mRNA_C-linearis_contig10.545.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 458 bits (1179), Expect = 7.430e-156 Identity = 239/306 (78.10%), Postives = 262/306 (85.62%), Query Frame = 1
Query: 4 GPGTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915
GPGTSAS STGGRRKGQL Q+ +CHG CR K TGNVRHACQGG DEGGE + C+YW+CQ+C+GRW + S Q GFWCCLH GREWCPC +RVS K SK SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSNSQNRVAVIKAGDRF+CSR +CRR+E L SAATGDTASALPS CAHAEVV EA+RTS MPKADAL S G SAL KVPAGTFNP T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK +
Sbjct: 234 GPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQGG--DEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 535
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 6.550e-149 Identity = 233/306 (76.14%), Postives = 258/306 (84.31%), Query Frame = 1
Query: 4 GPGTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915
GPGTSAS STGGRRKGQL Q+ +CHG CR K TGNVRHACQGG DEGGE + C+YW+ Q+C+GRW + S Q GFWCCLH GREWCPC +R+S K SK SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSN QNRVAVIKAG RF+CSR +CRR+E L SAATGDTASALPS CAHAEVV EA++TS MPKADAL S G SAL KVPAGTFN T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK +
Sbjct: 150 GPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQGG--DEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 451
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 272 bits (695), Expect = 6.620e-84 Identity = 159/307 (51.79%), Postives = 200/307 (65.15%), Query Frame = 1
Query: 10 GTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAK-VPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKLA 915
G S+SVSTGGRRKGQLR++ KSCHG CRT K +++AC VD G +YWLC+ C W E S G F CCLH G++WCPC R P + RS LA++R ST ++EFP T +LT A T S TP G T+SVCTS RVAVIK GD F+CSR +CRRV++ ++ AATG T SALP+ C HAEVV +A+R+S MP AD LFS AL VPAG F+ T AM ARADQAA++GVP+LV G+TKYF + DG + NR V+G W H+KY+ + G+K+FQCK+
Sbjct: 210 GMSSSVSTGGRRKGQLREQAKSCHG-CRTNKPGQGIKYAC----VD--GRNPRWNYWLCKSCFKEWTEASGVDG-FLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVG 508
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 254 bits (649), Expect = 3.650e-76 Identity = 147/281 (52.31%), Postives = 184/281 (65.48%), Query Frame = 1
Query: 16 SASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIG 855
S+SVSTGGRRKGQL +E ++CH CRT +++AC C YWLCQ+CL RW E+S + G F CCLH G WCPCK+R + P +V++RS A+ R T V+EFP P+ +TAATT S TP S GTT+SVCTS S NRVAVIKAG+++MCSRN+C +ATG T LP+ C HAEVV EA+ +S MPKAD +FS AL VP GTFN T AM RADQAA+EGVP+LV G+T+YF ++DG + +RTVIG
Sbjct: 2 SSSVSTGGRRKGQLTEEARTCHE-CRTKDPRQGIKNACGDSA---------CCYWLCQKCLERWTEQSGRDG-FQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIG 263
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.530e-55 Identity = 118/207 (57.00%), Postives = 146/207 (70.53%), Query Frame = 1
Query: 304 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKL 912
P V++RS A+ R V+EFP + +TAATT S TP S G T SVCTS S NRVAVIKAG+++MCSR+ECRRV ++++ AA G T S LP+ C HAEVV EA+R+S MPKAD LFS G AL VP GTFN T AM RADQAA+ GVP+LV G+T+ F ++DG + NRTVIGEW H+KY+ KGG+KMFQCK+
Sbjct: 576 PVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.730e-53 Identity = 112/247 (45.34%), Postives = 152/247 (61.54%), Query Frame = 1
Query: 202 RWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSK-PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTP--GTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESL--RSAATGDTASALPSHCAHAEVVTEADRTSQMPKADA---LFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKM-FQCKLA 915
+W S Q F CC+H +E CPC R K P S+++RS A+ R T V+E P+ T+ TA +T PTP TP GTT+S CTS QNRV+V+++ R+MCSR EC+ +E+L ++AA GDT L HCAHA+VV +A + S +P A A L S AL VP GTFN T A+RAR +A + G+P+LV+ G+TK+FAVRDG FNR ++G W H+K E+ G K +CK+
Sbjct: 3 KWLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADST---PTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQA-KASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVG 245
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.440e-38 Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1
Query: 643 MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915
MPKADAL S G SAL KVPAGTFNP T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK +
Sbjct: 3 MPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 93
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.010e-34 Identity = 73/120 (60.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 559 AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKL 912
AATG T S LP+ C EVV E +R+S MPKAD LFS G AL VP GTFN T AM RADQAAKEGVP+LV G+T+ F ++DG + NRTVIGEW H+KY+ KGG+KMFQCK+
Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.545.1 >prot_C-linearis_contig10.545.1 ID=prot_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp MCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQMPKADALback to top mRNA from alignment at C-linearis_contig10:2157597..2159771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.545.1 ID=mRNA_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2175bp|location=Sequence derived from alignment at C-linearis_contig10:2157597..2159771+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2157597..2159771+ >mRNA_C-linearis_contig10.545.1 ID=mRNA_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig10:2157597..2159771+ (Chordaria linearis ClinC8C monoicous)back to top |