mRNA_C-linearis_contig10.509.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.509.1
Unique NamemRNA_C-linearis_contig10.509.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Match: D7FZX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZX5_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 3.500e-141
Identity = 215/301 (71.43%), Postives = 247/301 (82.06%), Query Frame = 3 
Query:  129 MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPVEAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLLLATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDWAGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYEDEFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLWIGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAP-FG 1028
            M+ P TPTR  G    +SK   PRTPS NRLAVAERGVGARVERGE APV+  F QSARAWRSGGDRKIMFDNRGG ALTPEA RP ALVAI+HVC+WLL+A GMFQIV+SK  DFR+PLHWVGVL++LLGLVT LVRVYTNRCGT P W+  IAV T AAC++SWLLADGPLY+ VK AE CTDENV ELCG ++V E+    E++ D N CVC+VASGAWDLCVDFTS+CENI  +RR+LLMSL++LW+GLGL+F+VAVVSMRVVA+TYDA AIA+A EK+ +K K A  SA  AP FG
Sbjct:    1 MEAPSTPTRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPPALVAIMHVCAWLLIAAGMFQIVMSKCADFRYPLHWVGVLMVLLGLVTALVRVYTNRCGTNPKWSAGIAVATVAACLSSWLLADGPLYKEVKTAEVCTDENVRELCGYEDVDEN-LLPEDIPDLNVCVCRVASGAWDLCVDFTSNCENITSDRRFLLMSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFAKDSATAAPPFG 300
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZX5_ECTSI3.500e-14171.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1588187..1592599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003720.1
Exons5
Model size1199
Cds size906
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927336.0322983-UTR-C-linearis_contig10:1588186..15883511622927336.0322983-UTR-C-linearis_contig10:1588186..1588351Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1588187..1588351 -
1690879633.925247-UTR-C-linearis_contig10:1588186..15883511690879633.925247-UTR-C-linearis_contig10:1588186..1588351Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1588187..1588351 -
1622927336.0943854-UTR-C-linearis_contig10:1592471..15925991622927336.0943854-UTR-C-linearis_contig10:1592471..1592599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1592472..1592599 -
1690879633.980893-UTR-C-linearis_contig10:1592471..15925991690879633.980893-UTR-C-linearis_contig10:1592471..1592599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1592472..1592599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927336.0431497-CDS-C-linearis_contig10:1588351..15885921622927336.0431497-CDS-C-linearis_contig10:1588351..1588592Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1588352..1588592 -
1690879633.9345648-CDS-C-linearis_contig10:1588351..15885921690879633.9345648-CDS-C-linearis_contig10:1588351..1588592Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1588352..1588592 -
1622927336.051951-CDS-C-linearis_contig10:1589114..15892451622927336.051951-CDS-C-linearis_contig10:1589114..1589245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1589115..1589245 -
1690879633.9437106-CDS-C-linearis_contig10:1589114..15892451690879633.9437106-CDS-C-linearis_contig10:1589114..1589245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1589115..1589245 -
1622927336.0671399-CDS-C-linearis_contig10:1590074..15902541622927336.0671399-CDS-C-linearis_contig10:1590074..1590254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1590075..1590254 -
1690879633.9522479-CDS-C-linearis_contig10:1590074..15902541690879633.9522479-CDS-C-linearis_contig10:1590074..1590254Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1590075..1590254 -
1622927336.0772953-CDS-C-linearis_contig10:1590661..15907921622927336.0772953-CDS-C-linearis_contig10:1590661..1590792Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1590662..1590792 -
1690879633.9603-CDS-C-linearis_contig10:1590661..15907921690879633.9603-CDS-C-linearis_contig10:1590661..1590792Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1590662..1590792 -
1622927336.0858297-CDS-C-linearis_contig10:1592248..15924711622927336.0858297-CDS-C-linearis_contig10:1592248..1592471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1592249..1592471 -
1690879633.9706147-CDS-C-linearis_contig10:1592248..15924711690879633.9706147-CDS-C-linearis_contig10:1592248..1592471Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1592249..1592471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.509.1prot_C-linearis_contig10.509.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1588352..1592471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.509.1

>prot_C-linearis_contig10.509.1 ID=prot_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPV
EAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLL
LATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDW
AGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYED
EFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLW
IGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAPFG
V*
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mRNA from alignment at C-linearis_contig10:1588187..1592599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4413bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)
TGCCGCCCGCCGCCCCCTCACCGAGATCCACTCAAAGACAGATTACGCGG
TAGTCGTGCGTTACAACCTCCCTCCCTCCTTCCACGGCGAGGGCCTCGCG
ACTCTTAGAGCTCCTTCTATCGACCAGGATGAAACCACCTCAGACTCCCA
CGCGCGCCGGCGGGCAAGGAGCGGGGCGCTCGAAGGGGCCTGCTCCTAGA
ACGCCGAGCGTCAACCGCCTCGCGGTCGCCGAGAGAGGAGTCGGGGCGAG
GGTGGAGCGCGGCGAGGCGGCGCCCGTCGAGGCGCCGTTCGCGCAGAGCG
CTCGGGCGTGGAGGTCAGGTGGAGACCGGAAGATCATGTTCGACAACCGA
GGTGAATCTGTCTTGATGTGTATGTGATCGAGCTTGGAAAATACCGTAGA
AAATATGAAAATACAGCAAGCGCAGAGAGAGAGAGCAGAGTTAAGAGTTT
TGACATGATAGACTAAGGGTTTTGAGCGAGGTCAAAAAAATCGCCAGCGG
GTTTGTTTGAGCTGGGGGGGATGGTGTTGGTCCCAGAAGGCCGAACGTCT
GGCTTGGTGCACGCCACCTTGTGCCTAGGAGCCGTAGTGCCCCATCGTGT
TAGCTGCTGCTCTGCTCTCTGCTGCCGGAGTATTTATAAGGCCTCATCTT
TTATTATTATCCAAAAGGCGTACAATAGTCTACCGGACGAGGGTGTTGGG
TGGTACGCTCCCAATTAATTCGAGCCTGCTGCATCCCACCGATTTTCCTT
ACGTAGTATCTGGCAAGCCTTTTCTGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTGTGGACATATTGCTGTCATACTTGGTTCGAATCCCGGCGCAA
GCGACTTTTTCTCACACAAAGTGAGTTTTTTCTCTCGCTTTCGTTCCGTG
GAAAGCGCTTATTAGTTTGTGTGTGCACTTGAGGGAGAGACGGCTGAAAC
TCTCTTGCGTTAAAAAAAAACAGGCAAGCACCGCAGAAGGTGGGCGGGGG
CCTCAGGGAGAGGGGCCTTCTGTGTGACCACGGTTCAGATGTTCCGGCAA
GATGCCCCGCGTGGCAGGGCGCCTCTGCGAACTCTGGAAATGAATGTGAA
GACGAAAATAAAGAAAAAAAAGCACAGCAGTGATAGCCGGTCGCCCCCGT
AGTCTAGTTGGTAAACCGCACACCTTTCTAGCGCCCAGGCCACGGGTTCG
AATCCCGGCGTATTCGATGTTTTCTCACAAAAACAAACGTGCAAACGTGA
GTTTTGCTCTCAAGTACGTCCCTGCCTGTGGTTCGGTTGTGGAAAGCGCT
ACGTAGTCGTGTGTACACAGAGGAGAGATTGCCGCGCTCTTCTCGCATTA
AAAATCGAAGGCGAAGCACCGCAGGAGGGGAGGGTGGGGGGCCTCAGGGA
GAGGAACCCTTCTGCGTGACCACGGGCTAGAGCTCCTATCCGGCAAAGTG
AGCTCTGGTTATATGTGAAGATTAAAAAAAAAATGATCGTAAAACGAAGA
GGTCAAGATCAAAGAGTCAAATCAGGTTAAAGCGGAGCCGGTGCTCATCT
GCAAATATATGTGCCCCCCCGGTTGCCTTCAAGAGCTAGAAAACCAGCCG
AGAATTCCTCACACGCAAGTAAAGTAGCTTGATGCACATAGCTTGTCTAT
CTATTAACCTCGGGTGGTACAGCAGTAAACTGCATGCCCGTTTGTTGTGT
GGTGTCCTTTGTTGCTCGTGTTGGCGAAGCAGCGCCAACCCCGCGTACTG
CCTGTACCCGTTAACGTTCGTTACCTTCTCGTGTTTTGGCATCATTATCA
TTCATAGGTGGGGCTGCCCTCACCCCGGAGGCCCTCCGCCCGATGGCGCT
GGTGGCGATCCTTCACGTGTGCTCGTGGCTGTTGCTGGCGACAGGGATGT
TTCAAATCGTCGTGTCCAAGTTGGGCGACTTCAGATTTGTGAGAGATATT
TGCCGCGCAGCAGCATCAATCTACAGTATGTACATACATCGCTCCGACCC
TGCGCTAGAGAGCACTGACAGTACACGCGAACTACGTAGCCTACATCCAA
GATTGGCTGTTCGCGCTCTCTCAAGAGTGTATCAACGATACGTACGCTGG
GTAGACGTATTTGGAGAGTATGCTAGCAGTTTACATAATACAATATCACT
GGCGTGCAGATAATACTATCCCTTCGTGTGAGTCCGCGGACTTTGGATTG
CTTCCTTGCTCGACCGTTATGTAACCCTTTTCTGCTATTGTGCGCTCTGC
GACCGTCAACCGCCATGCCGATGAACCCGGCCTTGGACCACCGCCACCGC
CAATTCCTCCACTGCGGATGTTGATTCTCGTGTACGGTAACGTAGCCCCT
CCACTGGGTGGGCGTCCTGCTTATGCTCCTGGGTCTGGTGACGATTCTGG
TGAGGGTGTACACGAACCGCTGCGGTACCAAGCCGGATTGGGCGGGGTTC
ATTGCCGTGTTCACCGGGGCGGCGTGCATGGCATCGTGGCTGTTGGCAGA
CGGGCCTCTCTACAGGAGAGTCAAGGTGTGAAGATGGTGTTAAGATGCGC
AGAGCCACGCGCGTATATGCGTCTTCGGAGCGTACGAAGTATGGTTTTAC
TCGTGCGTTCTTGTGGGGATTTGTTGTTGCTGGTGTAGGGAGTGTACGTG
TGCATCCTTCAGGTTTAGATGGTCGTTCGATAGAGATTTCCTCGTGCACT
TCTGAACGCACGGTGTTTGCTCGTGGCTGATCACAGATTTTCGCCGCTGT
AGATACCAGGAATGTGCGACGTACATAGCTGGGTATTCACACAAACCCTT
AAGTGTGGGGACTTGCGTTGCACACATGTCTCTCTCTGAGAAGCCCAATA
GTCATGAAAAAAGTTCTCATTTTCTGCCAAAAAGCCTTCCGCAATGGAAC
GACGCCCAGGGGGGGCGTATGCAGCAAACACCACGCTGCTGTTATCCGCC
CGGCCGGCTGAGCTGTAGTTTTCCACCCGTCACCAATCGCAGAGTCTCCT
ATACCCGCAGCCCCGCGGCCTCAGCCGTAAAGCTTTGATGTGTTCGTGGT
TACTTGATGGTTCTAGTGGCCCTGAACGCTTCGTGTTTTATTGCTTGCAG
TGTACTGATGTCCCGACGCAACCGAATCGGTACAGCAGTATCCGCATCTT
CTCGCCGACCGCAACATTCAAGCAACAAACATGTCGGTGATTTTGGTCTT
TCAATACTCATCAGCGGGCGAGAGTCCCAACCTCTCTGTCGTCTTTCTTC
CGATCGCGGCGTTCATTGCCGCGCACCCGCTCTCGTGTCTGCCGTGTTTT
TGCGTGTGATAACAACCCATTATATGACGTGATACTATATGATATGGTGC
ACAGGCGGCGGAGAGGTGCACGGACGAAAACGTATTTGAGCTGTGCGGGA
TCGATGAAGTTTACGAGGACGAGTTCAGCCAGGAGAACCTGGCTGATACC
AACAAATGCGTCTGCCAAGTGGCCTCGGGGGCGTGGTGAGTGGGCCGCTT
AACGGCGATTCTGTGTGCACTTGGGAGCGTGTAGTTTCTTGTGCGGAAAG
ATCGGCCGCCATGAAGCCAGCAGCCGTAGTAGTAGGTCTAGAAACACCGG
CAGCCGTGGTCACAGCATCCACAGCAACAGCGAGTACGAGTACAACAAGC
CACGAAACCGTTTATGTTCGTTGGGATCTTCTCACAAACCTGCCTGTGGA
GCGCCGAATATAATCGATGGGAGCGTTGGCGTTCACGACCGTGCACGATT
TGTTCGTTCCCCCTCTTTGGAAAAGGCACGACCTCGACTTCCACCAACAT
TTCAAAAATCTGCTCTGTATCTGTGGCCAGCCTTTGACCGCCCCCCCTCC
TCCCTTACTCCCGACCCTTTGTCTCCCCCCGCTTCCCGCCGCCGTCCCTT
TTGCGGGACTGTCAACAACACCGCCCTCATCGAACACCAAACGCCACAAT
GACTAAAACAACGACAACGACAACCTCGTCAACAACACGCGGCCGCACTC
ACTCCAGGGACCTGTGCGTCGACTTCACGTCGGACTGCGAGAACATCCCG
GGCAACCGGCGTTACCTGCTCATGTCGCTCGTGACCCTCTGGATCGGCCT
CGGCCTCTCGTTCGTGGTGGCGGTGGTGTCCATGCGGGTGGTGGCCAGCA
CGTACGACGCCGGGGCGATCGCCGAGGCGCGGGAGAAGGAAAGGGTGAAG
GAGAAGGCGGCGTCGGCGTCGGCACCGACGGCACCCTTCGGGGTGTGAAA
AACTTTCGGTGCAAAAGGGGAGTGTCCCATATGACCCTTATTCCGCTAGA
GACAGCCAGGAACGGAGCACTTCTTCTGTGGGGCGGTAGCCGGGAGGGGG
TCGGGGTTTCGCTGGCCAATTCTGAGAAGAGCTGAGGTGCGACAATGATG
GTGCCAGAGGCGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:1588187..1592599-

>mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)
ATGAAACCACCTCAGACTCCCACGCGCGCCGGCGGGCAAGGAGCGGGGCG
CTCGAAGGGGCCTGCTCCTAGAACGCCGAGCGTCAACCGCCTCGCGGTCG
CCGAGAGAGGAGTCGGGGCGAGGGTGGAGCGCGGCGAGGCGGCGCCCGTC
GAGGCGCCGTTCGCGCAGAGCGCTCGGGCGTGGAGGTCAGGTGGAGACCG
GAAGATCATGTTCGACAACCGAGATGAAACCACCTCAGACTCCCACGCGC
GCCGGCGGGCAAGGAGCGGGGCGCTCGAAGGGGCCTGCTCCTAGAACGCC
GAGCGTCAACCGCCTCGCGGTCGCCGAGAGAGGAGTCGGGGCGAGGGTGG
AGCGCGGCGAGGCGGCGCCCGTCGAGGCGCCGTTCGCGCAGAGCGCTCGG
GCGTGGAGGTCAGGTGGAGACCGGAAGATCATGTTCGACAACCGAGGTGG
GGCTGCCCTCACCCCGGAGGCCCTCCGCCCGATGGCGCTGGTGGCGATCC
TTCACGTGTGCTCGTGGCTGTTGCTGGCGACAGGGATGTTTCAAATCGTC
GTGTCCAAGTTGGGCGACTTCAGATTTGTGGGGCTGCCCTCACCCCGGAG
GCCCTCCGCCCGATGGCGCTGGTGGCGATCCTTCACGTGTGCTCGTGGCT
GTTGCTGGCGACAGGGATGTTTCAAATCGTCGTGTCCAAGTTGGGCGACT
TCAGATTTCCCCTCCACTGGGTGGGCGTCCTGCTTATGCTCCTGGGTCTG
GTGACGATTCTGGTGAGGGTGTACACGAACCGCTGCGGTACCAAGCCGGA
TTGGGCGGGGTTCATTGCCGTGTTCACCGGGGCGGCGTGCATGGCATCGT
GGCTGTTGGCAGACGGGCCTCTCTACAGGAGAGTCAAGCCCCTCCACTGG
GTGGGCGTCCTGCTTATGCTCCTGGGTCTGGTGACGATTCTGGTGAGGGT
GTACACGAACCGCTGCGGTACCAAGCCGGATTGGGCGGGGTTCATTGCCG
TGTTCACCGGGGCGGCGTGCATGGCATCGTGGCTGTTGGCAGACGGGCCT
CTCTACAGGAGAGTCAAGGCGGCGGAGAGGTGCACGGACGAAAACGTATT
TGAGCTGTGCGGGATCGATGAAGTTTACGAGGACGAGTTCAGCCAGGAGA
ACCTGGCTGATACCAACAAATGCGTCTGCCAAGTGGCCTCGGGGGCGTGG
CGGCGGAGAGGTGCACGGACGAAAACGTATTTGAGCTGTGCGGGATCGAT
GAAGTTTACGAGGACGAGTTCAGCCAGGAGAACCTGGCTGATACCAACAA
ATGCGTCTGCCAAGTGGCCTCGGGGGCGTGGGACCTGTGCGTCGACTTCA
CGTCGGACTGCGAGAACATCCCGGGCAACCGGCGTTACCTGCTCATGTCG
CTCGTGACCCTCTGGATCGGCCTCGGCCTCTCGTTCGTGGTGGCGGTGGT
GTCCATGCGGGTGGTGGCCAGCACGTACGACGCCGGGGCGATCGCCGAGG
CGCGGGAGAAGGAAAGGGTGAAGGAGAAGGCGGCGTCGGCGTCGGCACCG
ACGGCACCCTTCGGGGTGTGAGGACCTGTGCGTCGACTTCACGTCGGACT
GCGAGAACATCCCGGGCAACCGGCGTTACCTGCTCATGTCGCTCGTGACC
CTCTGGATCGGCCTCGGCCTCTCGTTCGTGGTGGCGGTGGTGTCCATGCG
GGTGGTGGCCAGCACGTACGACGCCGGGGCGATCGCCGAGGCGCGGGAGA
AGGAAAGGGTGAAGGAGAAGGCGGCGTCGGCGTCGGCACCGACGGCACCC
TTCGGGGTGTGA
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