mRNA_C-linearis_contig100.693.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig100.693.1
Unique NamemRNA_C-linearis_contig100.693.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig100contigC-linearis_contig100:291362..292266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size823
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig100.693.1prot_C-linearis_contig100.693.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig100 291517..292258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.8546543-UTR-C-linearis_contig100:291361..2915161622927352.8546543-UTR-C-linearis_contig100:291361..291516Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 291362..291516 +
1690879646.9310544-UTR-C-linearis_contig100:291361..2915161690879646.9310544-UTR-C-linearis_contig100:291361..291516Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 291362..291516 +
1622927352.9154718-UTR-C-linearis_contig100:292258..2922661622927352.9154718-UTR-C-linearis_contig100:292258..292266Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 292259..292266 +
1690879646.9630697-UTR-C-linearis_contig100:292258..2922661690879646.9630697-UTR-C-linearis_contig100:292258..292266Chordaria linearis ClinC8C monoicousUTRC-linearis_contig100 292259..292266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.8644614-CDS-C-linearis_contig100:291516..2920641622927352.8644614-CDS-C-linearis_contig100:291516..292064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 291517..292064 +
1690879646.9445577-CDS-C-linearis_contig100:291516..2920641690879646.9445577-CDS-C-linearis_contig100:291516..292064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 291517..292064 +
1622927352.8748827-CDS-C-linearis_contig100:292146..2922581622927352.8748827-CDS-C-linearis_contig100:292146..292258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 292147..292258 +
1690879646.953994-CDS-C-linearis_contig100:292146..2922581690879646.953994-CDS-C-linearis_contig100:292146..292258Chordaria linearis ClinC8C monoicousCDSC-linearis_contig100 292147..292258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig100.693.1

>prot_C-linearis_contig100.693.1 ID=prot_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp
MSTFESDEIEGWDDLTPALQQLLKTQHDAIANQQGELELLRFQKQEQQQR
DTSEAAAQQRTDTPVRHGADTGASSSAPAAREEPRPTPGGQDEEEAQDVE
DQEATETQSRENPDETPEAITPLPPIISSLQPREKASLPSRETALAPALE
IYMEGGCDVRADNELDRMERGCAGCAVTPAAVQIRLSSNRRAGHNNINSS
VPHGRNWRLSRRRAGGLSM*
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mRNA from alignment at C-linearis_contig100:291362..292266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig100.693.1 ID=mRNA_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at C-linearis_contig100:291362..292266+ (Chordaria linearis ClinC8C monoicous)
AATACCTGTACCGATCCCGGTCGACTGCCTTTACTCTGAGCGCCCCGACA
ATTGGGCCCCCACAGCACCATCTACGATTTATCTCTTACACTAGTAGTGT
TTATCCTAAATATCGTGGGTGAATGTGCTGATAGAGACCACGACCCGTGG
GTGGCATGTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTC
ACTCCAGCGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAA
CCAGCAAGGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAAC
AACGAGACACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTT
CGGCATGGGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGA
GGAGCCGCGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATG
TTGAAGACCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAG
ACACCAGAGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACC
ACGGGAGAAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGT
TAGAAATATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTA
GACCGCATGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGT
GCAGCGACTGCCAAGCGCTGGGGTAGAGTCGCCCTTAGCGGCGATACCGG
AGCTGGATCCACCATCGGAGGAGCAACAGCAACAGGATCCGGTTGTCTTC
AAACCGGAGAGCAGGTCACAACAACATCAACAGCAGTGTACCGCATGGGA
GGAACTGGCGGCTCAGCCGGAGGAGAGCTGGTGGGTTAAGCATGTGAAGG
ACGCC
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Coding sequence (CDS) from alignment at C-linearis_contig100:291362..292266+

>mRNA_C-linearis_contig100.693.1 ID=mRNA_C-linearis_contig100.693.1|Name=mRNA_C-linearis_contig100.693.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig100:291362..292266+ (Chordaria linearis ClinC8C monoicous)
ATGTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTCACTCC
AGCGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAACCAGC
AAGGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAACAACGA
GACACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTTCGGCA
TGGGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGAGGAGC
CGCGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATGTTGAA
GACCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAGACACC
AGAGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACCACGGG
AGAAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGTTAGAA
ATATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTAGACCG
CATGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGTGCAAT
GTCGACTTTCGAGAGCGACGAAATCGAGGGTTGGGATGACCTCACTCCAG
CGTTGCAGCAGCTGTTGAAGACACAGCACGATGCCATCGCCAACCAGCAA
GGGGAACTGGAGCTTCTACGGTTCCAGAAACAAGAACAACAACAACGAGA
CACTTCGGAGGCAGCCGCGCAGCAGCGGACTGACACTCCAGTTCGGCATG
GGGCGGACACGGGAGCATCCTCATCGGCACCAGCTGCACGAGAGGAGCCG
CGGCCGACACCCGGAGGACAAGACGAAGAAGAAGCACAAGATGTTGAAGA
CCAGGAAGCAACCGAGACTCAGAGCCGGGAGAACCCTGATGAGACACCAG
AGGCAATAACTCCACTCCCCCCAATAATATCATCCCTCCAACCACGGGAG
AAGGCATCCCTCCCGTCACGGGAGACGGCACTGGCGCCAGCGTTAGAAAT
ATATATGGAAGGTGGGTGTGACGTGCGGGCTGACAACGAGTTAGACCGCA
TGGAGAGAGGATGTGCTGGGTGTGCGGTCACACCTGCTGCAGTGCAGATC
CGGTTGTCTTCAAACCGGAGAGCAGGTCACAACAACATCAACAGCAGTGT
ACCGCATGGGAGGAACTGGCGGCTCAGCCGGAGGAGAGCTGGTGGGTTAA
GCATGTGAGATCCGGTTGTCTTCAAACCGGAGAGCAGGTCACAACAACAT
CAACAGCAGTGTACCGCATGGGAGGAACTGGCGGCTCAGCCGGAGGAGAG
CTGGTGGGTTAAGCATGTGA
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