mRNA_C-linearis_contig101.716.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.716.1
Unique NamemRNA_C-linearis_contig101.716.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.716.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.240e-26
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:   31 VVIVLGECADYRQVMTYVVSKGLKSAERAWLVLLAARDPACHVSASTCGSDDGRDALALSALSGTLSIDWAPVVPVAARANVAAIVEAAAVLDRENFAA 327
            VVIVLGECADYRQVMT+   +GLKS ERAWL+L AARDP CH SA+ CG DDGRDALALS++SG LSIDWA ++P + R +V A ++ A  L RE  A+
Sbjct:  243 VVIVLGECADYRQVMTFAAMRGLKS-ERAWLLLSAARDPTCHASAAACGRDDGRDALALSSMSGALSIDWA-LMPTS-RTSVEACMDPAVALGREGLAS 338
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BLAST of mRNA_C-linearis_contig101.716.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.170e-25
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:   31 VVIVLGECADYRQVMTYVVSKGLKSAERAWLVLLAARDPACHVSASTCGSDDGRDALALSALSGTLSIDWAPVVPVAARANVAAIVEAAAVLDRENFAA 327
            VVIVLGECADYRQVMT+   +GLKS ERAWL+L AARDP CH SA+ CG DDGRDALALS++SG LSIDWA ++P + R +  A V+ A  L RE+ A+
Sbjct:  221 VVIVLGECADYRQVMTFAAMRGLKS-ERAWLLLSAARDPTCHASAAACGRDDGRDALALSSMSGALSIDWA-LMPTS-RTSAEAYVDPAVALGRESPAS 316
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI9.240e-2664.65Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE3.170e-2564.65Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:98431..100010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons3
Model size647
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.716.1prot_C-linearis_contig101.716.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 98431..100010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927358.4477692-CDS-C-linearis_contig101:98430..984991622927358.4477692-CDS-C-linearis_contig101:98430..98499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 98431..98499 +
1690879650.8534555-CDS-C-linearis_contig101:98430..984991690879650.8534555-CDS-C-linearis_contig101:98430..98499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 98431..98499 +
1622927358.4598727-CDS-C-linearis_contig101:99088..991981622927358.4598727-CDS-C-linearis_contig101:99088..99198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 99089..99198 +
1690879650.8727124-CDS-C-linearis_contig101:99088..991981690879650.8727124-CDS-C-linearis_contig101:99088..99198Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 99089..99198 +
1622927358.469276-CDS-C-linearis_contig101:99544..1000101622927358.469276-CDS-C-linearis_contig101:99544..100010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 99545..100010 +
1690879650.8823824-CDS-C-linearis_contig101:99544..1000101690879650.8823824-CDS-C-linearis_contig101:99544..100010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 99545..100010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.716.1

>prot_C-linearis_contig101.716.1 ID=prot_C-linearis_contig101.716.1|Name=mRNA_C-linearis_contig101.716.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp
GSGSGSGSGSVVIVLGECADYRQVMTYVVSKGLKSAERAWLVLLAARDPA
CHVSASTCGSDDGRDALALSALSGTLSIDWAPVVPVAARANVAAIVEAAA
VLDRENFAAAFFPPPAGEAVAESKASSVFFSGGWSEQQQQQQQQLLRSSS
SDAGDERRSCGGGGGGGGGVCPAAKEYRAVPLDVPGGVFRAAALIFDAVE
LGGRVLAAAAGDGDG
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mRNA from alignment at C-linearis_contig101:98431..100010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.716.1 ID=mRNA_C-linearis_contig101.716.1|Name=mRNA_C-linearis_contig101.716.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at C-linearis_contig101:98431..100010+ (Chordaria linearis ClinC8C monoicous)
GGGAGCGGGAGCGGGAGCGGGAGCGGTAGTGTCGTGATTGTTCTCGGGGA
GTGCGCCGACTACCGTCAGGTAGGCAAAGTTGCTCAACGGGGACAAATGG
ACCGTATCCACGCCGTGAGTAGTGGCGTGACCGTTGTGGAGAGGGAAGGT
GTACGCGTGCCCGTGCGTGTACGTGCACTACTTATGTGTATTGTTGAGGT
TAGGGGGAGCAGCGGCAGTGGCAAGGCTGTTATTTCCTCCGGGGGGGGCG
GATCATTCGGCTGCACGGTGGCAGATGTGAATCGCTTTGTTTGCGCGCAA
GTCGAACATTTCGTTCCATTGCTTCGCTGAGCTGCCGCGGCGTACGTTTT
AACCCTTATACCGGACGCAGCGGGTGTGAAGCGTACGGGGAGGGGGAGGG
GGCGTGGTGAAGATTTTGTTGCGTTCGTTCATGCACTTCTTTCCTTTTTT
TTTATGCCCTTTGCTTTCTCTTCTTCCCAGCGTCTGTGGCCGCATGCCTT
GCCTTGCCTCGGCTGCGTCTTGCTTTTTACGCGTGATCTCATCTCACCTC
ATCTCATGTCATCCCATGTCATGTCATGTCATCTCATCTCATCCCATGTC
ATCTCATCTCATCTCATCTCATCTTTTTTCCATGTCTCGTTTTGCTGTTT
TGACTCAGGTGATGACGTACGTGGTGTCGAAGGGGCTGAAGTCGGCGGAG
CGGGCGTGGCTCGTCCTCCTCGCAGCGCGCGATCCAGCTTGCCATGTCAG
CGCGTCCACCTGCGGCAGGCAAGTGTAGTGGTCTTGAAAAAAGGCCGCCC
GGCGCAGGGCTATACGATACTATACGATACTATACGATACTATACGATAC
TATACGATACTACCGGTCCCACAGAGCACGTGCAAACTAACGTTGTCGTT
CCCTCCACGACGAGTGGCTTGATCAGGACGGGAATTCTACACTCTCCGCC
CCCCCTGTGGTGTGGCCCTCCCCCCCCCTCCCCGCGACATCCTCTTTGCT
TGTTCGCCTGAACAACGCCCCGTTCCGTCACCACACGGCTAGTCCTAATT
GTCTGTCGCCACGATCCAATTCCCGCCTGCCCTTAAAAAAAAACTGGAAC
ACCGGGACAAGCAGCGACGACGGCCGGGACGCCCTGGCTCTCTCCGCCCT
GTCCGGGACCCTGTCGATTGACTGGGCCCCGGTGGTGCCGGTCGCCGCCC
GCGCGAACGTGGCGGCGATAGTGGAGGCCGCGGCCGTCCTCGACCGGGAG
AACTTCGCGGCGGCGTTCTTCCCGCCGCCCGCGGGAGAGGCGGTCGCGGA
ATCCAAGGCGTCTTCTGTCTTCTTCTCGGGGGGGTGGAGCGAGCAGCAGC
AGCAGCAGCAGCAGCAGCTGCTGCGCTCCTCGTCTTCGGACGCTGGTGAT
GAGCGACGTTCGTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGTCTGTCC
CGCGGCCAAGGAGTACAGGGCCGTGCCCTTGGACGTCCCGGGGGGCGTTT
TTAGGGCGGCAGCTCTCATCTTCGACGCCGTCGAGCTTGGGGGGCGCGTC
CTTGCCGCGGCGGCCGGCGATGGGGACGGG
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Coding sequence (CDS) from alignment at C-linearis_contig101:98431..100010+

>mRNA_C-linearis_contig101.716.1 ID=mRNA_C-linearis_contig101.716.1|Name=mRNA_C-linearis_contig101.716.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig101:98431..100010+ (Chordaria linearis ClinC8C monoicous)
GGGAGCGGGAGCGGGAGCGGGAGCGGTAGTGTCGTGATTGTTCTCGGGGA
GTGCGCCGACTACCGTCAGGGGAGCGGGAGCGGGAGCGGGAGCGGTAGTG
TCGTGATTGTTCTCGGGGAGTGCGCCGACTACCGTCAGGTGATGACGTAC
GTGGTGTCGAAGGGGCTGAAGTCGGCGGAGCGGGCGTGGCTCGTCCTCCT
CGCAGCGCGCGATCCAGCTTGCCATGTCAGCGCGTCCACCTGCGGCAGGT
GATGACGTACGTGGTGTCGAAGGGGCTGAAGTCGGCGGAGCGGGCGTGGC
TCGTCCTCCTCGCAGCGCGCGATCCAGCTTGCCATGTCAGCGCGTCCACC
TGCGGCAGCGACGACGGCCGGGACGCCCTGGCTCTCTCCGCCCTGTCCGG
GACCCTGTCGATTGACTGGGCCCCGGTGGTGCCGGTCGCCGCCCGCGCGA
ACGTGGCGGCGATAGTGGAGGCCGCGGCCGTCCTCGACCGGGAGAACTTC
GCGGCGGCGTTCTTCCCGCCGCCCGCGGGAGAGGCGGTCGCGGAATCCAA
GGCGTCTTCTGTCTTCTTCTCGGGGGGGTGGAGCGAGCAGCAGCAGCAGC
AGCAGCAGCAGCTGCTGCGCTCCTCGTCTTCGGACGCTGGTGATGAGCGA
CGTTCGTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGTCTGTCCCGCGGC
CAAGGAGTACAGGGCCGTGCCCTTGGACGTCCCGGGGGGCGTTTTTAGGG
CGGCAGCTCTCATCTTCGACGCCGTCGAGCTTGGGGGGCGCGTCCTTGCC
GCGGCGGCCGGCGATGGGGACGGGCGACGACGGCCGGGACGCCCTGGCTC
TCTCCGCCCTGTCCGGGACCCTGTCGATTGACTGGGCCCCGGTGGTGCCG
GTCGCCGCCCGCGCGAACGTGGCGGCGATAGTGGAGGCCGCGGCCGTCCT
CGACCGGGAGAACTTCGCGGCGGCGTTCTTCCCGCCGCCCGCGGGAGAGG
CGGTCGCGGAATCCAAGGCGTCTTCTGTCTTCTTCTCGGGGGGGTGGAGC
GAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCGCTCCTCGTCTTCGGA
CGCTGGTGATGAGCGACGTTCGTGCGGCGGCGGCGGCGGCGGCGGCGGCG
GTGTCTGTCCCGCGGCCAAGGAGTACAGGGCCGTGCCCTTGGACGTCCCG
GGGGGCGTTTTTAGGGCGGCAGCTCTCATCTTCGACGCCGTCGAGCTTGG
GGGGCGCGTCCTTGCCGCGGCGGCCGGCGATGGGGACGGG
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