALVKI 664
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A5D6YCR1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCR1_9STRA)

HSP 1 Score: 248 bits (633), Expect = 6.560e-63
Identity = 228/759 (30.04%), Postives = 305/759 (40.18%), Query Frame = 1 
Query: 1057 EALTAFSRDLTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVE---DPEGSLPPEVEAMREVVMVLQETNIESGALRNYKAASEISGSKMPL--------------YGKGEG--------------------GDGSKSDML-HFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDGPGAYRLVSSKGGAAGRGGGE-----EDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDM----ELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEFN---AAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHPSSSXXXXXXXXXXXXXXXTELREPIDSRGDVGSSASGSDGAAGAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGARVACERTDPGEVTYDGHPFHLHANHFQGAGXXXXXXXXXXXXXXXXXXXVVSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFGHSDTGMM 3183
            + LT     L  PE R S +G L TTLRV PA    GP+  S   R+YE SVPGPTLRVKPGD L + LVN+L      P+  G              +        PN TN+HVHG+HV P+GV DN+ R  GPG   +    +P DH  G+F+YHPHF G+   Q  GGM+GA++V+   D   +LPP   AM + ++VLQE     G   +  A +E + S++PL               G   G                     DGS    +  + TVNGQY P +  QP E   LR+V+ G      V L+  +  G                                    C L   A DG+YL+ PR        ++LA GSRAD+ + C+ P A    ++ GG + R   E     +   + ++  +LG  +DVF G +AF+ V G+ + M    +LPT +P    E   L  L       ++   FEF        V   G +Y  Y +NG  ++ +   R +PLG V+EWVIVN+R                                          VG                                                                     GEV    HPFH+H N FQ                      VV+ S G EG ++ VGDWRD IS+P PGNVTIR+   DFTG  +AHCH  GHSD GM+
Sbjct: 1155 QQLTQQLAALRQPEERVSVNGVLNTTLRVRPAHFTDGPI--SFWTRSYEGSVPGPTLRVKPGDTLTIELVNELG-----PNTPG--------------NWAKNTLHSPNTTNLHVHGMHVDPTGVADNVARVVGPGARARTQIHVPRDHPRGLFHYHPHFHGAVFAQMGGGMAGALVVDPDADEAHALPPAYRAMAQQLLVLQEFRFSGGLGSSAVAVAEAARSRLPLRLQYTAKAALDAAVQGLYPGVHQTQPSIAIERDPALDKLFPDGSAGPPITDYFTVNGQYLPKIEVQPRENRLLRLVNAGG-----VCLLQLSVPG------------------------------------CTLTLTATDGIYLAVPRAVE----TLMLAAGSRADVVLTCE-PNAPAAAAA-GGLSER---EPLRPLQSVRDTALDGFLGTTSDVFAGVVAFVHVTGEPLQMAPVTQLPTPTPL-YDEAASLLTLSGADRAAMAPEPFEFEFTMGGPPVLKDGFSYKNYFVNGKAFDGTSS-RDLPLGVVQEWVIVNKRL-----------------------------------------VG---------------------------------------------------------------------GEVAKANHPFHMHTNAFQ----------------------VVAMSHG-EGAEYRVGDWRDVISVPTPGNVTIRFRPVDFTGVVLAHCHTLGHSDGGMI 1707
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: A0A7S1CLJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLJ5_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.800e-55
Identity = 148/411 (36.01%), Postives = 201/411 (48.91%), Query Frame = 1 
Query: 1114 DGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQETNIESGA----LRNYKAASEISGSKMPLYGKGEGGDGSKSDMLHFVTVNGQYQPVVRA-QPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCDGPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSP 2331
            DG +RTTL VA A   AGP   S   RAY   VPGPT R+  GD + V LVNDL   + D S+   G+                    PNVTN+H HGLHVSP   GD+++ R GPG A  Y  ELP  H PG+ ++H H  GS+++Q  GG+ GAI+VED   + PPE+ AMR++V+V+Q   +++      + +  AA  ++GS M L    E GD + +   +F+TVNG +QP +    PGE +RLR+V  G+   M + +               PG                          C +  LA+DG+YL APR        V  APGSR D+AV C   G Y+L +S            DGD     A+        EG +A ++VGG  + M LPT  P
Sbjct:   43 DGVVRTTLTVAAARWDAGPA--SFMTRAYNGDVPGPTFRLSAGDTMQVRLVNDLGPDDADYSMNEYGK--------------------PNVTNLHTHGLHVSPEAPGDDVFARVGPGMAQDYTIELPDSHAPGLHWFHAHVHGSTNLQVQGGLVGAIVVEDDAATAPPELLAMRDLVLVIQNVVLDASTAPDPIASIPAAEYLTGSAMSL--DIEYGDAAAA--RNFITVNGDHQPTLDGVAPGEWVRLRMVQAGHGPFMALHV---------------PG--------------------------CAMALLAKDGIYLDAPRDVPF----VTFAPGSRRDVAVMCAAAGTYQLEAST-----------DGDMGEAGAF-----GQLEGVVASIEVGGGAVSMSLPTTLP 366
[Close]
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Match: D0NGN8_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NGN8_PHYIT)

HSP 1 Score: 207 bits (527), Expect = 1.970e-52
Identity = 159/552 (28.80%), Postives = 243/552 (44.02%), Query Frame = 1 
Query: 1081 DLTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESVPGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEGKVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPGIFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREV-VMVLQETNIESGALRNYKAASEISGSKMPLYGKGEGG----------------------------------DGSKSD-----MLHFVTVNGQYQPVVRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAAEAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPGSRADLAVRCD-----GPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVFEGTLAFLDVGGDQMDMELPTKSPTAM---GENRLLQDLQQLPDNEVSR--FVFEFNAAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRGERVEACHP 2586
            +L + E R S +GEL TT+ VA  +   GP+A     RAYE+SVPGP L +KPGD L ++LVN+L      P+VAG                       PN TN+H HG+HV P+G  DN++R   PG++      +P +H  G+F+YHPHF GS  +Q  GGM G I+VED   ++P E  A+++  VMVLQE     G + +   A++ S S + +     G                                   D SK       +  + +VNG+Y P ++ +P E + LR++H G                                           AS ++ +  C ++  A DG+Y++ PR        V+L PG+R D+ + C+     GP   R + S               +  +  ++G ++D++ G LAF+ V G+ +D  L T  P      G  + L +L  +    +    F FEF   +     G  Y  Y IN   ++ + + R +PLG V+EWVI+N+R   G      HP
Sbjct:  123 ELPALETRMSINGELNTTITVAEKLVDNGPIA--FYTRAYEDSVPGPMLVLKPGDVLNIHLVNNLG-----PNVAG--------------EWTANTMHEPNNTNLHFHGMHVDPTGTEDNVFRIVAPGESADTHLHVPLNHPRGLFHYHPHFHGSVFLQMGGGMVGPIVVEDDPATVPAEYAAIKQRHVMVLQEFKFTGGIMTSMVEAAKASRSTLDMQVMYTGKTKLDAQVRKLYPDVQETERPIRNAKLSKELLQETDSSKEKPQIPPIAQYFSVNGEYLPKIQVRPHENVLLRMLHAGGT-----------------------------------------ASLEVQVPGCSIMLAASDGLYMAKPRPME----TVILLPGARVDVVLNCEPATEVGPEILRPIQSV-------------KDPKLHGFMGNHSDLYSGVLAFIHVQGESLDEPLVTAVPPPSELYGPAKSLLELSAVDRAGMDPLPFEFEFTMGDPEMKDGFFYKPYYINHALFDGTSI-RTMPLGRVQEWVIINRRDESGAVTLKNHP 594
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAV1_9PHAE4.600e-18254.66Plastocyanin-like domain-containing protein n=1 Ta... [more]
D7FH25_ECTSI2.710e-15455.46Multicopper oxidase, type 1 is implicated in celul... [more]
A0A835ZAK4_9STRA1.140e-10233.47Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
D7FH26_ECTSI1.110e-10065.02To be related with Esi0104_0074 n=1 Tax=Ectocarpus... [more]
A0A2D4BR45_PYTIN6.380e-6827.99Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8J6C9A0_DIALT3.230e-6731.11Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8K1CHK1_PYTOL3.960e-6427.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YCR1_9STRA6.560e-6330.04Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1CLJ5_9STRA2.800e-5536.01Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D0NGN8_PHYIT1.970e-5228.80Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:238657..253860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.7
Seed ortholog evalue1.8e-68
Seed eggNOG ortholog42099.EPrPV00000015880
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Source PGD
EggNOG OGs1MF2P@121069,COG2132@1,KOG1263@2759
COG Functional cat.Q
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons10
Model size4119
Cds size2451
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.781.1prot_C-linearis_contig102.781.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 239419..252954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927369.1430886-UTR-C-linearis_contig102:238656..2394181622927369.1430886-UTR-C-linearis_contig102:238656..239418Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 238657..239418 +
1690879658.2825918-UTR-C-linearis_contig102:238656..2394181690879658.2825918-UTR-C-linearis_contig102:238656..239418Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 238657..239418 +
1622927369.276397-UTR-C-linearis_contig102:252954..2538601622927369.276397-UTR-C-linearis_contig102:252954..253860Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 252955..253860 +
1690879658.3966238-UTR-C-linearis_contig102:252954..2538601690879658.3966238-UTR-C-linearis_contig102:252954..253860Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 252955..253860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927369.1549716-CDS-C-linearis_contig102:239418..2397001622927369.1549716-CDS-C-linearis_contig102:239418..239700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 239419..239700 +
1690879658.2940629-CDS-C-linearis_contig102:239418..2397001690879658.2940629-CDS-C-linearis_contig102:239418..239700Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 239419..239700 +
1622927369.1662705-CDS-C-linearis_contig102:240515..2409191622927369.1662705-CDS-C-linearis_contig102:240515..240919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 240516..240919 +
1690879658.3057215-CDS-C-linearis_contig102:240515..2409191690879658.3057215-CDS-C-linearis_contig102:240515..240919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 240516..240919 +
1622927369.184131-CDS-C-linearis_contig102:241349..2414381622927369.184131-CDS-C-linearis_contig102:241349..241438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 241350..241438 +
1690879658.3159475-CDS-C-linearis_contig102:241349..2414381690879658.3159475-CDS-C-linearis_contig102:241349..241438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 241350..241438 +
1622927369.197436-CDS-C-linearis_contig102:241955..2420931622927369.197436-CDS-C-linearis_contig102:241955..242093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 241956..242093 +
1690879658.326744-CDS-C-linearis_contig102:241955..2420931690879658.326744-CDS-C-linearis_contig102:241955..242093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 241956..242093 +
1622927369.2076416-CDS-C-linearis_contig102:242667..2432581622927369.2076416-CDS-C-linearis_contig102:242667..243258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 242668..243258 +
1690879658.3363197-CDS-C-linearis_contig102:242667..2432581690879658.3363197-CDS-C-linearis_contig102:242667..243258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 242668..243258 +
1622927369.2174723-CDS-C-linearis_contig102:249911..2500331622927369.2174723-CDS-C-linearis_contig102:249911..250033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 249912..250033 +
1690879658.3468225-CDS-C-linearis_contig102:249911..2500331690879658.3468225-CDS-C-linearis_contig102:249911..250033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 249912..250033 +
1622927369.228762-CDS-C-linearis_contig102:250602..2507181622927369.228762-CDS-C-linearis_contig102:250602..250718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 250603..250718 +
1690879658.3553295-CDS-C-linearis_contig102:250602..2507181690879658.3553295-CDS-C-linearis_contig102:250602..250718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 250603..250718 +
1622927369.2423944-CDS-C-linearis_contig102:251067..2515721622927369.2423944-CDS-C-linearis_contig102:251067..251572Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 251068..251572 +
1690879658.3635085-CDS-C-linearis_contig102:251067..2515721690879658.3635085-CDS-C-linearis_contig102:251067..251572Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 251068..251572 +
1622927369.254358-CDS-C-linearis_contig102:252377..2525041622927369.254358-CDS-C-linearis_contig102:252377..252504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 252378..252504 +
1690879658.3721795-CDS-C-linearis_contig102:252377..2525041690879658.3721795-CDS-C-linearis_contig102:252377..252504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 252378..252504 +
1622927369.263797-CDS-C-linearis_contig102:252877..2529541622927369.263797-CDS-C-linearis_contig102:252877..252954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 252878..252954 +
1690879658.3817112-CDS-C-linearis_contig102:252877..2529541690879658.3817112-CDS-C-linearis_contig102:252877..252954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 252878..252954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.781.1

>prot_C-linearis_contig102.781.1 ID=prot_C-linearis_contig102.781.1|Name=mRNA_C-linearis_contig102.781.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=817bp
MFTAVFSTAGGKYDDQGTLGSCRRAFCQNVIDHIGRARARFSGRAIRAKG
KTAVTLTLAIAALWGLSTLVVFDVRSNTSAGGGAIEPAGWQDRQPLDGEA
LTAFSRDLTSPENRWSKDGELRTTLRVAPAVTQAGPLAPSLNVRAYEESV
PGPTLRVKPGDRLFVNLVNDLDLPEGDPSVAGAGEDGEGDGGIDRASLEG
KVEAWPNVTNIHVHGLHVSPSGVGDNIYRRAGPGDALQYIYELPPDHYPG
IFYYHPHFDGSSSVQTLGGMSGAIIVEDPEGSLPPEVEAMREVVMVLQET
NIESGALRNYKAASEISGSKMPLYGKGEGGDGSKSDMLHFVTVNGQYQPV
VRAQPGEALRLRVVHGGNNDHMHVSLVPAAAAGLQRDDTKEPGQKEKEAA
EAGGAGGAPAASSDIDMNSCKLLTLARDGVYLSAPRLQGGGDGRVVLAPG
SRADLAVRCDGPGAYRLVSSKGGAAGRGGGEEDGDEESIMAYLGKNTDVF
EGTLAFLDVGGDQMDMELPTKSPTAMGENRLLQDLQQLPDNEVSRFVFEF
NAAEKVSHLGQTYTWYGINGIQYNASQVVRRVPLGSVEEWVIVNQRKGRG
ERVEACHPSSSSSSPLPTTTTTTTTATELREPIDSRGDVGSSASGSDGAA
GAAANGEGQHRSRWRRRGLGSQLSKGPEVESGPSGGAVELAEDEGEGGGA
RVACERTDPGEVTYDGHPFHLHANHFQGAGPGEVTYDGHPFHLHVNHFQV
VSSSWGDEGPDWNVGDWRDTISIPAPGNVTIRWSADDFTGEAVAHCHIFG
HSDTGMMMNFEIFEKL*
back to top

mRNA from alignment at C-linearis_contig102:238657..253860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.781.1 ID=mRNA_C-linearis_contig102.781.1|Name=mRNA_C-linearis_contig102.781.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15204bp|location=Sequence derived from alignment at C-linearis_contig102:238657..253860+ (Chordaria linearis ClinC8C monoicous)
CGTACGAGACAGTACATGGTGGTGATGCTGCTGCTCATCCCAGAATCTCG
CCTTCAGTTGGGTGAGCCGTTCATGTGTGACATGTTCACTGTACTGACGC
TCTACGCGTAGGTGCACTCCATCCGTCTACGTAGTTGGACGCGTTCCGTA
CCAAGTGCACCAATGAGCTTTTGGCTGATGAATATCTCACAAACGTCAAT
ATCCATGGATTGTGAACGATCCTTGCTAACTATGTTGTGAAGGCAGCAAC
CAACACTTGTCTTTTATCTTGGCTTGCACGGCAGACCCACGTTGAGAGAG
GATTTGTCGACGTTTGGGACTAAATAAAGTCTATTCCTTCTTGACTCTGT
TATCCAGCTCCTACTATCTCAGTCCAAACAGCAGTAGCAAGTGTTTCGCT
GTTGCGGTGAACGAGCGGTGGCTAAACTAGAACATGTCACGATGACGGGT
TAAGTCTGCCGGGTAGATACGTTGCTGTGGAGTTTATTTGTTGGTCGGGA
AGGAGGGGAGTGAGAGTCGAGGGCGCTCATCCGTCTTCCATTTCTACGGG
CTACGATGCCTGTGTTCCTTGTGTTCCTAGCTCTGAACCATAATTGGCTC
CAAAAGAAGGAACCTTTCTTTGGGAACCAGACATATTCTTGACTGAACTC
ACCCTGGCTTCATGCTGGAACCGAACTAGCTCTATAACCCTTCTGTACTG
AACACGAACTGGCTTTCTATAGACCGACTACGTTGCAACGTGATAGTGCG
TTCTGTAAGCTGATGTTTACTGCTGTGTTCAGCACCGCCGGGGGCAAGTA
CGATGACCAGGGGACGCTCGGAAGTTGTCGCCGGGCTTTCTGTCAAAATG
TCATTGATCATATTGGGAGAGCGCGCGCACGCTTTTCCGGGCGTGCGATC
AGGGCGAAGGGAAAGACGGCGGTGACACTGACCTTAGCGATTGCAGCACT
TTGGGGTCTGTCAACCCTCGTCGTCTTCGATGTACGTTCGAACACTTCTG
CTGGTGGTGGTGCTATCGAGCCAGCTGGATGGCAGGACCGCCAGGTAGTC
TATTTATTTTGTGATGCGCGCCTTTCTCTCTGACCGGCGAATTTTCAGTT
TTTTTCTCTGGTGCACATCCGCATGGTTGAATGATGTCAACTACAGGCCG
GTCGCCCCGGTGGACTAGTGGTTTAACCTCGAACTCACTAGCAGCAAAGT
CTGGAGTTCAATTCCAAGCAAATGTGATTATTTTGCGACTTTGCAGGTGA
AAGCGATAACATAGTAGCTGAAAAAGCTCGTGAGTACCAAACTTCGACTT
AGCAGCACGTTGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAA
ATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACATAAA
AAGAAGAAAAAAGCCCCAGTGTTACCCCCTCCTGTGTGACCCCGGTTTGT
TCTAGTTGTACAGAAAAATGCATTGAACAAGTGTAGTACTCTAAATACAC
CGCAACGTGTAGTACAAGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAA
AATAAATGGGACGAAAACACACACACACACACACACACACACACAGGCGT
GAGGGTCGGAAACTCGCCGACTCGCCGACTCGCCCCTTGCCTTCGCCGAT
GCCCGCAGCACCATAGTTGTGTCTTGCAAAATCTAAATTTCGCAAATTTC
GCAGCTCCCACTTGATACCTAGAGAAAACATTCCTTCACGAGATAGGTTC
CAGAGACCATATTTCTTGCGCTTGCATGAGATGGGATGCTCAACACAAGA
CCCTCCCTTTTCGCGTGCTTAAATCGCTTCCCACTGCACTCCCACCCTCT
GCCGGCCAGCCGCTTGACGGCGAAGCCCTGACGGCCTTCTCCCGAGACCT
CACGTCTCCGGAGAACCGGTGGTCCAAGGATGGCGAGCTCCGAACCACCC
TCCGAGTCGCTCCCGCCGTGACGCAAGCCGGCCCACTAGCGCCGTCGCTC
AACGTCCGGGCGTACGAGGAATCGGTGCCAGGCCCTACCCTCAGGGTCAA
GCCCGGCGATCGGCTTTTTGTGAACTTGGTAAATGATTTGGATCTGCCCG
AGGGCGACCCTTCGGTGGCCGGGGCTGGGGAGGACGGAGAGGGAGATGGT
GGTATCGACCGGGCGTCTCTGGAGGGCAAGGTGGAGGCGTGGCCGAACGT
TACGAACATCCATGTGCACGGGCTGCACGTGTCTCCGTCCGGGGTCGGCG
ATAACATCTATCGGTGAGACTTCGCAAAGTGGAGGTTTGTCGTCATCGCC
GTTGCTGTCTATATTGCCTTCATTTTATCATTTTACGACTCCACCTTGAA
CACGATGACCGCGTGTGTCAGTTGGAGCGAGGGACCGTATTTGTTCCTGG
CTGCGCCGCGTCCGATTTTCGAGCGCTTTTGGTGCGACTACCCCACTCTA
CATACTTCGGGAGTGCATTTTTTTTTTGTGTTAGGCTTGTGCCTATGCTG
TCTTATCGCCGGCAGCAGGGGCCCGGCGGGGTGGCGGCCCAGGCGTGCGG
TGCCAACGCTGTGCGCTTTTTTCTCCCCATCAGCGAAGGTGTTCCTTTGC
CCTTTCTTCGGCTTTCTGCACCTTAGCTTCGCGTGCTCGCTGCTGCGGCT
GCCGTTGCCGCTGCGTCCGGCTCTGTGTTCTTTGTTTTCGCAGGCGAGCG
GGCCCTGGGGACGCCTTGCAGTACATCTACGAACTCCCGCCCGACCACTA
TCCAGGGATCTTTTACTACCACCCACACTTCGGTGCGACTATCCCGCGCA
ACCTTGGCTCTTTAATATTTTCTCTTCTCCTCCCTCCTCGTTTTTTGTGT
CGTTTATCCTAGTACTTCAAGTATTGTCTAGTTTTTTCAAGATGTTTGTG
AAAGGAATCATCTCTCCCTACCCTCTCTCAGTCCGCTCGCTTGGGAATAG
GCTAATCTCTTTTTCTCTCCCGTTTTTGGTCTTGCGGCTTTGCCTTGATG
TCGCTTCGATTCCTCGTGGGTAGGGATATTTGCTGAGCACGTAATTCTTT
GCCTTGATTAAAAAGCATGCCGATTTAGGGACGTGCTTTCCTTGAGCAGG
CACATTTTGACACACAAACGCGGGTGCATCTCTTAGAACTGGACTTCATC
GACATGACGTGATCATACGAACGGTTGGGCGGTCTTCTCTGCGAGCGATA
CAAGCGTATCTCTGGCCTTCCCCCGGTTTCACCGTCCTGCTACTTGCTAT
CCCACCTCCCCCCGAACACGTTCATGCTCTGTTCCTCGGGTGAGCGCAGA
TGGCTCAAGCTCCGTCCAGACTTTGGGCGGCATGTCGGGAGCGATCATCG
TAGAGGATCCGGAAGGGAGCCTCCCGCCAGAGGTCGAGGCTATGAGGGAA
GTGGTTATGGTGCTGCAGGAGACCAACATCGAGTCAGGTGAGGAGGAGAC
AGACAGCTTTTCTTTGTCCAATAGAGGAGGCTGCTAGGCAGTACAGCAGA
AGTACAAGAAGTAAGACAGGTTGCGCACCTAGCTAACGAAGTCAACATGG
GCTTGAGAAAGGAGGTGGATATCCGTTTGGACGCCCATTGGTACCTGCTT
TCTGCGCGTTTCAGCGCTTCGCGAATCGCAACCATGAACGATTGGTGAAT
ACTGGCGAAATGACTGTGTGAAAGCATGGTTTCGCGATTTTTCTATATGG
AAGATTAGGTTAAGGGAGCTCAACATGCCAAGAAGGAAAATGATACTACA
CCAATAGCCTACACCATCATTAGTAGTCTACGCCAGTAGGTTCGTTCGGA
GGGGGAAAGGTGGGCATATGTTCGTACCCTCGTGGCACGGAATTAGCGTA
GGAAGGGTCCCACTCTGTCGGTGGCTTCTCTATCAGGAGTAGCTCCGGCC
CGATTCGTGTGCGTGTACAGTGATAAAAAAAACTAAGGCGAGCGAAAAGC
GTGACGCCCCAACCTTCCCGCTTCCCGACCTCCCGCGCGCACGCGTCATG
CACACACGCAGGTGCCCTTCGAAATTATAAAGCGGCCTCCGAGATCTCCG
GCAGCAAGATGCCGCTGTACGGCAAGGGGGAGGGAGGAGACGGCTCGAAG
AGCGACATGCTGCACTTCGTCACGGTGAACGGGCAGTACCAGCCGGTGGT
TCGGGCGCAGCCCGGGGAGGCGCTCCGCCTGCGGGTTGTCCACGGCGGAA
ATAACGACCACATGCACGTGTCGCTCGTCCCGGCCGCGGCCGCTGGCTTG
CAGAGAGACGACACCAAAGAACCAGGCCAGAAAGAGAAAGAAGCTGCCGA
GGCCGGTGGGGCGGGGGGCGCGCCAGCCGCGAGCTCAGATATCGACATGA
ACAGCTGCAAGCTGCTCACGCTGGCGAGAGACGGGGTCTACCTCTCTGCC
CCGAGGCTGCAGGGAGGCGGGGACGGGCGAGTTGTGCTCGCCCCGGGGTC
CCGTGCGGACTTGGCGGTGCGCTGCGACGGACCGGGGGCGTATCGGCTCG
TGTCTTCTAAGGGCGGGGCTGCCGGAAGGGGAGGGGGGGAAGAGGATGGA
GATGAGGAGTCGATCATGGCGTATCTCGGTAAAAATACCGACGTGTTCGA
AGGTGAGTCTGGTTACAGAGATTGGTTGATGCGGTGGCTGTGGGTGCGAT
TTGCCCATTGTGGGTTTTGTGAGAGGGAGTTTGCCCCCCTGCCTGGAACT
TGGTGGCGAGTTCAAATATTTTGATTTTTTTGCAGGCTCTCTTTGGCGGG
GGTGCGCCCATTTGTTTTTCTCCCCCTATGTAGGGTGTTGCTCCGCCAAC
TCTACGGCGCCGTGTGACGGTTGTCGCTTCTGTAGTGGTGTAGTGGGGCT
GCTTCTTGGAAGCGTACCAAAACCCATGAAAAATGATATTGCGCTGTCGT
GGGGAACACGCAAACAGACGTGTGCTGAAGGTTGTCAGCCCCGCAGTACA
TCGTTTTGCTCGTTTGCTTTCGATTTTGGATATATTATTTTTCGAACCTC
CTTTTGCTCGCCAAAGGGGGGGGAGACAGGTGGAAACCCGGGCCACACAA
AACACACGCCCCGGTCTTCCCCACCACCAACAGTAGACGCACCACCAGCC
AAACCACCAGGCAGAAAGGTAAAAACTCTGCCTGCCCCCACCCGTGCTAG
CGTATACTGAACAAGAGAGAAAAGCCTACAATAATAAAATAGGCTTAACA
CCGCCCGATATGGAGACCCGAACTGCCATACCGCTGCCAGGACTTGATAT
TCTCTCAACTTACTGCTCCCTTCCTAGCGCCCTGTACATTACGTAAACGG
ACATGCATCCCGCATGACATAAATAGAAGCATATATATACAGAAAACGAC
GCTGACGAATGAATTGCCCCACCAACGCTGAAGAAACACGACAACATCAA
CATCGCGAATCGAACACTGCCGTCGCGACTCGGTTTCAACACACACACTC
ACTGGCAAATCAGACGTACGCCACCACTGAAATGCAACACAATTCCCGAA
AGACGCGGCCTTGACAGCCCCACACCGACGTCTCCGCCCGCGGAAATTAC
TAGCAAATCATAACAACTCGAGCCCACAGAGACCGCACCCATGGCACGCG
CGGTCTCGGACGCGGCAGACGCGTGTGAAACACCAGTCACAACGCAAAAC
GACACGGCCGCCGCTCCTCGCCTCCCGATCACTGACACCCCCAAAAGCAG
GGTGGGTGGGTGGGAAATAAAGAGCGGCACCCAGAAGATATCTGTCGGCC
ACCCCACGTACACTCGCTCACACCAGCAGATCACAACCGAGCGTGATCGC
AACCAAGCGAGTGATTGAAGGAAGTCAGGGACCACCGCCCCAATCGTATC
CTGCCTTCTGATTGGCCAACTTTATCTGCTGCCGCAACTCACAAAACACA
GATTCCATTCCTTCGTCACTCAATCTTTCGCTTTGCTCATTTGCTTTCGA
ATTTGGGTATATTATTTTTCGAACCCCCTTTTGCTCGCCAAAGGGGGGGG
GGACAGGTGGAAACCGGGGCCACACAAAACACACGCTCCGGTCTTCCCCA
CCACCAACAGTAGACGCACCACCTGCCAAACCACCAGGCAGAAAGGTAAA
AACTCTGCCTGCCCCCAACAACGAGGCTGATGTGTCATACTGCCCCCCCC
CCCCCCCTTTTTTTTTTTTTTCTCAAGAGCCAACTATTTACATCCCATGC
ATCCCCCAAAGACACACTCCCCTACGATTCACGTCGCACGAGAACTCGTC
TATAAGCCAAAATGCCTCATATCTCGCGTTGCCGAACTTTCGAGAAAGAC
CCCGGCACGCACCATCGCAGATTCGATGATGCCTCCTACAAACGCATCAC
ACTTCACCCCATTGCGTCCCTTGCCCCGGTTGCGTAACGGCCTCGGCATT
TTCTAGTGCCTTCGACACCCATCCCGTGTCGCCCCCAACGTTACGCACGT
AGCATTGGTAACTGCTCTCCCCTGCCCAGCGCCCCTCCCTACGAAGGACC
TCGGGCGATGCCCCCCCCGCAGCCAAGTACGTTGCGCCCCCAATCCGAAG
GGGGTACAGCGCGTACTCTGCGGGCTGCAATCCTGCCAACGCAACAACTT
GGCGTAGCGCGGGAGTTGCTTGGTGCTTGGTCCACATGGCCCACTTTCCA
TTACCAACACCAAATGCGACTAGCGGTGCGTGCGGGGGCAGAAATGTGTA
CAGAGACAACAACTCTACCATGACATCAACGGCGCCGCCCCCACTCGCTA
CCCCCAGACATGGGCCCAGACGCGTACGTGTGCACACTGCTCCCTTCCGA
AAATGGTCCCCTTTCGAAGACCGAAATCGCACCTCAACCCGATCGGCCAA
CGGCCAACTCGCCGATGACAACAACTGCTCTGCCCCCCGGAAGAACGCGA
CGTCTCCCCGACGCAACCCATGAACCTCATGCATAAACAATTTCGACACA
GCGAACATCTCGGAGGCCCGTGCTGAAAAGAAAAAGGAAGCACTCAGCGC
CAAAAACATAATACGTCCGCCTACCCCCCATTGCGGTACCAAGGAAACGC
CCCCTTTTAAGACAGCCCACGACACCGGCCTTCGCAGCCGTTGCTGCGTC
CCCACACCCGCGTGTCCGCGCGCCGACCCTCGGAGAGCGCACATCACTCG
TGGATGACGCGTATCAAGCTCTCCTGCACCGGACAGACGGTGAAAAAACT
TGACGGCGGAGAGGTGACTTGCGATGGTCGATTGCTGCAAACCCAAAACG
GAAAAGGCAAACGCGACAAACTCGACCAGCTCATCTGAAACGTCAATACA
TTCGGACGGCCGGGACAGAAGCACCGGCCGACGCACCACGGCAACGCGAA
ACTTCACCCAGCCTCGAAATAGGCCCAGGTAAGTTCTTTCAGACGTTGCC
GCAAGAGAGCAGCGGACGAGGCCGTCCCCAACACGGCGGGGAGCACATCT
CTTGCCCGGCCGGGTTCAACTCCACTTCCTGCCAGCGTATGTTAGGGGCG
GCCGCGCAAAGGTTGGCGTGAACGTCACTGCGAGGCCAACGAGAGATACC
GTCAGCGAGGGAATTGAGCACACCGGGCACATGCGAGGATTGAAACAGCC
AACCGCTGGACACTTCAATCACCCCCAACATGCGCATGAGTGCTCCCGAT
CGAGGATCTTTGCCCCCTCGGCATCTCTTGATCCATGCCACACTTGGCTC
GTTGTCACCCCGCAGCTGAACACAATCACCCGCTTGTGACGGCCCGCGCC
GCTTGCTGCGTGATCAAGGCCCACGCACCAGCCACCATGCCTAGGAGTTC
AAGAGCGTTAATGCTAATGTCGTGAACACCTTCCACCGACTTGCTCGAAC
CCACAAACCGAGACTGCTCATCCGCCGTCAACTCGCGGCGGAAATATCGC
CCTGTCTGTACACAATATCCTCCGAACGAACGCGGTTTTAGACGCGTCCG
AAAAGACAGGCAGTTTTGTTATACATACATACATACATGGGGGGCGACGC
GCGATGTTATACATACATGGGTGTGCACAGCTGCCCTCCGCATGATGCTA
AACCTCGCGCAATAAACTAAACCACCGCCAGAACTCCAAATCGTCGTGGA
ACATCGGACCCAAAACCACACGCCGGTTAGGGTTGGAAACACGCGACGGG
AAGACTTCAGACTGCGGCATGCCCACCGCAGCCAGGAGACGACCCACAAA
GAACTTGCCCGGGCGCAGGGCAAACGATACGTGTATGAGAAAACCGGTAA
GCTGCGCAACTTGGCGAGCGGTCGCACTCGAGCGCTCCGGCGGCCACTCC
CTCAACACGCGGTCCAACTTCTGCTGTTTGTGCTCGGGCATAGAAACTGT
AAGCTGTTGTGTGTCAAGAATCCAACCGAGGACCTCTAACCGGGTAGAAA
GGTCGGTATTTTTTTTCTCTAGACAGCAACAGGGGGTCGTTTGGCCCCCG
AATCCCCAGCAAGCGGAAGTGATCCGATGCTATCGACTGCATGGCACGAA
TACAGCGGCGTCCATCCGAGAAAAACCGCGCCTCGACTAAAGCGCCGTCG
TCGACGTAGTATCGAATGAAAAACACAGAACCGGCGAAACCACCGTCCAT
GACAATCGTCGCACAGTCACGCAGCAGGGGAATTGCGGAGTGTGTTGGGG
GCACCAGGTTAACGTGGCTGACCGCATCCGCCCCGCTCGGCAAGACCGAA
GCTGTTTGAAAAGTGGTGTGCGTATGGGAATGTTCCAGTGCAGCAGCAAA
TAGGGACCAAAACTCCGGGGGCTAGAACGCCATCCAAACTGGCACCGGAG
GTCCACCACGACCATGTCACCCATGGTATCCAAACGCGGACGCGCGCGAC
AGGTTAATCAAAACTTGCCGGAACGCTTCGCTCACATCGATGCGACCGAG
AACGATTTCTAGATCGACCCCGTGCAATTGGCGCAGAAAGAGAATACGTG
TCAAAATATCGTGGAGAACGTGTCCGAGCATGCATTCCGGCGCCCTATCG
AAGTCGGTGTCCGCATTGACACTGGACCTAGGCCGCGCCCCGGCTGCAAA
AGTCAGGTCGAGGATAATACGGAACTTGGGTTCTTCCACTACCCCGACGG
GAGAAACACGCACTCCCAAAATGTCCCGGATGAACCTACAGCAGTAACGT
CAAAAACCAACGCTCGACCCAAAACCACATCTGAAATGATCTTGTCCGCA
ATCTGAGGCATGTGCTGCTGTACACTTGGATGATTGCCTTTTGCCAACTC
GTCCTCCAAGCACCCACCCGCCGCCACATCGACGGGTGCGCCCGGACACA
ATACGCCGAGGAGTTGTTGTATGCGAGGAAATTGTTTTGGTGACCGAAAT
ACGCGAGAACCCGCTGTACATCCACATGCGGAGAAAACAACTGCGGACCA
CCTGCCGCGACGAGCGTTTCGATACGCCCGCCACACTGTCGAAGCAAGGC
GGAACTAGCCGCCGCCACCACGCTAAGACACGCACCCGCCATCGAGGATG
AACACGAGTCCGTTAACGCAGCCATACATGACTGCCATACTTGAAGTTCG
CACGAACTCGCAACAGCAGTAGAGAATGCACCATCTTGCGCAACATCACT
CGCTCACTCATCACCTGGTGTTAAAGATGAGACAGCCCGGGGCACCCAAG
CCCCCCTCTCGCGGCTGACGCCCGCTGACGCCAGCGCCTCGGCCCCTAGC
CTCTTCAGGCCTGAACGAGCTGTCACTCCCGCGGCACCTCGCGGCTCCGG
AGTTGGCCCTGCCGAAAGGCAGAGCCCGTGTCCTGAGGTGTGCCCCCCCC
GCAAGACCAACGCCGAAGAGCTACCGTCGGCAGGCGCCGAGCTTGCCGAA
CTCCCGCCCCCACCGCTCGCGCCGCCCCCCCCGTTCCCTCCGCGCCGGCC
GCCACCCCTTCCGTCACCGCCAGCGGCGGATCCGCTGATGTGGTCAAACT
TGCAATTGGCGCCGTAGCTGCAATTGCCCGTGTTGTAAAAATTGTGCCAC
GAGCCGGGCGGGTACCGCGGCGTGTTCTGCCGCTTTGCCCCACCGGCAGC
AGACGATCCGGCACGCCGCTTCTGCCCGGTGATAGCACCGCCGCCGCGGC
TGCGAGAGAACATGCGGATGAGGCTACTGCCCGACGTGGCAAAGTTAGTG
ATGCCAGGGAAATCCGGCACGGGGAGGGGGCCAAACGCTTCGAACGACGT
CGGAGCAATCGACAATTGTGACACGGGAAGAGCCCGTCACGAGCGAGGTG
GTAAAAAGCCGCAAATCGTCGTTGGGTAGGTCGGCGAGGACGGCACGCGC
CGACGGCTCGTTGAAATCGGCGTGGTGTCTAAGCATCAGCATACGGAATG
TGGCCCGCGCTTTAAGCATCGCTTGCTCGATGGGCTGCAGCCGCGCGATT
GAAACGACATCCGCCGGCTTTTCCGCCTGCAGTCCAAACTTCAACACCCG
AACTATGGCATCGCATGTGATATCGAAGTGGTCGGCAACCGCTAGCTACG
AAGCCGTCCGGGGCGAAGTCCAGCACGTTGAAGCCGGACATAGCCCGCAG
CTGCTGTGAACGCGGTCGTTGCACACCTGACTACCCCGGACAGCACTGTC
GACAACATACCTGAAGCCGAGGTATCGATCCCCCGTTGGCCCCGCATGGC
CCACACCAGCCGACCTGACCGAAAAGCAGCGCCCTTGTTCTCCAAATCGG
CCTTCGCGGCCCGGCGGTCGTGTTCGGCACCAGACACGCCTGCCGACACC
CTGGGCACTGCGACGGGTCCGCCAGCTGCGGCAGCAGCGGCCACGGCGGC
TGCGGGGCCAACCGGCGGAGCCACCCCACCCTGGGCATTGATCAGCTGCT
GCAACATCGCCCGCAACTCGGACATTTGTTCGTGCATGTTGGTCGTATCT
TCCTTCAACTCGGCAAATGCAGACGCAGAAACAACGCCAGCACCCCCGAC
CGAAAATAAAGAACGGCACCCAGAAGATATCTGTCGGCCCCCCCACGTAC
ACTCGCTCACACCAGCAGATCACAACCGAGCGTGATCGCAACCAAGCGAG
TGATTGAAGGAAGTCAGGGACCACCGCCCCAATCGTATCCTGCCTTCTGA
TTGGCCAACTTTATCTGCTGCCGCAACTCACAAAACACAGATTCCATTCC
TTCGTCACTCAATCTTTCGCTTTTGATTTTGGGGAACACGTATTCCCACA
CACTTTGGGTTGCTAATGAATCCGACGACGTTCGATTTGTGCAACACAAA
CACAGGAACTTTGGCTTTCTTGGACGTTGGAGGGGACCAGATGGACATGG
AGCTGCCGACCAAGTCGCCGACCGCTATGGGGGAGAACCGGCTGCTTCAA
GACCTCCAACAGCTGCCAGACAACGAGGTGAGCCTACTTTTACCAAGATG
AAGCCGGGGGTCCCGTGCTATCTAGTTGCGTTGGTCGGGGGGGGGGGTTC
ACACGCAACTTATGCGGCGTGAGGTGGAGAGCTTGATTTTCCTCGTGTTC
CGTTTGGCATTCGGAAAAAAAATGGTACCTCAAGCAGCTAGGTTGGCGTC
TTGGTTTAGGGGGCAGTCTCCGGCTTACTTTCCGTTTGATGTGCTGAAAG
TTGTTAGCTGTGCCGTCGCCTGTCTAGCTGCTCGTGTTGTTGCTTCAAGC
GCCTCCCTCAACCGTGCTTTCTGCCTTCTCTTGGTCAACACAGCAGGTTA
TCCATGACATTCAGTCATCTGCACACAACATGCACACCAAGTATAGCTTT
TCTTTTCATGACCACTACTGCTGTTGCCAATAGCTACAGCAGTGGCCACA
GGCCTTTCGTCGTCACGCGAAGTAAGGCCTGTTTTCTGTCGTAGACACGC
TCAATTTCCGGGAAAATCAACCTTAGATTTGGCCTCGTGCGTGCATGATA
TCCTTTATTGTTTCCAATCGCTAATTTATCGTCCGTCACCACTCAGGTGT
CGCGCTTTGTGTTCGAGTTCAACGCCGCTGAAAAGGTCTCCCACCTCGGC
CAGACCTACACCTGGTACGGAATCAACGGCATCCAGTACAACGCCTCCCA
GGTCGTGCGCAGGCAAGAGCAACCTACGGCAGGACGAACCGAATTACAAC
TGGTTCGTCTCGGAGCTCGGCTAAATTGGACTTTCCCCCCTCGCTTACGC
GCGGGTAAATTCACACAAATTCGTTTTGATGAACTTGCACGTACCCATTC
TCATTGCCCTGCACAGCTTTCCCCCACCGGTTTTGTCGCGCAAATCCCCC
CATCCCCGATATCAATCTCGACGTTCTGCCCAGTTGATTCTTACCCGCAA
CCTTGAGGTTCCCAACCGAATTTCGCGGGTATGTATGTAGAAGTATGTAT
GTATGTATTGCACCTCCCGATTTTCGAAACTCTACTCTTTCACTGCCTTT
ACTCCATACAGGGTGCCACTTGGCTCGGTGGAAGAGTGGGTCATCGTCAA
CCAGAGAAAGGGGAGAGGGGAGAGGGTCGAAGCCTGTCACCCCTCGTCCT
CCTCCTCGTCACCCCTACCAACAACGACAACAACAACAACGACCGCGACT
GAACTCAGAGAGCCGATAGATTCCCGGGGCGATGTTGGCAGTAGCGCCAG
CGGCAGCGACGGCGCGGCAGGCGCTGCTGCTAACGGTGAAGGGCAGCACC
GCAGCAGATGGAGAAGAAGGGGGTTAGGGAGTCAGCTGTCGAAGGGGCCG
GAAGTGGAAAGCGGGCCTAGCGGAGGAGCTGTCGAGCTCGCAGAGGATGA
GGGAGAGGGGGGGGGAGCGCGAGTGGCGTGTGAGAGGACGGACCCCGGGG
AGGTCACCTACGATGGTCACCCGTTCCACCTGCACGCGAACCACTTCCAA
GGGGCGGGCCCCGGGGAGGTCACCTACGATGGTCACCCGTTCCACCTGCA
CGTCAACCACTTCCAGGTACCTAGTTTTCAGTTTCTGCTCGGTGTACAGC
GATGCAGGTCTTCTTATGCTGCCAAGGGGACGGGGGAGGTGACGGGAAAG
GGCGGGCTCTCTCCGTTTGATGGTTTCATGGTTTTGCGTTTGTTTTTTAG
CGTTGGTTTAGTCTTGACGAGACAAACCTTTGAGGGTCGGACCGGAACCG
CGCCCACCGTTTGTATCTACGCATCTTTGCGTGTGACTTTGTTTTCTTTC
TCGGCCGTGCGGCGGTCAAGACTAAGGCTAGTGATGTACTCGTTCGACCC
GAGCCGCGCGTCAACCGGTTGACGCAAGGGTAGCTATAACAAGTAGACCC
CGTTTTTCGTTGATGTTGTTGGTGTTCGAGAGCCAGTTCAATGAGGATTA
TGACCGTTGAGTGGCTGCTTCACCAGGTATAACCGGTACCCCCCACCCCC
CCCCCAACCGCGGGTGCCTTTCGATGACAGCGACAGTATAGCCCGGTCGA
CATCCATGGTTCGTACGAAGTGTCTGTTTTGTTTTCAACGCTGCCAGTAG
ACGGAGGTGGGCTGTGGTCGCCTATAGCAGGGAGAGAAAACCCTGCAGCG
AGTCACCCTCCCCCAAGAACAAGACCCCAATGGGAAGACAAGAGCGCTTT
TTAACCATCGAAGGGAAGCGAATCGAGACGAATTGCCGGCTGATAAAAAC
ATTTTCCTACACCCCGAACTTGCCCCCAAACGCAGACACAAGCCCGCCCT
CTATCTGGAGACCCCATCAGCCCCGACTGTAAATGTCCACCGCATGAATT
TGATGGGCTTGGTTCACGCAGGTGGTGAGCAGCAGCTGGGGAGACGAAGG
GCCGGATTGGAACGTGGGGGACTGGCGAGATACAATTTCGATACCTGCGC
CGGGGAACGTTACGATCCGTTGGAGTGCAGATGACTTTACTGGCGAGGGT
GAGAGAAATACTGCTTGTGTCGGGTTAGTATTTCTGACGCGCTTGCCACG
CTCTTTTCGCGCTAATTGAACTGGGCTGTCTACCTCGTGTACATCGAAGG
ATGAGGCTTCCTCTTGTCCCCTCCGACTGCTGTTCGTTGTATATAAGAAG
AAAATTGCATGCTCTCGCCAAACGCTTAGCCTCGTCTGAACGGTGCATCT
ACTTTGCCGCTCTCGATGTATTTTGCCTTTCACGCGCTGTTGACCGCCCC
CTTCTCCCCCGCTCCTTCCCCTCCCTCTCGGCCCGCTCTGATGTTTTTGC
TGCTTCTCTTTGCTGCCCGTGTGGCTTTCATGCAAACGCTTCACGGCGTC
TGGTGTTTTGTGGTGATTCAGCCGTCGCCCATTGCCACATTTTTGGGCAT
TCTGACACCGGGATGATGATGAACTTCGAGATTTTTGAAAAGCTTTGATG
CATCGTATACGAAGGATGCGTGCACCCCGTATGACGCGTTCTTGCTCGCC
ACGGGTATCGTAGCCCTGTTGTCTCGACGAGGTCGTTGGATTTGATGTCC
TCAGGGAAGAAGTTCACACCGCGGGGACCATACCCGCTAAAGCGTTCGAT
GACGTCGAAGACCTCTGACGATGTGCCCGGACTTTCTGTAGCGGGAAGCA
TTTGGAGTTGAAAGCCGGAACCCAAACAGAGGGGAAGCACGAGGGATGTG
TGTAGTCAAAAACGATTGTTGAACAACCGTTTGGATCAGGTACAGAGATC
ATATATCAGAGGGCAGCCCGCAATGATGAGGATGCTGTCATCATTCAAAA
TCAGTCACCCACGGCGAATTTGATTTTTTTAATTTTTTGTAAATTGTTTG
TGGCCGACTTCTGTCTTAAAAAAAAAACAAGGGGGTTAAACTGAGGCCCG
GTAGGTAGCCTGGTTCTACCGATAACGTGACTGGTTGAAAACGCATGGAA
TCTGGCGTAGACTACTGCAGAGCAACGGCGGCTGTCGACACGACAAACGG
TGGAATCAACACTTGACCAAAGAAATGTGCTGGGGCAAAGGCTTGCCCAA
CAGAGTGCCTTCAAAAACGTTTCCTCTACATACCACGCCTACAGTATTGG
TTGTGGTCGTTTGGTTGTACTTTAGATTAAGCAAGATATATTGCTGTAGA
TAGTTGTGTCTCTGTCTTATTGGAAAAACAGCGGGGCGGGCACTGCTTGG
AAAATTACTCTTGGGCAAGATTGCCAACGAACGCATAGAGTGAGTGGTAA
ACCTCAGGCTTGATTGGAGGGACCATGAGGCACCACGCCAATTGAGACCG
GTTGTTTTTTGGACAACACGTTTCGTGTGCCGCGTCCGACCATCATATGC
TACG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig102:238657..253860+

>mRNA_C-linearis_contig102.781.1 ID=mRNA_C-linearis_contig102.781.1|Name=mRNA_C-linearis_contig102.781.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4902bp|location=Sequence derived from alignment at C-linearis_contig102:238657..253860+ (Chordaria linearis ClinC8C monoicous)
ATGTTTACTGCTGTGTTCAGCACCGCCGGGGGCAAGTACGATGACCAGGG
GACGCTCGGAAGTTGTCGCCGGGCTTTCTGTCAAAATGTCATTGATCATA
TTGGGAGAGCGCGCGCACGCTTTTCCGGGCGTGCGATCAGGGCGAAGGGA
AAGACGGCGGTGACACTGACCTTAGCGATTGCAGCACTTTGGGGTCTGTC
AACCCTCGTCGTCTTCGATGTACGTTCGAACACTTCTGCTGGTGGTGGTG
CTATCGAGCCAGCTGGATGGCAGGACCGCCAGATGTTTACTGCTGTGTTC
AGCACCGCCGGGGGCAAGTACGATGACCAGGGGACGCTCGGAAGTTGTCG
CCGGGCTTTCTGTCAAAATGTCATTGATCATATTGGGAGAGCGCGCGCAC
GCTTTTCCGGGCGTGCGATCAGGGCGAAGGGAAAGACGGCGGTGACACTG
ACCTTAGCGATTGCAGCACTTTGGGGTCTGTCAACCCTCGTCGTCTTCGA
TGTACGTTCGAACACTTCTGCTGGTGGTGGTGCTATCGAGCCAGCTGGAT
GGCAGGACCGCCAGCCGCTTGACGGCGAAGCCCTGACGGCCTTCTCCCGA
GACCTCACGTCTCCGGAGAACCGGTGGTCCAAGGATGGCGAGCTCCGAAC
CACCCTCCGAGTCGCTCCCGCCGTGACGCAAGCCGGCCCACTAGCGCCGT
CGCTCAACGTCCGGGCGTACGAGGAATCGGTGCCAGGCCCTACCCTCAGG
GTCAAGCCCGGCGATCGGCTTTTTGTGAACTTGGTAAATGATTTGGATCT
GCCCGAGGGCGACCCTTCGGTGGCCGGGGCTGGGGAGGACGGAGAGGGAG
ATGGTGGTATCGACCGGGCGTCTCTGGAGGGCAAGGTGGAGGCGTGGCCG
AACGTTACGAACATCCATGTGCACGGGCTGCACGTGTCTCCGTCCGGGGT
CGGCGATAACATCTATCGCCGCTTGACGGCGAAGCCCTGACGGCCTTCTC
CCGAGACCTCACGTCTCCGGAGAACCGGTGGTCCAAGGATGGCGAGCTCC
GAACCACCCTCCGAGTCGCTCCCGCCGTGACGCAAGCCGGCCCACTAGCG
CCGTCGCTCAACGTCCGGGCGTACGAGGAATCGGTGCCAGGCCCTACCCT
CAGGGTCAAGCCCGGCGATCGGCTTTTTGTGAACTTGGTAAATGATTTGG
ATCTGCCCGAGGGCGACCCTTCGGTGGCCGGGGCTGGGGAGGACGGAGAG
GGAGATGGTGGTATCGACCGGGCGTCTCTGGAGGGCAAGGTGGAGGCGTG
GCCGAACGTTACGAACATCCATGTGCACGGGCTGCACGTGTCTCCGTCCG
GGGTCGGCGATAACATCTATCGGCGAGCGGGCCCTGGGGACGCCTTGCAG
TACATCTACGAACTCCCGCCCGACCACTATCCAGGGATCTTTTACTACCA
CCCACACTTCGGCGAGCGGGCCCTGGGGACGCCTTGCAGTACATCTACGA
ACTCCCGCCCGACCACTATCCAGGGATCTTTTACTACCACCCACACTTCG
ATGGCTCAAGCTCCGTCCAGACTTTGGGCGGCATGTCGGGAGCGATCATC
GTAGAGGATCCGGAAGGGAGCCTCCCGCCAGAGGTCGAGGCTATGAGGGA
AGTGGTTATGGTGCTGCAGGAGACCAACATCGAGTCAGATGGCTCAAGCT
CCGTCCAGACTTTGGGCGGCATGTCGGGAGCGATCATCGTAGAGGATCCG
GAAGGGAGCCTCCCGCCAGAGGTCGAGGCTATGAGGGAAGTGGTTATGGT
GCTGCAGGAGACCAACATCGAGTCAGGTGCCCTTCGAAATTATAAAGCGG
CCTCCGAGATCTCCGGCAGCAAGATGCCGCTGTACGGCAAGGGGGAGGGA
GGAGACGGCTCGAAGAGCGACATGCTGCACTTCGTCACGGTGAACGGGCA
GTACCAGCCGGTGGTTCGGGCGCAGCCCGGGGAGGCGCTCCGCCTGCGGG
TTGTCCACGGCGGAAATAACGACCACATGCACGTGTCGCTCGTCCCGGCC
GCGGCCGCTGGCTTGCAGAGAGACGACACCAAAGAACCAGGCCAGAAAGA
GAAAGAAGCTGCCGAGGCCGGTGGGGCGGGGGGCGCGCCAGCCGCGAGCT
CAGATATCGACATGAACAGCTGCAAGCTGCTCACGCTGGCGAGAGACGGG
GTCTACCTCTCTGCCCCGAGGCTGCAGGGAGGCGGGGACGGGCGAGTTGT
GCTCGCCCCGGGGTCCCGTGCGGACTTGGCGGTGCGCTGCGACGGACCGG
GGGCGTATCGGCTCGTGTCTTCTAAGGGCGGGGCTGCCGGAAGGGGAGGG
GGGGAAGAGGATGGAGATGAGGAGTCGATCATGGCGTATCTCGGTAAAAA
TACCGACGTGTTCGAAGGTGCCCTTCGAAATTATAAAGCGGCCTCCGAGA
TCTCCGGCAGCAAGATGCCGCTGTACGGCAAGGGGGAGGGAGGAGACGGC
TCGAAGAGCGACATGCTGCACTTCGTCACGGTGAACGGGCAGTACCAGCC
GGTGGTTCGGGCGCAGCCCGGGGAGGCGCTCCGCCTGCGGGTTGTCCACG
GCGGAAATAACGACCACATGCACGTGTCGCTCGTCCCGGCCGCGGCCGCT
GGCTTGCAGAGAGACGACACCAAAGAACCAGGCCAGAAAGAGAAAGAAGC
TGCCGAGGCCGGTGGGGCGGGGGGCGCGCCAGCCGCGAGCTCAGATATCG
ACATGAACAGCTGCAAGCTGCTCACGCTGGCGAGAGACGGGGTCTACCTC
TCTGCCCCGAGGCTGCAGGGAGGCGGGGACGGGCGAGTTGTGCTCGCCCC
GGGGTCCCGTGCGGACTTGGCGGTGCGCTGCGACGGACCGGGGGCGTATC
GGCTCGTGTCTTCTAAGGGCGGGGCTGCCGGAAGGGGAGGGGGGGAAGAG
GATGGAGATGAGGAGTCGATCATGGCGTATCTCGGTAAAAATACCGACGT
GTTCGAAGGAACTTTGGCTTTCTTGGACGTTGGAGGGGACCAGATGGACA
TGGAGCTGCCGACCAAGTCGCCGACCGCTATGGGGGAGAACCGGCTGCTT
CAAGACCTCCAACAGCTGCCAGACAACGAGGAACTTTGGCTTTCTTGGAC
GTTGGAGGGGACCAGATGGACATGGAGCTGCCGACCAAGTCGCCGACCGC
TATGGGGGAGAACCGGCTGCTTCAAGACCTCCAACAGCTGCCAGACAACG
AGGTGTCGCGCTTTGTGTTCGAGTTCAACGCCGCTGAAAAGGTCTCCCAC
CTCGGCCAGACCTACACCTGGTACGGAATCAACGGCATCCAGTACAACGC
CTCCCAGGTCGTGCGCAGGTGTCGCGCTTTGTGTTCGAGTTCAACGCCGC
TGAAAAGGTCTCCCACCTCGGCCAGACCTACACCTGGTACGGAATCAACG
GCATCCAGTACAACGCCTCCCAGGTCGTGCGCAGGGTGCCACTTGGCTCG
GTGGAAGAGTGGGTCATCGTCAACCAGAGAAAGGGGAGAGGGGAGAGGGT
CGAAGCCTGTCACCCCTCGTCCTCCTCCTCGTCACCCCTACCAACAACGA
CAACAACAACAACGACCGCGACTGAACTCAGAGAGCCGATAGATTCCCGG
GGCGATGTTGGCAGTAGCGCCAGCGGCAGCGACGGCGCGGCAGGCGCTGC
TGCTAACGGTGAAGGGCAGCACCGCAGCAGATGGAGAAGAAGGGGGTTAG
GGAGTCAGCTGTCGAAGGGGCCGGAAGTGGAAAGCGGGCCTAGCGGAGGA
GCTGTCGAGCTCGCAGAGGATGAGGGAGAGGGGGGGGGAGCGCGAGTGGC
GTGTGAGAGGACGGACCCCGGGGAGGTCACCTACGATGGTCACCCGTTCC
ACCTGCACGCGAACCACTTCCAAGGGGCGGGCCCCGGGGAGGTCACCTAC
GATGGTCACCCGTTCCACCTGCACGTCAACCACTTCCAGGGTGCCACTTG
GCTCGGTGGAAGAGTGGGTCATCGTCAACCAGAGAAAGGGGAGAGGGGAG
AGGGTCGAAGCCTGTCACCCCTCGTCCTCCTCCTCGTCACCCCTACCAAC
AACGACAACAACAACAACGACCGCGACTGAACTCAGAGAGCCGATAGATT
CCCGGGGCGATGTTGGCAGTAGCGCCAGCGGCAGCGACGGCGCGGCAGGC
GCTGCTGCTAACGGTGAAGGGCAGCACCGCAGCAGATGGAGAAGAAGGGG
GTTAGGGAGTCAGCTGTCGAAGGGGCCGGAAGTGGAAAGCGGGCCTAGCG
GAGGAGCTGTCGAGCTCGCAGAGGATGAGGGAGAGGGGGGGGGAGCGCGA
GTGGCGTGTGAGAGGACGGACCCCGGGGAGGTCACCTACGATGGTCACCC
GTTCCACCTGCACGCGAACCACTTCCAAGGGGCGGGCCCCGGGGAGGTCA
CCTACGATGGTCACCCGTTCCACCTGCACGTCAACCACTTCCAGGTGGTG
AGCAGCAGCTGGGGAGACGAAGGGCCGGATTGGAACGTGGGGGACTGGCG
AGATACAATTTCGATACCTGCGCCGGGGAACGTTACGATCCGTTGGAGTG
CAGATGACTTTACTGGCGAGGGTGGTGAGCAGCAGCTGGGGAGACGAAGG
GCCGGATTGGAACGTGGGGGACTGGCGAGATACAATTTCGATACCTGCGC
CGGGGAACGTTACGATCCGTTGGAGTGCAGATGACTTTACTGGCGAGGCC
GTCGCCCATTGCCACATTTTTGGGCATTCTGACACCGGGATGATGATGAA
CTTCGAGATTTTTGAAAAGCTTTGACCGTCGCCCATTGCCACATTTTTGG
GCATTCTGACACCGGGATGATGATGAACTTCGAGATTTTTGAAAAGCTTT
GA
back to top