mRNA_C-linearis_contig101.736.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI) HSP 1 Score: 368 bits (945), Expect = 3.170e-119 Identity = 203/249 (81.53%), Postives = 218/249 (87.55%), Query Frame = 1
Query: 1333 MRHLPRTVA--EGKDGAKASFASEGGPFSLASAQEQ-ESSSSQKKALARLSSSQDLFTSMEEARLRDAAAGALARSRKVAKQTWADIGHGGIGNDAGTDESSSFYADPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRPGDSATEASLRQQKSEDRSSKVRAHMERVSLSIKTEEVAARLKGERRVRGKARTRLRYNRWVNSMDNWLSDEVPKLADYDKRQFSVQNLRLRGGQQVHEALGGPRAM 2070
MRHLPRT A GKDGA SF SEGGPF+ A QEQ E S S K +LA LSS DLF+S+EE RL+DA AGALAR+RKVAKQTWADIGHGGIGNDAGTDESSSFYA PSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQR GDSATEAS R QKSEDRS K++ HMER+SLS+KTEEVAARLK ERRVRGKARTRLRY+RWVNSMDNWL DEVPKLADYDKRQF VQ+ R+RGGQQ+HEALGGP A+
Sbjct: 1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIRGGQQMHEALGGPMAI 249
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: D7FJI1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI1_ECTSI) HSP 1 Score: 303 bits (777), Expect = 7.350e-94 Identity = 182/330 (55.15%), Postives = 213/330 (64.55%), Query Frame = 1
Query: 145 LALAAGEMETERSAASDSYMTSTQMAYISGLHPPPTKVPVMDPYRHRQLLHDRWINRASQRLGDIATLKYGSI---REFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGTSLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRRRN-----SMVEAAPPAESPEEYFFKARADELHSVAVPSK 1110
+A A E + E S SDSY+TSTQMAY S + + + D TL S R FF C + T+C + KSG IELDEF FLG+SE K + S QK++ Q+QADD EA+SVTLQPIQDH+AQRIKNKL+HC+ +AVPNAS GLADNRTMFLKKQFAFL+E+AASRG SL++LV+ALGP+GM+LGV DEDLRLLVKEMDTN DGN+ +KEFAAF+NLDDH+PLYQPLFDGRRRN +MVE APP ESPEE FFKARAD LHSVAVPSK
Sbjct: 1 MAAAVDETQMESSGVSDSYITSTQMAYTS--------------------------DGFNVQARDSVTLPPSSTAASRSFF-----GCT--------TPTATVCST--------------STSSAKSGGIELDEFADFLGQSETKGASSGDPSALQKEKTQQQADDVEARSVTLQPIQDHKAQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNCDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQAMVEQAPPVESPEEEFFKARADHLHSVAVPSK 277
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7R9YBQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ5_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.770e-26 Identity = 73/235 (31.06%), Postives = 130/235 (55.32%), Query Frame = 1
Query: 307 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVP-NASAGLADNRTMFLKKQFAFLNEEAASRGTSLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRR 1008
++RA RL + LKYGS+R+FF +D N +G + +EFS L+ L PR QR +F+++D D+SG+++L+EF L R + P + R ++A + V L+ + RA+ +++ L + + + + + + +T +L F ++++ S D+ ALGP G+++ K++DLR++ + MD N D ++ EF F+N+DD +P Y P +DGRR
Sbjct: 164 LDRAIGRLQQLLVLKYGSVRDFFHTFDENHNGKITLEEFSRTFKRRNLERLIPRREQRLIFERLDADQSGSLDLEEFKSALTRETAFSQPLD-----------RMREEAREKGVKLRRT-NPRAELVRDALLQKVTQRLRMSKESDSVERKTAYLLNIFKQIDKDMTGL-LSADEFAAALGPGGLNVCAKEDDLRMVFEAMDVNEDERISYSEFIDFLNVDDIDPEYNPFYDGRR 385
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7S2DS74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS74_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.360e-18 Identity = 73/242 (30.17%), Postives = 122/242 (50.41%), Query Frame = 1
Query: 307 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFL----GRSEE---KAVPPEELSVWQKQEKQRQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGTSLD--DLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGR 1005
I +L +A KYGS+ E FR +D N DG L +EFS+ ++ L+ LFPR+ QR +F ID D S ++ LDEF F+ G + + K +PP V + S +L +D I + N + G + T+ + F +++ + SLD +++RALGP+ ++L + D+++ LV+ MD N D +V+ +EF F+++ D +P Y +F+ R
Sbjct: 154 IAHVRDKLAALAVEKYGSVTEMFREFDDNKDGELSLEEFSQALSKRHLEKLFPRTDQRIIFKHIDADFSDSVALDEFQGFMDSAVGENYDLFTKTLPPNTEPV-------------KKLSASLTATKDKIVAGIFER-----NNQMKLPDGGDSAKETVI--RAFKHFDKDMSG---SLDRQEIIRALGPEHLNLKISDQEVLNLVEAMDENSDNSVSYREFTEFLDIHDIDPAYNLMFESR 372
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Match: A0A7S3ZVU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVU3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 7.120e-18 Identity = 126/474 (26.58%), Postives = 192/474 (40.51%), Query Frame = 1
Query: 295 HDRWINRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGTIELDEFTRFLGRSEEKAVPPEELSVWQKQEKQ-RQADDAEAQSVTLQPIQDHRAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGT-SLDDLVRALGPQGMDLGVKDEDLRLLVKEMDTNGDGNVNLKEFAAFINLDDHEPLYQPLFDGRRRNSM----VEAAP-PAESPEEYFFKARADELHSVAVPSKILDTEVRMERDRIAQEVKAKLSRGRFARPRSPAWTVGEDVVTVSTPSGRTVVDIWDLPLPTRHLSSVKRSLTSSMRHLPRTVAEGKDGAKASFASEGGPFSLASAQEQESSSSQKKALARLSSSQDLFTSMEEARLRDAAAGALARSRKVAKQTWADIGHGGIGNDAGTDESSSFYADPSERFTTTNSERYAPLI 1695
++R N+A +RL +A KYG +R+ F D N D L DEFS + L+ LFPR QR ++D ID D S ++E++E +L + P + + EK R +D +TL P RI +++ + +A L + + Q + + GT S ++V ALGP+ ++LGV D ++R LV +D +K+F + + DH P + P FD R R + AAP E+ +E K++ + +S + K T A + GR R T+G +V D + PL T RSL + R AE S++ K+AL S+ +F M R + A G R W G GG G S Y DP++RF TT + Y P+I
Sbjct: 170 NERVTNKARERLAQLALHKYGGVRQMFDCLDRNNDKELSLDEFSHALKRRNLEKLFPRDQQRLVYDAIDKDFSESVEVEEMVDWLEKD------PRAAAARRANEKLLRSQEDRNIGEITLPPHLREVKDRIADEV-YKRTRATKTEEGNLRQDEYLINGLQNWDVQNRSKGDGTLSPREIVDALGPKYLNLGVPDAEVRELVDYLDLGE--QCKIKQFVKKLEIGDHAPDFNPFFDARDRELVSLKRTIAAPWQWEATDELLAKSKELQGYSTSPIKKRAQT--------------ASPTYGRRRR------TLGPEV------------DRYVRPLCT------SRSLERHHEIMSRDRAE------------------------HSTAVAKEALTPCDDSEGVFDDMRRTRTQQMA-GICPRFVPQEPTDWTRTGLGGDG----MSPKSGVYLDPTQRFGTTTNRYYTPII 567 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.736.1 >prot_C-linearis_contig101.736.1 ID=prot_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=684bp MPSVGTSTYSQRLDSISRSGWEKENRRKSTGGIEYSPDNLALAAGEMETEback to top mRNA from alignment at C-linearis_contig101:243430..252323- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.736.1 ID=mRNA_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8894bp|location=Sequence derived from alignment at C-linearis_contig101:243430..252323- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:243430..252323- >mRNA_C-linearis_contig101.736.1 ID=mRNA_C-linearis_contig101.736.1|Name=mRNA_C-linearis_contig101.736.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4104bp|location=Sequence derived from alignment at C-linearis_contig101:243430..252323- (Chordaria linearis ClinC8C monoicous)back to top |