mRNA_C-linearis_contig101.733.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.733.1
Unique NamemRNA_C-linearis_contig101.733.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.080e-17
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
            S MM+E  GSPEK+E++R+AILENP LKQAMAQLPGFS+M++ P+KW E+M  A EM + Q++ +Q +      G  DVDDLDD+
Sbjct:  158 SPMMDEFFGSPEKIEESRKAILENPMLKQAMAQLPGFSEMLEDPDKWMESMLQAKEMLEQQRSMLQDQGGAPLGG--DVDDLDDE 240
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.640e-13
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDS 218
            SDMMEEVLG+PEKMEQARQAIL+NPTLKQAM QLPGF+DMIDS
Sbjct:  164 SDMMEEVLGNPEKMEQARQAILDNPTLKQAMTQLPGFADMIDS 206
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1ZLX3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLX3_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 3.570e-8
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            S M ++ +  PE++E++RQ ILENP +K  M  +PG  D+++ PEKWRE M+ A EM+K
Sbjct:  172 SPMFQQYMNDPEQLEKSRQMILENPMMKSMMGSMPGMEDILNDPEKWRETMQAAGEMYK 230
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S4D8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8F3_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 4.980e-8
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDL 335
            SDM  ++ G PEK+E+ RQA++ NP +KQ    +PGF ++++ P+ +RE M  A +  KAQ    +   A +     ++DDL
Sbjct:   30 SDMFSQLFGDPEKLEETRQALISNPMMKQMFGSMPGFEEILNDPDAFREAMTTAQQEMKAQAEARKAARAAKSELTNEIDDL 111
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.200e-7
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAADVDDLDDD 344
            S M+ E    PEK+E ARQ I +NP L+++M+ +PG S++ID P+KWRE M  A E     ++              DVDDL +D
Sbjct:  170 SPMLNEFFSDPEKLEMARQQIADNPMLRESMSSMPGMSEIIDDPQKWREAMTAAKEQMDMLRS----------QAPKDVDDLPED 244
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S1UXN8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UXN8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.210e-7
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:   96 MMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            M +E +  PEK+EQARQ +L+NP LK  + Q+PG  D+++ P+ WRE M+ A+ M++
Sbjct:  146 MFKEFMTDPEKLEQARQMMLQNPMLKGMLGQVPGMEDVVNDPDAWRETMQAAMTMYQ 202
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.220e-6
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFK 266
            S + +E +  PEK+EQ+RQ IL+NP +K  MA +PGF ++++   KWRE M  A +M++
Sbjct:  200 SPLFQEYMKDPEKLEQSRQMILQNPLMKSMMAGMPGFDEILNDEVKWRETMIAAADMYQ 258
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BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Match: M1VHM4_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VHM4_CYAM1)

HSP 1 Score: 57.8 bits (138), Expect = 2.530e-5
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 3 
Query:   90 SDMMEEVLGSPEKMEQARQAILENPTLKQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKA-TMQQEAADEDNGAA 320
            S  M+E L S EK E++RQA+L NP L+Q M   P F ++++ P+KW E+M  A E+F  Q   +   EAA + +GAA
Sbjct:  216 SPAMQEYLSSAEKQEESRQALLNNPFLRQWMDADPQFREVVEDPQKWAESMRAARELFAQQGGLSAATEAAGQTSGAA 293
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CH29_9STRA4.080e-1756.47Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
D8LE10_ECTSI9.640e-1390.70Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S1ZLX3_TRICV3.570e-847.46Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4D8F3_HETAK4.980e-836.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y1L4_9STRA2.200e-740.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1UXN8_9STRA5.210e-745.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2N0G5_9STRA9.220e-644.07Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
M1VHM4_CYAM12.530e-543.59Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:211121..213633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue7e-13
Seed eggNOG ortholog2880.D8LE10
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Exons3
Model size1277
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.733.1prot_C-linearis_contig101.733.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 211141..212703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.5604157-UTR-C-linearis_contig101:211120..2111401622927362.5604157-UTR-C-linearis_contig101:211120..211140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 211121..211140 +
1690879653.556523-UTR-C-linearis_contig101:211120..2111401690879653.556523-UTR-C-linearis_contig101:211120..211140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 211121..211140 +
1622927362.6244667-UTR-C-linearis_contig101:212703..2136331622927362.6244667-UTR-C-linearis_contig101:212703..213633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 212704..213633 +
1690879653.6055188-UTR-C-linearis_contig101:212703..2136331690879653.6055188-UTR-C-linearis_contig101:212703..213633Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 212704..213633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.5768268-CDS-C-linearis_contig101:211140..2111971622927362.5768268-CDS-C-linearis_contig101:211140..211197Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 211141..211197 +
1690879653.5683424-CDS-C-linearis_contig101:211140..2111971690879653.5683424-CDS-C-linearis_contig101:211140..211197Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 211141..211197 +
1622927362.5908391-CDS-C-linearis_contig101:212118..2122501622927362.5908391-CDS-C-linearis_contig101:212118..212250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 212119..212250 +
1690879653.5788653-CDS-C-linearis_contig101:212118..2122501690879653.5788653-CDS-C-linearis_contig101:212118..212250Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 212119..212250 +
1622927362.6071959-CDS-C-linearis_contig101:212565..2127031622927362.6071959-CDS-C-linearis_contig101:212565..212703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 212566..212703 +
1690879653.5888305-CDS-C-linearis_contig101:212565..2127031690879653.5888305-CDS-C-linearis_contig101:212565..212703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 212566..212703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.733.1

>prot_C-linearis_contig101.733.1 ID=prot_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MPGGMPPGVTPEMYQKMMKEMMNSDMMEEVLGSPEKMEQARQAILENPTL
KQAMAQLPGFSDMIDSPEKWRENMEMALEMFKAQKATMQQEAADEDNGAA
DVDDLDDD*
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mRNA from alignment at C-linearis_contig101:211121..213633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2513bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)
CGGGAGGCTTGGGCGGGGGGATGCCGGGGGGCATGCCTCCGGGCGTGACG
CCCGAGATGTACCAGAAGATGATGAAGGTGTGTGTGTGAGTTTGATTCAT
TTTCTCGTCCAGTGGGTTGTTGTTGCTCTGTGTGTTCTCTACTCTCGTGA
AGTCAAAGTTAATGCTAAGTGGTGGCTTTCGTGGGTTTGTCTAGCACCGT
AGACTATAAAATAGTAGCTGGTTTACCTTGTGCGATGTTGGCGAGGAAAC
GATATGCGGGTGAACCAACGCTTGACCTGACCTGCGTTGGGGTAAGGTAT
GAGTCATCCCGACGGGGGTCAGTCGTATGTGTGCTCCCTCTCGGAATGAG
AACCCGAACCCATCCTTTGCAGATGGTTAGTTTGCCTACGTCGTGAAGAT
CTGTGAGACGTCAGCATTTTCCGGGGACCCTTTCTTGGCTGTGCCTGATT
GCATATGTGTTTGATGCCTATGATATACGTTTTGTGTATGACATCACACC
TTTTTGTTTGGTGATGCTTGGTGGCGGCGTTGCGCAGGGTAAGCTGTAGG
AGCGCCCTTGTCCCTAGAGCAGTGTTTCCACCATAAGACTCAAGTGGAAG
GCACGTTCGTGGTGTTGGCGGTTTTTCTGCTGTTGCTTCAGGTGTTTCGA
ATTTGCTCCTTTCCGAGACTGTCTTGTTGATATTGTCTGTACAATATTCC
TCATCTTCACAGGGGTTTGTGTTGTTGACTTGTTCTTTATGGCCTCGCCG
GGCAACGAACCTCGATATTCGATGGGTGTTGGTGTTCGTTTCGTGCGTGT
GTCATGTATGACGATGTACTCGCACGTACCTAGCATTGACCAACGAGAAG
ACGAAAGCTTGAAACTTGTCACTCTTGGCAGGAAAGACGGACGCGGTGTT
TGTTTTTTTCGTGTCGAAACCTTACCTCCCCCCTCGCATTCTCCCAACAT
CGTCTGCGCTGGCTGTGCTTTTTCATCCCGCAACACTCCCTCCCGCAGGA
GATGATGAACTCCGATATGATGGAGGAAGTGCTGGGCAGCCCCGAGAAGA
TGGAGCAGGCACGGCAGGCCATCCTAGAAAACCCTACCCTCAAGCAGGCC
ATGGCGCAGTTGCCGGGCTTCTCCGACATGGTGAGTAAACCAGTACTGCG
GTACACCACACAGGGCGGAAGGACTGCTGTCGTTTGTAAAGGAGGGAAGG
TGGCTCTGCGAGAGGTGCCCGTCTGTGGGACCCCTTGTCGGAAATATTTT
TTCAGTGTTGTACATGTAGTACATGGAGCATAGACGAGAAACCTTGGGGT
TGGCTATTGCGTCGAGGTGTAGGAAATGCGGGCGAAACAAGCCCAAGATA
TGTTTGACGCAAAACTGTTGCAGCGGTTGCATCATTACACCCCAAACGAA
CCATTGTGACCCGCCCCTACTGTGTGTGTTTGTGTGCCCCGACAGATTGA
TTCTCCGGAAAAGTGGCGGGAGAACATGGAGATGGCGCTGGAGATGTTCA
AGGCGCAGAAGGCCACGATGCAGCAGGAGGCAGCGGACGAGGACAACGGT
GCCGCGGACGTTGACGACCTGGACGACGACTAAGCCAAGAATTTTTGTAG
CTTGTTTTAGGTTTTGATGTTTTGACGCCGGCGAGTAGGGGAGAGAGAGA
GCGAGACGCTTTACTGATAGTCCCAGCCTTTGTCGCTCTACGCAATTGAG
TAGATCGAGTCTTTCTCGCGGAGTATGGGAAACGGTTCAAAAAAAAGGCG
GGGTCGACCTTGTCTGACTTGATTTGTACCTGACAGGGGGAAGCCCGGGT
GGAGGTACCGGTGTCATTCACCGCCCGTCGGTTTCCGTTTCGCGTCGATT
CGGTTTGTGTGCGGCCGGGGCTGGAGACTGAAAACGTCTATGTTTTGTTG
TTTTTTCTCTAGTGCAGATAGAGCCACCACGCGCAGAAATGGCAGAGGGG
AAAAGGGGGGGCTGAAAGAGAAAGCGGCGACAGAGCAGTTGGCCTACCAG
TACATACCCGCGGCGAGATCTCTCTCGCGCTTAGGCACGAGGATGATGCT
GACGAGATGTGTGATGCACTGGCACATGTCCTTGGAAGGCGCCGCTGCGC
CGACTGACAAACAAACCTTCCGGTTTTTGCGTCGTTGTCCGGGAGTCCCA
TTTCTCTGGCGTGTCAGTAGGTTCCGTGTTTTTTTCTAACTCTCGCTCTG
CCCCAAAATTCGCTCTCGTTTGTCTTTGTTGAATGAGATACAACTGGGCC
AGGCAGGCGTGTTTGCCGTTGGTAGCTGCATCGGTTTCAGTGTTTTTTTC
GAGCGCGCAAGTTTGATTTGGGCACATTTCTGACTGGTGTGGTGCGCAAC
TCTGTTGCCGATATTGAACAAAAAAGGCAGATAAATGGACGACACCCTTG
AGAATCCTCTCGAGAGGTGGCTGTTTTAGAAAGCTTGTGCAAGCGAATCT
CAACAAACATTTCATCCCCCCCCCCGATTCCCTGCATTGTTAGCATTATT
TGCGCTTCGCCAA
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Coding sequence (CDS) from alignment at C-linearis_contig101:211121..213633+

>mRNA_C-linearis_contig101.733.1 ID=mRNA_C-linearis_contig101.733.1|Name=mRNA_C-linearis_contig101.733.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig101:211121..213633+ (Chordaria linearis ClinC8C monoicous)
ATGCCGGGGGGCATGCCTCCGGGCGTGACGCCCGAGATGTACCAGAAGAT
GATGAAGATGCCGGGGGGCATGCCTCCGGGCGTGACGCCCGAGATGTACC
AGAAGATGATGAAGGAGATGATGAACTCCGATATGATGGAGGAAGTGCTG
GGCAGCCCCGAGAAGATGGAGCAGGCACGGCAGGCCATCCTAGAAAACCC
TACCCTCAAGCAGGCCATGGCGCAGTTGCCGGGCTTCTCCGACATGGAGA
TGATGAACTCCGATATGATGGAGGAAGTGCTGGGCAGCCCCGAGAAGATG
GAGCAGGCACGGCAGGCCATCCTAGAAAACCCTACCCTCAAGCAGGCCAT
GGCGCAGTTGCCGGGCTTCTCCGACATGATTGATTCTCCGGAAAAGTGGC
GGGAGAACATGGAGATGGCGCTGGAGATGTTCAAGGCGCAGAAGGCCACG
ATGCAGCAGGAGGCAGCGGACGAGGACAACGGTGCCGCGGACGTTGACGA
CCTGGACGACGACTAAATTGATTCTCCGGAAAAGTGGCGGGAGAACATGG
AGATGGCGCTGGAGATGTTCAAGGCGCAGAAGGCCACGATGCAGCAGGAG
GCAGCGGACGAGGACAACGGTGCCGCGGACGTTGACGACCTGGACGACGA
CTAA
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