mRNA_C-linearis_contig101.729.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.729.1
Unique NamemRNA_C-linearis_contig101.729.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 1.100e-121
Identity = 212/313 (67.73%), Postives = 243/313 (77.64%), Query Frame = 1
Query:    1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            NNN  N++N M T  IKINFQG + DV++P+P TLA LQ  IA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCP SLEI+AA KE  AA+ PD E RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMS+EDDKKEWNDGFVSVEPA  +       D+DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKK A KR+G
Sbjct:    7 NNNRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSP-----DNDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG 309          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 8.170e-121
Identity = 210/303 (69.31%), Postives = 236/303 (77.89%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            M T  IKINFQGT+ DV++P P TLA LQ AIA  F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE   A KPDPE RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVSVEPA  +        +DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GK LRAML+AEKK A KR G
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPG-----NDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRG 293          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 5.540e-119
Identity = 211/312 (67.63%), Postives = 238/312 (76.28%), Query Frame = 1
Query:    1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKR 924
            NNN  N++  M T  IKINFQG + DV++P+P +LA LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+A  KE+  AKKPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVS E    A A P TA+    DN    ++ D     K++++HKAFI  GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML AEKKAA KR
Sbjct:    9 NNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 7.450e-118
Identity = 210/312 (67.31%), Postives = 238/312 (76.28%), Query Frame = 1
Query:    4 NNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            NN  N++  M T  IKINFQG + DV +P+P TLA LQ AIA+ F   +P RS   EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LALRLCP SLEI+AA KE  A K PD E  LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +     LG  K NNEDL+E VAAGME MSVEDDKKEWNDGFVSVEPA       E   SDN    ++++D+ AP  K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKKAA KR+G
Sbjct:   19 NNRYNNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK-NNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPA-------ETSSSDNGN--EEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG 320          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 1.400e-114
Identity = 206/312 (66.03%), Postives = 239/312 (76.60%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAA-KKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGD 948
            M T  IKINFQGT+ +V++ +PFTLA LQ  IA+ F   +P RS A EA KD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE     KPDPE RLY +AARNLREYNGVPSMT  KLIKTLAFL+LNPRRLVKQ LAPK LL RM A   N  +     LG D  NNEDL+ESVAAGMELMSVEDDKKE N+GFVS +P   A A P TA+    DN    ++++D+ AP  K+N++H AFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GKYLRAML+AE KAA KR+G + + D
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLG-DGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDN--EEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNND 309          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.210e-111
Identity = 201/303 (66.34%), Postives = 228/303 (75.25%), Query Frame = 1
Query:   31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930
            M T  IKI FQG + DV++  P  LA LQ AIA+ F   +PARS A EAA D+DLSFTYKDP+GDDIVFDK+SEL LALRLCP SLEI+AA KE  A + PD E +LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL+ESVAAGMELMSVED KKEWNDGFVSVEPA  +        +DN    ++K+D  AP  K+N++HKAFIA GIQLRPREVRPLL+ALDV P RL KLG V GK LRAML AEKK A KR+G
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPA-----NDN----EEKND-AAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHG 310          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 3.370e-101
Identity = 187/283 (66.08%), Postives = 217/283 (76.68%), Query Frame = 1
Query:    7 NNTNDNNKM-NTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVE---PAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDV 834
            NN ++N+KM  T  IKINFQG + DV++P+P TL  LQ AIA+ F   +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+AA KE+  A KPDPE RLY +AARNLREYNGVPSMTP KLIKTLAFL+LNP+RLVKQ LAPK LL RM A   N  +    PLG  K NNEDL++SVAAGMELMSVED KKEWNDGFVS E   PA AAP TAE    DN    ++++D+ AP  K+N++HKAFIA GIQLRPRE   LLL + +
Sbjct:    7 NNCDNNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDK--EEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.690e-11
Identity = 61/171 (35.67%), Postives = 77/171 (45.03%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   LY  AARNL EY+GVPSMT   L KT+  LQL P RLV Q LAPK LL   +AA     +A                E      +   V DD    +     +E              D+ A     D  T   ++ +H  F+AAG+QLRPRE RPLL
Sbjct:   38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAA----GDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIE-------------HDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLL 191          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.160e-8
Identity = 57/171 (33.33%), Postives = 79/171 (46.20%), Query Frame = 1
Query:  307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819
            K +  +  +P   ++  AARNLREY+GVPS+TP  L  T+  L+L P RLV Q LAPK LL   + A  + D       GG ++  E  +   +  +   S  D     ND  V+                  A A+K          + +   F+A G+QLRPRE RPLL
Sbjct:   28 KPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGS--GGFEAEEEQANNQFSHDLSSNS-SDGGDTGNDNIVTQNSI-----------GFEARASK----------HPIQAVFVAVGVQLRPRETRPLL 174          
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-6
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1
Query:  346 LYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKAL 486
            LY  AARNLREY+GVPSMT   L KT+  LQL P RLV Q LAPK +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LN66_ECTSI1.100e-12167.73PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI8.170e-12169.31PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE5.540e-11967.63PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE7.450e-11867.31PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE1.400e-11466.03PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE1.210e-11166.34PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI3.370e-10166.08PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3J2_9PHAE2.690e-1135.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE2.160e-833.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE1.530e-665.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:187173..189399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1260
Cds size1230
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.729.1prot_C-linearis_contig101.729.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 187173..189369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.2264738-CDS-C-linearis_contig101:187172..1873391622927362.2264738-CDS-C-linearis_contig101:187172..187339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 187173..187339 -
1690879653.3883858-CDS-C-linearis_contig101:187172..1873391690879653.3883858-CDS-C-linearis_contig101:187172..187339Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 187173..187339 -
1622927362.2373455-CDS-C-linearis_contig101:187498..1882761622927362.2373455-CDS-C-linearis_contig101:187498..188276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 187499..188276 -
1690879653.3999643-CDS-C-linearis_contig101:187498..1882761690879653.3999643-CDS-C-linearis_contig101:187498..188276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 187499..188276 -
1622927362.248545-CDS-C-linearis_contig101:189084..1893691622927362.248545-CDS-C-linearis_contig101:189084..189369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 189085..189369 -
1690879653.4086566-CDS-C-linearis_contig101:189084..1893691690879653.4086566-CDS-C-linearis_contig101:189084..189369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 189085..189369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927362.2614627-UTR-C-linearis_contig101:189369..1893991622927362.2614627-UTR-C-linearis_contig101:189369..189399Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 189370..189399 -
1690879653.4172676-UTR-C-linearis_contig101:189369..1893991690879653.4172676-UTR-C-linearis_contig101:189369..189399Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 189370..189399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.729.1

>prot_C-linearis_contig101.729.1 ID=prot_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp
MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAA
KDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAAKKP
DPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPK
ALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKE
WNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAA
GIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG
GNASGDGRPRQRMARGCGARGVGGPGGKPCGRRMMMLRGNLHPVAHPPSP
PVFHGEDGAGFHRGHPHGPPHKRHGRHAGGPEEGEEGAGFHRGPRHGMMR
VRHARGGRQH
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mRNA from alignment at C-linearis_contig101:187173..189399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.729.1 ID=mRNA_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2227bp|location=Sequence derived from alignment at C-linearis_contig101:187173..189399- (Chordaria linearis ClinC8C monoicous)
AACAACAACAACACCAACGACAACAACAAGATGAACACTCGCAAAATCAA GATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCCGTTCA CGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCGGGATG CCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTGTCCTT CACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGACTCCG AGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCACCGCG GCCGCCAAGGAAACGGTGAGAGACGCTACAAGTACTCGAAACTCATGGAG TACACTGGTACTAGATTTGCGGTAGCTTGTGAGTTGGTTGCAGCGTGAGC GCGTGAGCTCGGTACGTTTGTAGAGAGAGTTGGATCAAAGTAGGCCATGA TCGCTGTAAGCCCGTCTTCACTCTGTCTTTTGAGGCCTGTACTTGGTGCG CCCGACTCCTGTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAA AACCATCCCGGTCCCGTCTCTATCCAGTACCTCCTTCTGTCTCAACCTCT CCGTAATCCATCACTTGACGCGGCCAATTTCCGTGGTCACAAGCTAACTT ACCTCTGTGTACGTACTTTTTTATTTTAATTTGTGTAACACCCGCAACGC GATTCCGGCGCTGCTCGTTGGGAACTCGTCTTCGGATGACCCCTCACGCA CAGACGAAATAAGAAATAAATCGGTAGACGAGAGTCGGTCTCGTGTCGTA TATTGTATCATACCGGTATTTCTTCAAATCGATTGGAGTCTGTGTAGTCA CCAAGCTATCATCGCGTTGATTCAGTGGCGATTTTCCTCTTCTCGAAGCT TTGGGAACTGCTGTGCTTGTTCGCTGTGCTTGTTCATCCTCTCTCCCCGT CACAAGAGTTCGACATCACCAGTACCGTATGTCTGTATCTATCGGCGAAG TTGTGTTACCCCACACCGCTGTAGAGTCTAAACAATCAGTACTTGTACGT GTATTTGACGTTCCTCGTCCTCCCTCCCCTCCCGCTCATTCTTTTCCCCT CTCCCTCTCTTCAACCCTTGCAGGCGGCCAAGAAGCCCGACCCCGAACAC CGGCTGTACACCGTCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCC CTCCATGACCCCGAAGAAGCTCATCAAGACCCTGGCGTTCCTCCAGCTCA ACCCGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATC CGCATGGCCGCCGCCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCT CGGCGGTGACAAGAGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTG GCATGGAGCTGATGAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGT TTCGTATCCGTCGAACCCGCACCCGCCGCCCCTACTACAGCGGAAGTGGT CGACTCCGACAACGCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGC CCAAGGAGAACGTACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTC CGCCCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCG CCGCCTGGTGAAGCTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGC TCGAGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGC GGCGACGGCCGCCCTCGCCAGCGCATGGCTCGGGGCTGCGGTGCTCGCGG CGTCGGTGGGCCGGGCGGCAAGCCGTGCGGCCGGAGGATGATGATGCTGC GTGGCAACCTCCACCCGGTCGCCCACCCGCCCTCGCCCCCCGTCTTTCAT GGTTGAGGGGAGGACGGCATGTTCTTCGTGCCGGTCGAGCGCGGCGGTGG TGGTGGTCGCCGCCCCTCCCCACGGCCCTCCCCACGGCCCTCCGCACGGC CCTCCCCATGGCCCTCCCCGCACAAGCGCCACGGGCGCCACGCTGGCGGA CCCGAGGAAGGCGAGGACGGGGCTGGGTTCCACCGCGGCCATCCCCACGG CCCCCCGCACAAGCGCCACGGGCGCCACGCCGGCGGGCCCGAGGAAGGCG AGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCACGGAATGATGAGGGTT CGCCATGCTCGCGGCGGTCGCCAGCAC
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Coding sequence (CDS) from alignment at C-linearis_contig101:187173..189399-

>mRNA_C-linearis_contig101.729.1 ID=mRNA_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at C-linearis_contig101:187173..189399- (Chordaria linearis ClinC8C monoicous)
ATGAACACTCGCAAAATCAAGATCAACTTCCAGGGCACCGCTGGCGACGT
CGACCTTCCGTCCCCGTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTT
CAACCTTCGGCACCGGGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCC
AAGGACAGCGACCTGTCCTTCACCTACAAGGACCCTGAGGGCGACGACAT
CGTGTTCGACAAGGACTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCA
GCTCGCTCGAGATCACCGCGGCCGCCAAGGAAACGATGAACACTCGCAAA
ATCAAGATCAACTTCCAGGGCACCGCTGGCGACGTCGACCTTCCGTCCCC
GTTCACGCTCGCCGGCCTCCAGCAAGCCATCGCTTCAACCTTCGGCACCG
GGATGCCCGCTCGCTCCGGCGCTGATGAGGCCGCCAAGGACAGCGACCTG
TCCTTCACCTACAAGGACCCTGAGGGCGACGACATCGTGTTCGACAAGGA
CTCCGAGCTGAGCCTGGCGCTTCGCCTGTGCCCCAGCTCGCTCGAGATCA
CCGCGGCCGCCAAGGAAACGGCGGCCAAGAAGCCCGACCCCGAACACCGG
CTGTACACCGTCGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCCCTC
CATGACCCCGAAGAAGCTCATCAAGACCCTGGCGTTCCTCCAGCTCAACC
CGCGCCGCCTCGTCAAGCAGAGCCTGGCCCCCAAGGCGCTGCTGATCCGC
ATGGCCGCCGCCAAGAAGAACGAGGACGAGGCGCAGCCCCAGCCCCTCGG
CGGTGACAAGAGCAACAACGAAGATCTCTCCGAGTCGGTCGCCGCTGGCA
TGGAGCTGATGAGCGTCGAGGACGACAAGAAGGAGTGGAACGACGGTTTC
GTATCCGTCGAACCCGCACCCGCCGCCCCTACTACAGCGGAAGTGGTCGA
CTCCGACAACGCCGCTGCCGCGAAGGACAAGGACGACAATACCGCGCCCA
AGGAGAACGTACTCCACAAGGCCTTCATCGCCGCCGGCATCCAGCTCCGC
CCCCGCGAGGTCCGGCCCCTGCTTCTCGCCCTGGACGTCCGCCCCCGCCG
CCTGGTGAAGCTCGGCTACGTGGACGGCAAGTACCTTCGCGCCATGCTCG
AGGCGGAGAAGAAGGCCGCCCCGAAGCGCAACGGCGGTAACGCCAGCGGC
GACGGCCGCCCTCGCCAGCGCATGGCTCGGGGCTGCGGTGCTCGCGGCGT
CGGTGGGCCGGGCGGCAAGCCGTGCGGCCGGAGGATGATGATGCTGCGTG
GCAACCTCCACCCGGTCGCCCACCCGCCCTCGCCCCCCGTCTTTCATGGC
GGCCAAGAAGCCCGACCCCGAACACCGGCTGTACACCGTCGCCGCCCGCA
ACCTCCGCGAGTACAACGGCGTGCCCTCCATGACCCCGAAGAAGCTCATC
AAGACCCTGGCGTTCCTCCAGCTCAACCCGCGCCGCCTCGTCAAGCAGAG
CCTGGCCCCCAAGGCGCTGCTGATCCGCATGGCCGCCGCCAAGAAGAACG
AGGACGAGGCGCAGCCCCAGCCCCTCGGCGGTGACAAGAGCAACAACGAA
GATCTCTCCGAGTCGGTCGCCGCTGGCATGGAGCTGATGAGCGTCGAGGA
CGACAAGAAGGAGTGGAACGACGGTTTCGTATCCGTCGAACCCGCACCCG
CCGCCCCTACTACAGCGGAAGTGGTCGACTCCGACAACGCCGCTGCCGCG
AAGGACAAGGACGACAATACCGCGCCCAAGGAGAACGTACTCCACAAGGC
CTTCATCGCCGCCGGCATCCAGCTCCGCCCCCGCGAGGTCCGGCCCCTGC
TTCTCGCCCTGGACGTCCGCCCCCGCCGCCTGGTGAAGCTCGGCTACGTG
GACGGCAAGTACCTTCGCGCCATGCTCGAGGCGGAGAAGAAGGCCGCCCC
GAAGCGCAACGGCGGTAACGCCAGCGGCGACGGCCGCCCTCGCCAGCGCA
TGGCTCGGGGCTGCGGTGCTCGCGGCGTCGGTGGGCCGGGCGGCAAGCCG
TGCGGCCGGAGGATGATGATGCTGCGTGGCAACCTCCACCCGGTCGCCCA
CCCGCCCTCGCCCCCCGTCTTTCATGGCGAGGACGGGGCTGGGTTCCACC
GCGGCCATCCCCACGGCCCCCCGCACAAGCGCCACGGGCGCCACGCCGGC
GGGCCCGAGGAAGGCGAGGAAGGTGCTGGCTTCCACCGCGGCCCTCGCCA
CGGAATGATGAGGGTTCGCCATGCTCGCGGCGGTCGCCAGCACGCGAGGA
CGGGGCTGGGTTCCACCGCGGCCATCCCCACGGCCCCCCGCACAAGCGCC
ACGGGCGCCACGCCGGCGGGCCCGAGGAAGGCGAGGAAGGTGCTGGCTTC
CACCGCGGCCCTCGCCACGGAATGATGAGGGTTCGCCATGCTCGCGGCGG
TCGCCAGCAC
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