mRNA_C-linearis_contig10.623.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: D7G8S6_ECTSI (GTP:AMP phosphotransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S6_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 8.530e-141 Identity = 207/258 (80.23%), Postives = 229/258 (88.76%), Query Frame = 3
Query: 96 IQRGAFRIGVRVRGNSAIAPPRHRQQQTMAFSTPTAVKKIAAIVMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTLPKGKPTAG 869
+ RGAFR+ V +RG+ +H+ QT +KK+AA++MGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSE GKTAK FMDQGKFVPD+IIFEVL+AAVERAKG+GKHILLDGFPRSTAQA ALK+HLPVDMVMNLDVPRQII+DRLTDRWIHPGSGRVYAYAYRPPKEHG DDVTGE LVRRDDDQPEVVE+RLAKYE+TTRPLLDLY EE LLHSFSGE+SD+IY +VRKFL++ LPKGKP AG
Sbjct: 5 VPRGAFRL-VGIRGSPFRQRHQHQHPQTRG------IKKMAAVIMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSETGKTAKEFMDQGKFVPDEIIFEVLMAAVERAKGRGKHILLDGFPRSTAQAKALKDHLPVDMVMNLDVPRQIIIDRLTDRWIHPGSGRVYAYAYRPPKEHGVDDVTGEKLVRRDDDQPEVVEERLAKYERTTRPLLDLYGEEGLLHSFSGEQSDVIYAEVRKFLAEVLPKGKPAAG 255
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: A0A835YWM7_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM7_9STRA) HSP 1 Score: 266 bits (679), Expect = 1.490e-83 Identity = 130/224 (58.04%), Postives = 172/224 (76.79%), Query Frame = 3
Query: 189 STPT--AVKKIAAIVMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGK--HILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTLP 848
S PT A + I A++MGAPGSGKGTIS KIL+DF F H+STGDLLR+E +AG+++G AK++M++G VPD ++ +++ + R + K ++LLDGFPR+ AQA+ L E + VDMV++LDVPR I++RLTDRW+HPGSGRVYAY+YRPP++HG DD TGE LVRR+DD PEVVE RLAKYE T PLL Y++ ++H+FSG SD IY DV K+L+ LP
Sbjct: 24 SLPTMPAARSITALIMGAPGSGKGTISSKILKDFPFTHVSTGDLLREETRAGTKLGLQAKSYMERGTLVPDTLMVDLVSEVLARLRTSAKAPNLLLDGFPRTLAQALVLDEKIAVDMVLSLDVPRATIVERLTDRWVHPGSGRVYAYSYRPPQKHGVDDATGEELVRREDDSPEVVEARLAKYEATAAPLLAHYAQHGIVHTFSGTRSDEIYVDVHKYLAGALP 247
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: B7G252_PHATC (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G252_PHATC) HSP 1 Score: 234 bits (596), Expect = 1.200e-71 Identity = 110/207 (53.14%), Postives = 152/207 (73.43%), Query Frame = 3
Query: 222 IVMGAPGSGKGTISGKILRDF-HFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSK 839
+++G PG GKGTISGKIL+DF F H+STGDLLR + G+++GK AK+FM+ GK VPD ++ +L+ + +G+ +LLDGFPR+ QA AL+E +D V+NLD+P I++R+ DRWIHP SGR+Y+Y+Y+PPK GKDDVTGE LV+RDDD+PE V RLA Y+K T PL+D Y + L+ +F G ESD+IY V+ +L +
Sbjct: 2 LILGKPGGGKGTISGKILKDFPRFHHVSTGDLLRQHVNEGTQLGKEAKSFMESGKLVPDSLMINLLMDDAKPYIEEGRSLLLDGFPRTLQQAQALEEVAHIDTVVNLDIPTNTIVERIADRWIHPASGRIYSYSYKPPKAVGKDDVTGEPLVQRDDDKPESVRTRLAAYDKVTAPLVDWYRRKGLVQTFRGTESDVIYPQVKAYLEE 208
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: A0A7S2RAU8_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAU8_9STRA) HSP 1 Score: 230 bits (586), Expect = 1.520e-69 Identity = 114/218 (52.29%), Postives = 155/218 (71.10%), Query Frame = 3
Query: 189 STPTAVKKIA---AIVMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFL 833
+T A+ K+A A++MG PG GKGTIS KIL+DF F H+STGD+LR ++ + IG+ AK FMD G VPD ++ ++++ +E+ +LLDGFPR+ QA AL +HL VDM +NL+VP + I+ R+++RWIHPGSGR+YAY Y PPK HG DD TGE LV+RDDD PE V +RL Y+ T PLLD Y + +L +FSG ESD+IY V+++L
Sbjct: 34 NTVRAMSKLARFTALIMGPPGGGKGTISKKILKDFSFTHLSTGDVLRANVREATAIGQEAKGFMDSGNLVPDDLMVRLVLSELEKTPVD--RLLLDGFPRTRPQAEALGKHLHVDMALNLNVPTETIVARISNRWIHPGSGRIYAYDYNPPKVHGVDDETGEPLVQRDDDTPEAVRKRLTTYDTLTAPLLDFYGDHGVLQNFSGTESDVIYPMVKEYL 249
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: A0A7S1VV41_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV41_9STRA) HSP 1 Score: 227 bits (578), Expect = 2.540e-68 Identity = 118/256 (46.09%), Postives = 165/256 (64.45%), Query Frame = 3
Query: 93 MIQRGAFRIGVRVRGNSAIAPPRHRQQ----QTMAFSTPTAVKKIAAIVMGAPGSGKGTISGKILRDF-HFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTL 845
M++ A + RV + RH +Q T+ P+ + +++G PG GKGT+SGKIL DF HISTGDLLR + + +G AK+FMD GK VPD ++ ++++ +G+ +LLDGFPR+ QA AL + VD+V+NL++P I++R+ DRWIHPGSGRVY Y+Y+PPKEHGKDDVTGE LV+RDDDQP V RL YE T PL+ Y+++ +L +FSG ESD+IY V+ +L +
Sbjct: 1 MLRVVASSVSCRVAPTTRATAFRHIRQCGFMSTLPVQEPSEDSRFV-LILGKPGGGKGTVSGKILEDFPKLHHISTGDLLRQHVLDETSLGMEAKSFMDDGKLVPDALMIDLVMTEATPTVEEGRSLLLDGFPRTIDQAKALDRVVNVDLVINLNIPTDTIVERIADRWIHPGSGRVYNYSYKPPKEHGKDDVTGEALVQRDDDQPHKVRTRLQAYETVTAPLVGYYADKGVLETFSGTESDVIYPMVKVWLQDKI 255
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: K0T839_THAOC (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T839_THAOC) HSP 1 Score: 224 bits (570), Expect = 5.450e-67 Identity = 112/228 (49.12%), Postives = 161/228 (70.61%), Query Frame = 3
Query: 165 RQQQTMAFSTPTAVKKIAAIVMGAPGSGKGTISGKILRDF-HFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTL 845
R M + A + +++G PG GKGTIS KIL DF F H+STGD LR ++ +EIG+ AKT+MD G VPD+++ ++++ A +G+++LLDGFPR+ AQA AL + L VD+ +NL VP + I++R++DRWIHP SGRVY+Y+Y+PPK G DD TG+ LV+RDDD+PE V +RL KYE+ T PL+D YS++ +L +F G SD+IY +V+K+L + L
Sbjct: 33 RMFAAMPLAGEEATNTYSLLILGKPGGGKGTISEKILSDFPQFRHVSTGDELRQHVRNQTEIGREAKTYMDVGGLVPDKLMVKLVMNDAVDAIKRGQNLLLDGFPRTAAQARALDDKLGVDLCINLCVPDETIVERISDRWIHPASGRVYSYSYKPPKVEGLDDETGDPLVQRDDDKPESVLKRLKKYEEATMPLVDYYSKKGVLQTFQGTMSDVIYPEVKKWLDEKL 260
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: A0A7S2URG3_9STRA (GTP:AMP phosphotransferase, mitochondrial n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URG3_9STRA) HSP 1 Score: 223 bits (567), Expect = 8.960e-67 Identity = 106/209 (50.72%), Postives = 149/209 (71.29%), Query Frame = 3
Query: 222 IVMGAPGSGKGTISGKILRDFH-FAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTL 845
+++G PG GKGTISGKIL+DF F H+STGD+LR + G++IG AK +MD G+ VPD ++ +++ A G +LLDGFPR+ QA+AL + L VD+V+NL VP + I++R++DRWIH SGRVY+Y+Y+PPK GKDD+TGE LV+RDDD+PE V RL +Y++ T PL+D Y + +L +F G SD IY +V +L + L
Sbjct: 40 LILGKPGGGKGTISGKILKDFPMFRHLSTGDVLRQHVMNGTDIGLQAKEYMDSGELVPDSLMIRIVMEDTNAAMKSGDSLLLDGFPRTKEQAVALDKELDVDLVINLCVPTETIVERISDRWIHSPSGRVYSYSYKPPKVKGKDDITGEDLVQRDDDRPECVRNRLMRYDEVTSPLVDYYDAKGVLKTFHGTMSDKIYPEVNTWLDEKL 248
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: A0A7S4HR90_9STRA (GTP:AMP phosphotransferase, mitochondrial n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR90_9STRA) HSP 1 Score: 226 bits (576), Expect = 1.230e-66 Identity = 107/209 (51.20%), Postives = 152/209 (72.73%), Query Frame = 3
Query: 222 IVMGAPGSGKGTISGKILRDFH-FAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTL 845
+++G PG GKGTIS K+L+DF F+H+STGD+LR ++ G++IG AK FMD+G VPD+++ +++ E GK +LLDGFPR+ QA AL E L VD+V+NLD+P I+ R+++RWIHP SGRVY Y Y+PP+E G DD TGE LV+RDDD+PE V +RLAKY++ T PL+D Y + +L +F G SD+IY +V+ +L+ +
Sbjct: 133 LMLGKPGGGKGTISNKVLKDFPMFSHLSTGDVLRQHVREGTDIGVEAKRFMDEGGLVPDELMIRLVMEDAESVVEDGKSLLLDGFPRTIDQAKALDESLNVDLVVNLDIPTDTIVQRISERWIHPASGRVYNYTYKPPREEGIDDKTGEPLVQRDDDKPESVRRRLAKYDEATAPLVDYYQSKGVLATFQGTMSDVIYPEVKVWLNDQI 341
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: W7U7D5_9STRA (GTP:AMP phosphotransferase, mitochondrial n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U7D5_9STRA) HSP 1 Score: 221 bits (562), Expect = 2.110e-66 Identity = 105/214 (49.07%), Postives = 157/214 (73.36%), Query Frame = 3
Query: 204 VKKIAAIVMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTL 845
V+++ A+++G PG GKGTIS K+L+DF+F H+STGD+LR ++ + +GK A+T+M +G VPD +I +++VA + +KG +LLDGFPR+ QA+AL+ H+ +D+V++LD+P Q I++R+++RWIH SGR YAY Y PPK+ G DDVTGE LV+R+DD+ E V+ RL +Y++ T PL+D Y + L +FSG ESD+IY V+ L L
Sbjct: 4 VQRLTALILGPPGGGKGTISKKLLKDFNFLHLSTGDVLRRHVRDQTAVGKAAQTYMIRGALVPDNVIVDLVVAELA-SKGHVPRLLLDGFPRTIPQALALEPHVSIDVVIDLDIPDQTIIERISNRWIHAASGRTYAYDYNPPKQKGVDDVTGEPLVQREDDKEETVKARLEQYKQITTPLVDHYRYQGTLATFSGTESDVIYPYVKAHLDAFL 216
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Match: UPI00074FD411 (GTP:AMP phosphotransferase AK3, mitochondrial n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FD411) HSP 1 Score: 220 bits (561), Expect = 3.610e-66 Identity = 106/212 (50.00%), Postives = 150/212 (70.75%), Query Frame = 3
Query: 213 IAAIVMGAPGSGKGTISGKILRDFHFAHISTGDLLRDEIQAGSEIGKTAKTFMDQGKFVPDQIIFEVLVAAVERAKGQGKHILLDGFPRSTAQAIALKEHLPVDMVMNLDVPRQIIMDRLTDRWIHPGSGRVYAYAYRPPKEHGKDDVTGETLVRRDDDQPEVVEQRLAKYEKTTRPLLDLYSEENLLHSFSGEESDIIYGDVRKFLSKTLP 848
+ A++MG PGSGKGTIS +I++ F H+S+GDLLR+ + G+EIG AKT++DQG+ +PD I+ ++++ ++ + H+LLDGFPR+ QA AL++ P+D V++LDVP + I RLT RWIHP SGRVY + PPK G DD+TGE LV+RDDD+PE + +RL YE TRP+L+ Y + +L SFSG E+D I+ V +FL LP
Sbjct: 8 LRALIMGPPGSGKGTISSRIVKHFALKHLSSGDLLRENMNKGTEIGIIAKTYIDQGRLIPDDIMTQLMLNELQTLEQH--HLLLDGFPRTVPQAEALEKRCPIDTVIDLDVPFETIQQRLTARWIHPASGRVYNLEFNPPKVPGTDDITGEPLVQRDDDKPETIMKRLKSYEAETRPVLEYYRRKRVLESFSGTETDKIWPHVHRFLQTKLP 217 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.623.1 >prot_C-linearis_contig10.623.1 ID=prot_C-linearis_contig10.623.1|Name=mRNA_C-linearis_contig10.623.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp MLRPPHTRHSLRVWYVLTRRADGQTANHKMIQRGAFRIGVRVRGNSAIAPback to top mRNA from alignment at C-linearis_contig10:2954473..2958034- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.623.1 ID=mRNA_C-linearis_contig10.623.1|Name=mRNA_C-linearis_contig10.623.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3562bp|location=Sequence derived from alignment at C-linearis_contig10:2954473..2958034- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2954473..2958034- >mRNA_C-linearis_contig10.623.1 ID=mRNA_C-linearis_contig10.623.1|Name=mRNA_C-linearis_contig10.623.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig10:2954473..2958034- (Chordaria linearis ClinC8C monoicous)back to top |