mRNA_C-linearis_contig102.810.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.810.1
Unique NamemRNA_C-linearis_contig102.810.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.150e-22
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    4 GRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKP 234
            GR+HFY+AA+APD +TCE+HL KI++LN  A +K+ +  R  WA++ATRGNVV DQV SNM+ES NHA+G +    P
Sbjct:  311 GRMHFYQAARAPDKATCEFHLNKIKDLNTAAYEKVASASREKWAVYATRGNVVRDQVNSNMAESLNHALGPDVLPAP 387
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BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.780e-22
Identity = 49/89 (55.06%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSAAKVA 285
            Y+AA+A D +TCE ++ KI  LNP AGK +   PR  WAM+ATRGNVV DQVTSNMSE+ N+ MG +TR+K  LD   D   Q   K+A
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMMGPDTRSKAPLDFFMDTAFQGLDKLA 90
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BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.100e-17
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
            Y+AA+A D +TCE ++ KI  LNP AG+ +   PR  WAM+ATRGNVV DQVTSNMSE+ N+ +G +
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGEYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMIGPD 68
[Close]
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.050e-16
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   19 YKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAE 219
            Y+AA+A D +TCE ++ KI  LNP AGK +    R  WAM+ATRGNVV DQVTSNMSE+ N+ MG +
Sbjct:    2 YEAARATDKATCEANIDKIAALNPAAGKYIRLQTRHEWAMYATRGNVVQDQVTSNMSETANNMMGPD 68
[Close]
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.940e-15
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   64 LKKIEELNPVAGKKMGAVPRPTWAMHATRGNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSA 273
            + +++ LNP A KK+   P  TWA +A + NV+WDQ TSN SES N  +G ETR+K VL  + DIV+ +A
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIGEETRSKSVLGFMHDIVLLTA 70
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JAT0_9PHAE1.150e-2257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN60_9PHAE2.780e-2255.06SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KPK8_9PHAE8.100e-1756.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP9_9PHAE1.050e-1658.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA84_9PHAE1.940e-1548.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:584145..585011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.4995825-CDS-C-linearis_contig102:584144..5843631622927367.4995825-CDS-C-linearis_contig102:584144..584363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 584145..584363 +
1690879657.1164281-CDS-C-linearis_contig102:584144..5843631690879657.1164281-CDS-C-linearis_contig102:584144..584363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 584145..584363 +
1622927367.5143256-CDS-C-linearis_contig102:584944..5850101622927367.5143256-CDS-C-linearis_contig102:584944..585010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 584945..585010 +
1690879657.1294196-CDS-C-linearis_contig102:584944..5850101690879657.1294196-CDS-C-linearis_contig102:584944..585010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 584945..585010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.810.1prot_C-linearis_contig102.810.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 584145..585010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.810.1

>prot_C-linearis_contig102.810.1 ID=prot_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=95bp
DGRVHFYKAAKAPDASTCEYHLKKIEELNPVAGKKMGAVPRPTWAMHATR
GNVVWDQVTSNMSESTNHAMGAETRAKPVLDLVQDIVMQSAAKVA
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mRNA from alignment at C-linearis_contig102:584145..585011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)
GACGGGCGTGTGCACTTCTACAAGGCGGCGAAGGCGCCGGACGCGTCCAC
CTGCGAGTACCACCTGAAAAAGATCGAGGAGCTCAACCCGGTGGCAGGCA
AGAAGATGGGTGCTGTCCCCCGCCCGACCTGGGCGATGCACGCAACTCGT
GGTAACGTCGTGTGGGATCAGGTCACGTCCAACATGTCGGAGAGCACGAA
CCACGCCATGGGCGCGGAGGTAAGCTGTGCGTATGCACCTTGCGTATTTT
TTCGTGGCGTGGACATACATGGGCTTCGGGCTCCCATCCCACTATGCTTT
ACTGTTTTCATCACATAATTAAGTGACGTTTTATGTTGGGGGTTGATTGG
CATGTACCGTCAGTAGCTGTGATCTCCCGAATCCTCTTCTTTTCAAACAA
ATCCCGGGGGGACAAATTGCCCAAGTTGAAGTACCGGGTGGGGGGTAAGT
CTTCATGCTGCCGGGTCCAAAATGTGATGGACGGGGGAATGAAAGCAACG
GTTTACCGTAGACCCCGTGGCCGTGTTTTGTCTCCGCAGGAAATCAAGAC
CAACCCCAGCCTACTCGAAAGTCGCAATCGTTGGATTGAACGACGAACGC
GTGTGTAAGCACTCTCTCAGCACTGCACTGACTGCTGAGCTGTGCCCACC
CGGCACAAGTATCGTGACATGACGCCTCGCCGTGAGTTGTCCGATTTGTG
TAGACTTGTGGGATAGTGGGGTTTCACGGGGAAGTTTCCTTACTCTAGCT
TATACCCCGCCCCTTCCACGTGTTAACGTGTGCTTTGACTCGTGTGGCAG
ACGAGGGCCAAGCCGGTGCTCGATCTAGTTCAGGACATCGTCATGCAGTC
GGCAGCCAAGGTCGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig102:584145..585011+

>mRNA_C-linearis_contig102.810.1 ID=mRNA_C-linearis_contig102.810.1|Name=mRNA_C-linearis_contig102.810.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at C-linearis_contig102:584145..585011+ (Chordaria linearis ClinC8C monoicous)
GACGGGCGTGTGCACTTCTACAAGGCGGCGAAGGCGCCGGACGCGTCCAC
CTGCGAGTACCACCTGAAAAAGATCGAGGAGCTCAACCCGGTGGCAGGCA
AGAAGATGGGTGCTGTCCCCCGCCCGACCTGGGCGATGCACGCAACTCGT
GGTAACGTCGTGTGGGATCAGGTCACGTCCAACATGTCGGAGAGCACGAA
CCACGCCATGGGCGCGGAGGACGGGCGTGTGCACTTCTACAAGGCGGCGA
AGGCGCCGGACGCGTCCACCTGCGAGTACCACCTGAAAAAGATCGAGGAG
CTCAACCCGGTGGCAGGCAAGAAGATGGGTGCTGTCCCCCGCCCGACCTG
GGCGATGCACGCAACTCGTGGTAACGTCGTGTGGGATCAGGTCACGTCCA
ACATGTCGGAGAGCACGAACCACGCCATGGGCGCGGAGACGAGGGCCAAG
CCGGTGCTCGATCTAGTTCAGGACATCGTCATGCAGTCGGCAGCCAAGGT
CGCAACGAGGGCCAAGCCGGTGCTCGATCTAGTTCAGGACATCGTCATGC
AGTCGGCAGCCAAGGTCGCA
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