mRNA_C-linearis_contig101.732.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: D8LE10_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE10_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.690e-50 Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 2
Query: 53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKG 376
MR S+FL+SAALLIGSA+DVLGGA PVSVKVTLRGKKYDV+DATSVEDV+KSVEEQAGLAKEQQSVLFKGSLLK EL+LEEAG++DGDTVNIVPSKKPK + +A + G
Sbjct: 1 MRPSSFLISAALLIGSAVDVLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSKKPKTSVAAVEAG 108
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A836CH29_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH29_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.200e-21 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2
Query: 65 NFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAA 367
+ LLSA ++ + + L A P++V VTLRGKKY V +SV D++ V+E+AGL+ EQQSVLFKG LL + DL G++DGDT+N+VPSKKPKA +AA
Sbjct: 4 SLLLSAGAVLAAVVPSLASA-PLNVVVTLRGKKYQV-SGSSVSDIQAEVQEKAGLSAEQQSVLFKGKLLAAGDDLSTVGVSDGDTINVVPSKKPKAERTAA 102
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: W7T2R4_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2R4_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.450e-15 Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 2
Query: 47 RTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSK---------KPKAA---ASAADKGFAVGAG 394
R + ++ FLL LL ++ G A PV+V VTLRGKKYD+ A SV+D++ +E ++GL QQ++LFKG L + L AG+ +GDT+NIVP+K +P+A+ ASA D+ A AG
Sbjct: 4 RKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDL-SAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPPRPRASFSSASAEDEDLATPAG 130
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2N0G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0G5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.490e-14 Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 2
Query: 44 NRTMRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPS 337
NR++ S+ LL G+ V+ G+ P +VKVTLRGK+Y + + ++V +++K VEEQAGL +Q VLF G LK LE+ G+ DG +NIVP+
Sbjct: 3 NRSLISALSSALLVLLYGAIDTVVEGSKPFNVKVTLRGKRYTIPNVSTVRELQKGVEEQAGLTPAKQGVLFGGKKLKPSDVLEDMGVEDGSLINIVPT 100
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2WG81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG81_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 4.300e-14 Identity = 38/75 (50.67%), Postives = 62/75 (82.67%), Query Frame = 2
Query: 131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAA 355
++V TLRGKK+DV A++V+++R+++E +AG+ +++QSVLFKG L ++ LE+AG+++GDT+N+VP K PKAA
Sbjct: 29 LNVVCTLRGKKFDVA-ASNVQEIREALEAKAGIEQDRQSVLFKGKKLDADQILEDAGVSEGDTINVVPLKAPKAA 102
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: B7G5I5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I5_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 1.040e-10 Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 2
Query: 53 MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRKSVEEQAG-LAKEQQSVLFKGSLLKSELDLEEAGIADGDTVNIVPSKK 343
MR+ L +A L+G + P +V+VTLRGKKYDV D +V+D++ +EE +G LA +Q VLF G L+S L + G+ADG +NIVPS K
Sbjct: 1 MRTVFTLFLSATLLGRWLAAASAPVP-NVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPSSK 97
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A7S2Y1L4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1L4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.810e-10 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query: 131 VSVKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSV-LFKGSLLKSELDLEEAGIADGDTVNIVPSKKPKAAASAADKGFA 382
+ V VTL+G++Y V AT+V D++ +E+QA L Q V LFKG +L E DLE G+ GD +N+VPS+KP+ AAS + G A
Sbjct: 23 LDVFVTLKGQRYSV-TATAVGDIKDELEKQAALDPSQDFVVLFKGKVLSPEDDLEAEGVKSGDIINMVPSRKPRPAASPSSVGAA 106
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Match: A0A448YZF6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZF6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.930e-7 Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 2
Query: 110 VLGGAN-----PVS-VKVTLRGKKYDVKDATSVEDVRKSVEEQAGLAKEQQSVLFKGSLLKSELD--LEEAGIADGDTVNIVPSKK 343
+LGGA+ PVS V VTL+GKKY + D T++ ++++ +EE +G+ +Q + SE D L EAG+ +GD +N VP+KK
Sbjct: 18 LLGGASAAPPTPVSNVHVTLKGKKYQIDDVTTLAELQERLEEHSGIPPSKQGKILHNGKRLSESDDGLSEAGVQEGDQLNCVPAKK 103 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.732.1 >prot_C-linearis_contig101.732.1 ID=prot_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp MRSSNFLLSAALLIGSAIDVLGGANPVSVKVTLRGKKYDVKDATSVEDVRback to top mRNA from alignment at C-linearis_contig101:207735..211038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3304bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:207735..211038+ >mRNA_C-linearis_contig101.732.1 ID=mRNA_C-linearis_contig101.732.1|Name=mRNA_C-linearis_contig101.732.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig101:207735..211038+ (Chordaria linearis ClinC8C monoicous)back to top |